HEADER IMMUNE SYSTEM/VIRAL PROTEIN 16-SEP-19 6UCF TITLE N123-VRC34_PI4 HIV NEUTRALIZING ANTIBODY IN COMPLEX WITH HIV FUSION TITLE 2 PEPTIDE RESIDUE 512-519 COMPND MOL_ID: 1; COMPND 2 MOLECULE: N123-VRC34_PI4 LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: N123-VRC34_PI4 HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: HIV FUSION PEPTIDE; COMPND 11 CHAIN: A; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 18 ORGANISM_COMMON: HIV-1; SOURCE 19 ORGANISM_TAXID: 11676 KEYWDS HIV, NEUTRALIZING, ANTIBODY, FUSION PEPTIDE, IMMUNE SYSTEM-VIRAL KEYWDS 2 PROTEIN COMPLEX, ANTIVIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.XU,P.D.KWONG REVDAT 2 22-APR-20 6UCF 1 JRNL REVDAT 1 18-MAR-20 6UCF 0 JRNL AUTH C.H.SHEN,B.J.DEKOSKY,Y.GUO,K.XU,Y.GU,D.KILAM,S.H.KO,R.KONG, JRNL AUTH 2 K.LIU,M.K.LOUDER,L.OU,B.ZHANG,C.W.CHAO,M.M.CORCORAN,E.FENG, JRNL AUTH 3 J.HUANG,E.NORMANDIN,S.O'DELL,A.RANSIER,R.RAWI,M.SASTRY, JRNL AUTH 4 S.D.SCHMIDT,S.WANG,Y.WANG,G.Y.CHUANG,N.A.DORIA-ROSE,B.LIN, JRNL AUTH 5 T.ZHOU,E.A.BORITZ,M.CONNORS,D.C.DOUEK,G.B.KARLSSON HEDESTAM, JRNL AUTH 6 Z.SHENG,L.SHAPIRO,J.R.MASCOLA,P.D.KWONG JRNL TITL VRC34-ANTIBODY LINEAGE DEVELOPMENT REVEALS HOW A REQUIRED JRNL TITL 2 RARE MUTATION SHAPES THE MATURATION OF A BROAD JRNL TITL 3 HIV-NEUTRALIZING LINEAGE. JRNL REF CELL HOST MICROBE V. 27 531 2020 JRNL REFN ESSN 1934-6069 JRNL PMID 32130953 JRNL DOI 10.1016/J.CHOM.2020.01.027 REMARK 2 REMARK 2 RESOLUTION. 1.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 108214 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 5439 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.1000 - 4.0020 1.00 3722 207 0.1655 0.1644 REMARK 3 2 4.0020 - 3.1772 0.95 3377 191 0.1549 0.1602 REMARK 3 3 3.1772 - 2.7758 1.00 3498 199 0.1720 0.1832 REMARK 3 4 2.7758 - 2.5221 1.00 3503 200 0.1826 0.1817 REMARK 3 5 2.5221 - 2.3413 1.00 3467 208 0.1707 0.2019 REMARK 3 6 2.3413 - 2.2033 1.00 3497 155 0.1628 0.1851 REMARK 3 7 2.2033 - 2.0930 0.99 3448 183 0.1573 0.1861 REMARK 3 8 2.0930 - 2.0019 0.98 3402 162 0.1589 0.1636 REMARK 3 9 2.0019 - 1.9248 1.00 3424 184 0.1547 0.1728 REMARK 3 10 1.9248 - 1.8584 1.00 3472 194 0.1605 0.1771 REMARK 3 11 1.8584 - 1.8003 1.00 3454 177 0.1598 0.2013 REMARK 3 12 1.8003 - 1.7488 1.00 3426 163 0.1633 0.1764 REMARK 3 13 1.7488 - 1.7028 1.00 3448 201 0.1560 0.1987 REMARK 3 14 1.7028 - 1.6613 1.00 3388 203 0.1580 0.2008 REMARK 3 15 1.6613 - 1.6235 1.00 3451 189 0.1556 0.1847 REMARK 3 16 1.6235 - 1.5889 1.00 3417 189 0.1526 0.1770 REMARK 3 17 1.5889 - 1.5572 1.00 3411 192 0.1620 0.1798 REMARK 3 18 1.5572 - 1.5278 0.99 3381 172 0.1621 0.1877 REMARK 3 19 1.5278 - 1.5005 0.99 3412 166 0.1666 0.1777 REMARK 3 20 1.5005 - 1.4751 0.99 3367 159 0.1682 0.1888 REMARK 3 21 1.4751 - 1.4513 1.00 3447 182 0.1718 0.1714 REMARK 3 22 1.4513 - 1.4289 1.00 3361 172 0.1719 0.2053 REMARK 3 23 1.4289 - 1.4079 1.00 3483 179 0.1804 0.2011 REMARK 3 24 1.4079 - 1.3881 1.00 3391 178 0.1772 0.2124 REMARK 3 25 1.3881 - 1.3693 1.00 3348 209 0.1847 0.2018 REMARK 3 26 1.3693 - 1.3515 1.00 3410 182 0.1870 0.2461 REMARK 3 27 1.3515 - 1.3346 1.00 3438 166 0.1992 0.2211 REMARK 3 28 1.3346 - 1.3186 1.00 3429 148 0.2057 0.2258 REMARK 3 29 1.3186 - 1.3032 1.00 3408 190 0.2182 0.2217 REMARK 3 30 1.3032 - 1.2900 0.90 3095 139 0.2341 0.2479 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UCF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1000244364. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 108470 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.289 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.62900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.24 M AMMONIUM ACETATE, 23% PEG3350, REMARK 280 0.1 M TRIS, PH 8.4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.21000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.32850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.21700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.32850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.21000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.21700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS H 218 REMARK 465 THR H 219 REMARK 465 HIS H 220 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH H 531 O HOH H 562 1.84 REMARK 500 O HOH H 398 O HOH H 582 1.85 REMARK 500 O HOH L 335 O HOH L 541 1.85 REMARK 500 O HOH H 404 O HOH H 411 1.85 REMARK 500 O HOH H 468 O HOH H 594 1.92 REMARK 500 O HOH H 405 O HOH H 569 1.93 REMARK 500 O HOH H 642 O HOH H 657 1.94 REMARK 500 O HOH A 606 O HOH A 608 1.96 REMARK 500 O HOH H 462 O HOH H 555 1.97 REMARK 500 O HOH H 304 O HOH H 563 1.97 REMARK 500 O HOH L 516 O HOH L 536 1.98 REMARK 500 O HOH H 540 O HOH H 574 1.99 REMARK 500 O HOH H 373 O HOH H 594 1.99 REMARK 500 OE1 GLU H 2 O HOH H 301 2.00 REMARK 500 OD1 ASP L 185 O HOH L 301 2.04 REMARK 500 O HOH L 464 O HOH L 541 2.04 REMARK 500 O HOH L 337 O HOH L 443 2.06 REMARK 500 O HOH H 526 O HOH H 558 2.07 REMARK 500 OG SER H 130 O HOH H 302 2.07 REMARK 500 O HOH L 360 O HOH L 526 2.07 REMARK 500 O HOH L 307 O HOH L 391 2.08 REMARK 500 O HOH H 374 O HOH H 413 2.08 REMARK 500 O HOH L 422 O HOH L 571 2.09 REMARK 500 O HOH H 401 O HOH H 543 2.10 REMARK 500 O HOH L 353 O HOH L 378 2.13 REMARK 500 OD1 ASN H 204 O HOH H 303 2.14 REMARK 500 O HOH H 405 O HOH H 520 2.15 REMARK 500 O HOH L 488 O HOH H 573 2.16 REMARK 500 O HOH H 531 O HOH H 632 2.17 REMARK 500 O HOH H 630 O HOH H 663 2.17 REMARK 500 O HOH L 420 O HOH L 482 2.18 REMARK 500 O HOH L 428 O HOH L 497 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH L 533 O HOH H 424 3655 1.97 REMARK 500 O HOH L 544 O HOH H 608 4555 2.02 REMARK 500 O HOH L 583 O HOH H 672 3555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL H 3 CB VAL H 3 CG2 -0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG L 108 NE - CZ - NH1 ANGL. DEV. = -4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG L 30 -127.74 54.08 REMARK 500 ALA L 51 -28.86 66.34 REMARK 500 MET L 91 36.98 -145.22 REMARK 500 ARG H 66 -33.14 -134.59 REMARK 500 THR H 160 -32.86 -130.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H 672 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH H 673 DISTANCE = 6.83 ANGSTROMS DBREF 6UCF L 1 103 PDB 6UCF 6UCF 1 103 DBREF 6UCF L 104 213 UNP Q6GMX0 Q6GMX0_HUMAN 126 235 DBREF 6UCF H 1 220 PDB 6UCF 6UCF 1 220 DBREF 6UCF A 512 519 PDB 6UCF 6UCF 512 519 SEQRES 1 L 213 ASP ILE GLN LEU THR GLN SER PRO SER PHE LEU SER ALA SEQRES 2 L 213 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 213 GLN GLY VAL ARG ASN GLU LEU ALA TRP TYR GLN GLN LYS SEQRES 4 L 213 PRO GLY LYS ALA PRO ASN LEU LEU ILE TYR TYR ALA SER SEQRES 5 L 213 THR LEU GLN SER GLY VAL PRO SER ARG PHE SER ALA SER SEQRES 6 L 213 GLY SER GLY THR HIS PHE THR LEU THR VAL SER SER LEU SEQRES 7 L 213 GLN PRO GLU ASP PHE ALA THR TYR PHE CYS GLN HIS MET SEQRES 8 L 213 SER SER TYR PRO LEU THR PHE GLY GLY GLY THR LYS VAL SEQRES 9 L 213 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 213 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 213 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 213 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 213 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 213 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 213 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 213 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 213 PHE ASN ARG GLY GLU SEQRES 1 H 229 GLN GLU VAL LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 229 PRO GLY ALA SER VAL LYS VAL SER CYS ARG ALA PHE GLY SEQRES 3 H 229 TYR THR PHE THR GLY ASN ALA LEU HIS TRP VAL ARG GLN SEQRES 4 H 229 ALA PRO GLY GLN GLY LEU GLU TRP LEU GLY TRP ILE ASN SEQRES 5 H 229 PRO HIS SER GLY ASP THR THR THR SER GLN LYS PHE GLN SEQRES 6 H 229 GLY ARG VAL TYR MET THR ARG ASP LYS SER ILE ASN THR SEQRES 7 H 229 ALA TYR LEU ASP VAL THR ARG LEU THR SER ASP ASP THR SEQRES 8 H 229 ALA ILE TYR TYR CYS ALA ARG ASP LYS TYR TYR GLY ASN SEQRES 9 H 229 GLU ALA VAL GLY MET ASP VAL TRP GLY GLN GLY THR THR SEQRES 10 H 229 VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL SEQRES 11 H 229 PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY SEQRES 12 H 229 THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO SEQRES 13 H 229 GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SEQRES 14 H 229 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER SEQRES 15 H 229 GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SER SEQRES 16 H 229 SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN SEQRES 17 H 229 HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU SEQRES 18 H 229 PRO LYS SER CYS ASP LYS THR HIS SEQRES 1 A 8 ALA VAL GLY ILE GLY ALA VAL PHE FORMUL 4 HOH *679(H2 O) HELIX 1 AA1 GLN L 79 PHE L 83 5 5 HELIX 2 AA2 SER L 121 LYS L 126 1 6 HELIX 3 AA3 LYS L 183 HIS L 189 1 7 HELIX 4 AA4 THR H 28 ASN H 32 5 5 HELIX 5 AA5 GLN H 61 GLN H 64 5 4 HELIX 6 AA6 LYS H 73 ILE H 75 5 3 HELIX 7 AA7 THR H 83 THR H 87 5 5 HELIX 8 AA8 TYR H 97 GLU H 100A 5 5 HELIX 9 AA9 SER H 127 THR H 131 5 5 HELIX 10 AB1 SER H 156 ALA H 158 5 3 HELIX 11 AB2 SER H 187 LEU H 189 5 3 HELIX 12 AB3 LYS H 201 ASN H 204 5 4 SHEET 1 AA1 4 LEU L 4 SER L 7 0 SHEET 2 AA1 4 VAL L 19 ALA L 25 -1 O THR L 22 N SER L 7 SHEET 3 AA1 4 HIS L 70 VAL L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 AA1 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA2 6 PHE L 10 ALA L 13 0 SHEET 2 AA2 6 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AA2 6 ALA L 84 HIS L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 AA2 6 LEU L 33 GLN L 38 -1 N GLN L 38 O THR L 85 SHEET 5 AA2 6 ASN L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA2 6 THR L 53 LEU L 54 -1 O THR L 53 N TYR L 49 SHEET 1 AA3 4 PHE L 10 ALA L 13 0 SHEET 2 AA3 4 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AA3 4 ALA L 84 HIS L 90 -1 N ALA L 84 O VAL L 104 SHEET 4 AA3 4 THR L 97 PHE L 98 -1 O THR L 97 N HIS L 90 SHEET 1 AA4 4 SER L 114 PHE L 118 0 SHEET 2 AA4 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 AA4 4 TYR L 173 SER L 182 -1 O LEU L 175 N LEU L 136 SHEET 4 AA4 4 SER L 159 VAL L 163 -1 N SER L 162 O SER L 176 SHEET 1 AA5 4 ALA L 153 LEU L 154 0 SHEET 2 AA5 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AA5 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 AA5 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SHEET 1 AA6 4 VAL H 3 GLN H 6 0 SHEET 2 AA6 4 VAL H 18 PHE H 25 -1 O PHE H 25 N VAL H 3 SHEET 3 AA6 4 THR H 77 VAL H 82 -1 O ALA H 78 N CYS H 22 SHEET 4 AA6 4 VAL H 67 ASP H 72 -1 N ASP H 72 O THR H 77 SHEET 1 AA7 6 GLU H 10 LYS H 12 0 SHEET 2 AA7 6 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA7 6 ALA H 88 ASP H 95 -1 N TYR H 90 O THR H 107 SHEET 4 AA7 6 LEU H 34 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AA7 6 GLU H 46 ILE H 51 -1 O LEU H 48 N TRP H 36 SHEET 6 AA7 6 THR H 57 THR H 59 -1 O THR H 58 N TRP H 50 SHEET 1 AA8 4 GLU H 10 LYS H 12 0 SHEET 2 AA8 4 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA8 4 ALA H 88 ASP H 95 -1 N TYR H 90 O THR H 107 SHEET 4 AA8 4 MET H 100E TRP H 103 -1 O VAL H 102 N ARG H 94 SHEET 1 AA9 4 SER H 120 LEU H 124 0 SHEET 2 AA9 4 THR H 135 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 AA9 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA9 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AB1 4 SER H 120 LEU H 124 0 SHEET 2 AB1 4 THR H 135 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 AB1 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AB1 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AB2 3 THR H 151 TRP H 154 0 SHEET 2 AB2 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AB2 3 THR H 205 LYS H 210 -1 O VAL H 207 N VAL H 198 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.24 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.02 SSBOND 3 CYS H 22 CYS H 92 1555 1555 2.06 SSBOND 4 CYS H 140 CYS H 196 1555 1555 2.06 CISPEP 1 SER L 7 PRO L 8 0 -8.87 CISPEP 2 TYR L 94 PRO L 95 0 -8.60 CISPEP 3 TYR L 140 PRO L 141 0 5.52 CISPEP 4 PHE H 146 PRO H 147 0 -11.17 CISPEP 5 GLU H 148 PRO H 149 0 -5.39 CRYST1 38.420 86.434 128.657 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026028 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011570 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007773 0.00000