HEADER RNA 24-SEP-19 6UFG TITLE CO-CRYSTAL STRUCTURE OF M. TUBERCULOSIS ILES T-BOX IN COMPLEX WITH TITLE 2 TRNA-3'-OH COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (77-MER); COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RNA (166-MER); COMPND 7 CHAIN: A; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 4 ORGANISM_TAXID: 1773; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 8 ORGANISM_TAXID: 1773 KEYWDS COMPLEX, RIBOREGULATOR, RIBOSWITCH, RNA EXPDTA X-RAY DIFFRACTION AUTHOR R.A.BATTAGLIA,J.C.GRIGG,A.KE REVDAT 5 13-MAR-24 6UFG 1 LINK REVDAT 4 01-JAN-20 6UFG 1 REMARK REVDAT 3 18-DEC-19 6UFG 1 JRNL REVDAT 2 04-DEC-19 6UFG 1 JRNL REVDAT 1 20-NOV-19 6UFG 0 JRNL AUTH R.A.BATTAGLIA,J.C.GRIGG,A.KE JRNL TITL STRUCTURAL BASIS FOR TRNA DECODING AND AMINOACYLATION JRNL TITL 2 SENSING BY T-BOX RIBOREGULATORS. JRNL REF NAT.STRUCT.MOL.BIOL. V. 26 1106 2019 JRNL REFN ESSN 1545-9985 JRNL PMID 31740853 JRNL DOI 10.1038/S41594-019-0327-6 REMARK 2 REMARK 2 RESOLUTION. 2.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 77.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 21612 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.210 REMARK 3 FREE R VALUE TEST SET COUNT : 1991 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 0.0000 - 7.0572 0.99 1417 150 0.1911 0.2013 REMARK 3 2 7.0572 - 5.6020 1.00 1424 147 0.1920 0.2341 REMARK 3 3 5.6020 - 4.8940 1.00 1390 138 0.1594 0.2100 REMARK 3 4 4.8940 - 4.4466 1.00 1428 145 0.1785 0.2099 REMARK 3 5 4.4466 - 4.1279 1.00 1431 141 0.1871 0.2606 REMARK 3 6 4.1279 - 3.8846 1.00 1388 138 0.1726 0.2092 REMARK 3 7 3.8846 - 3.6900 1.00 1415 143 0.1921 0.2541 REMARK 3 8 3.6900 - 3.5294 1.00 1393 137 0.1982 0.2328 REMARK 3 9 3.5294 - 3.3935 1.00 1414 143 0.2295 0.2852 REMARK 3 10 3.3935 - 3.2764 0.99 1392 142 0.2185 0.2684 REMARK 3 11 3.2764 - 3.1740 0.99 1378 144 0.2161 0.2507 REMARK 3 12 3.1740 - 3.0832 1.00 1398 142 0.2512 0.2927 REMARK 3 13 3.0832 - 3.0021 0.99 1411 145 0.3373 0.3745 REMARK 3 14 3.0021 - 2.9290 0.95 1342 136 0.5015 0.6178 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.480 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 116.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.1633 -10.4195 -3.8915 REMARK 3 T TENSOR REMARK 3 T11: 1.1910 T22: 0.6502 REMARK 3 T33: 1.2873 T12: -0.0742 REMARK 3 T13: 0.1830 T23: 0.0496 REMARK 3 L TENSOR REMARK 3 L11: 0.8751 L22: 0.1594 REMARK 3 L33: 0.8172 L12: -0.2738 REMARK 3 L13: 0.5334 L23: -0.0632 REMARK 3 S TENSOR REMARK 3 S11: 0.8608 S12: 0.0123 S13: -0.2067 REMARK 3 S21: 0.2226 S22: -0.3235 S23: -0.1618 REMARK 3 S31: 0.4333 S32: 0.4097 S33: 0.0851 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 11 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.2521 3.8615 -5.9484 REMARK 3 T TENSOR REMARK 3 T11: 1.1547 T22: 0.7126 REMARK 3 T33: 1.2548 T12: -0.0082 REMARK 3 T13: 0.2359 T23: -0.1157 REMARK 3 L TENSOR REMARK 3 L11: 0.0521 L22: 0.0036 REMARK 3 L33: 0.0032 L12: 0.0315 REMARK 3 L13: -0.0542 L23: -0.0096 REMARK 3 S TENSOR REMARK 3 S11: 0.0283 S12: 0.0608 S13: 0.0194 REMARK 3 S21: 0.2238 S22: 0.3495 S23: 0.3023 REMARK 3 S31: -0.0839 S32: -0.1018 S33: 0.0002 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 21 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4131 2.7116 4.1794 REMARK 3 T TENSOR REMARK 3 T11: 1.4604 T22: 1.3058 REMARK 3 T33: 2.8293 T12: 0.0771 REMARK 3 T13: 0.5149 T23: 0.2710 REMARK 3 L TENSOR REMARK 3 L11: 0.0397 L22: 0.0246 REMARK 3 L33: 0.0239 L12: -0.0406 REMARK 3 L13: 0.0374 L23: -0.0388 REMARK 3 S TENSOR REMARK 3 S11: -0.3784 S12: 0.1120 S13: 0.4879 REMARK 3 S21: 0.1657 S22: -0.2256 S23: -0.1007 REMARK 3 S31: 0.0598 S32: -0.0428 S33: -0.0004 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 31 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4337 4.0467 8.5724 REMARK 3 T TENSOR REMARK 3 T11: 1.2055 T22: 0.6281 REMARK 3 T33: 1.2897 T12: -0.1908 REMARK 3 T13: 1.5381 T23: 0.1712 REMARK 3 L TENSOR REMARK 3 L11: 0.1226 L22: 0.1880 REMARK 3 L33: 0.0056 L12: 0.2097 REMARK 3 L13: -0.0562 L23: 0.0115 REMARK 3 S TENSOR REMARK 3 S11: 0.0133 S12: 0.0673 S13: 0.3339 REMARK 3 S21: -0.2381 S22: 0.3058 S23: -0.7121 REMARK 3 S31: -0.5994 S32: 0.0202 S33: 0.1360 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 51 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.5026 6.5374 -2.8494 REMARK 3 T TENSOR REMARK 3 T11: 0.9293 T22: 0.5265 REMARK 3 T33: 0.8292 T12: -0.0440 REMARK 3 T13: 0.1063 T23: -0.2084 REMARK 3 L TENSOR REMARK 3 L11: 0.0135 L22: 0.0384 REMARK 3 L33: 0.0422 L12: 0.0450 REMARK 3 L13: 0.0251 L23: 0.0016 REMARK 3 S TENSOR REMARK 3 S11: 0.1921 S12: -0.6089 S13: -0.3891 REMARK 3 S21: 0.3035 S22: -0.1083 S23: 0.1797 REMARK 3 S31: 0.3855 S32: 0.1603 S33: 0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 66 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.4273 -22.2660 -3.7016 REMARK 3 T TENSOR REMARK 3 T11: 0.9531 T22: 0.6131 REMARK 3 T33: 0.7916 T12: -0.0810 REMARK 3 T13: -0.0290 T23: -0.1152 REMARK 3 L TENSOR REMARK 3 L11: -0.0135 L22: 0.0642 REMARK 3 L33: -0.0063 L12: -0.0574 REMARK 3 L13: 0.0421 L23: -0.0347 REMARK 3 S TENSOR REMARK 3 S11: 0.5551 S12: 0.1473 S13: 0.4615 REMARK 3 S21: 0.2595 S22: -0.6106 S23: 0.3420 REMARK 3 S31: 0.0740 S32: 0.0032 S33: 0.0005 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.8468 -15.5065 17.0667 REMARK 3 T TENSOR REMARK 3 T11: 0.7699 T22: 0.9122 REMARK 3 T33: 0.5827 T12: -0.0498 REMARK 3 T13: 0.1346 T23: -0.2147 REMARK 3 L TENSOR REMARK 3 L11: 0.6877 L22: 1.0076 REMARK 3 L33: 0.8348 L12: 0.3291 REMARK 3 L13: -0.3674 L23: -0.7976 REMARK 3 S TENSOR REMARK 3 S11: 0.1321 S12: 0.1041 S13: -0.2886 REMARK 3 S21: 0.0108 S22: -0.0542 S23: -0.1433 REMARK 3 S31: 0.0192 S32: -0.2477 S33: 0.0002 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 86 THROUGH 165 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.0105 -46.7953 5.9701 REMARK 3 T TENSOR REMARK 3 T11: 0.6737 T22: 0.3928 REMARK 3 T33: 0.5135 T12: 0.0235 REMARK 3 T13: 0.0209 T23: -0.2290 REMARK 3 L TENSOR REMARK 3 L11: 0.6590 L22: 0.3978 REMARK 3 L33: 1.1003 L12: 0.3525 REMARK 3 L13: -0.1302 L23: 0.3655 REMARK 3 S TENSOR REMARK 3 S11: -0.0598 S12: -0.0104 S13: 0.2000 REMARK 3 S21: -0.0431 S22: -0.0151 S23: -0.1736 REMARK 3 S31: -0.1500 S32: -0.2052 S33: -0.0007 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UFG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1000242930. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 273.15 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.105100 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21775 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.929 REMARK 200 RESOLUTION RANGE LOW (A) : 172.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.87500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 4000, 50 MM HEPES PH 7.0, 150 REMARK 280 MM KCL, 40 MM MGCL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.37700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.18850 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 129.56550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -100.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 G A 45 REMARK 465 G A 46 REMARK 465 U A 47 REMARK 465 U A 48 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O6 G A 37 O2' G A 56 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GTP A 1 C3' - O3' - P ANGL. DEV. = -17.9 DEGREES REMARK 500 G A 2 O3' - P - OP2 ANGL. DEV. = 7.2 DEGREES REMARK 500 G A 2 O3' - P - OP1 ANGL. DEV. = -16.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 103 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C B 57 OP1 REMARK 620 2 C B 57 OP2 47.1 REMARK 620 3 A A 118 OP1 104.8 70.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A B 77 OP1 REMARK 620 2 U A 160 O4 83.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 134 O6 REMARK 620 2 G A 135 O6 70.4 REMARK 620 3 U A 157 O4 93.7 80.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 211 DBREF 6UFG B 1 77 PDB 6UFG 6UFG 1 77 DBREF 6UFG A 1 166 PDB 6UFG 6UFG 1 166 SEQRES 1 B 77 G G G C C U A U A G C U C SEQRES 2 B 77 A G G C G G U U A G A G C SEQRES 3 B 77 G C U U C G C U G A U A A SEQRES 4 B 77 C G A A G A G G U C G G A SEQRES 5 B 77 G G U U C A A G U C C U C SEQRES 6 B 77 C U A G G C C C G C C A SEQRES 1 A 166 GTP G C A U C G A U C C G G SEQRES 2 A 166 C G A U C A C C G G G G A SEQRES 3 A 166 G C C U U C G G A A G A A SEQRES 4 A 166 C G G C C G G U U A G G C SEQRES 5 A 166 C C A G U A G A A C C G A SEQRES 6 A 166 A C G G G U U G G C C C G SEQRES 7 A 166 U C A C A G C C U C A A G SEQRES 8 A 166 U C G A G C G G C C G C G SEQRES 9 A 166 C G A A A G C G U G G C A SEQRES 10 A 166 A G C G G G G U G G C A C SEQRES 11 A 166 C G C G G C G U U C G C G SEQRES 12 A 166 C G A A A G C G U G G C G SEQRES 13 A 166 U C G U C C C C G CCC HET GTP A 1 32 HET CCC A 166 23 HET MG B 101 1 HET MG B 102 1 HET K B 103 1 HET K B 104 1 HET MG A 201 1 HET MG A 202 1 HET MG A 203 1 HET MG A 204 1 HET MG A 205 1 HET MG A 206 1 HET MG A 207 1 HET MG A 208 1 HET MG A 209 1 HET K A 210 1 HET K A 211 1 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM CCC CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE HETNAM MG MAGNESIUM ION HETNAM K POTASSIUM ION FORMUL 2 GTP C10 H16 N5 O14 P3 FORMUL 2 CCC C9 H13 N3 O10 P2 FORMUL 3 MG 11(MG 2+) FORMUL 5 K 4(K 1+) LINK O3' GTP A 1 P G A 2 1555 1555 1.56 LINK O3' G A 165 P CCC A 166 1555 1555 1.60 LINK OP1 C B 57 K K B 103 1555 1555 3.48 LINK OP2 C B 57 K K B 103 1555 1555 2.72 LINK OP1 A B 77 MG MG A 201 1555 1555 2.36 LINK K K B 103 OP1 A A 118 1545 1555 2.67 LINK K K B 104 OP1 A A 117 1545 1555 2.61 LINK OP2 A A 35 K K A 210 1555 1555 2.71 LINK OP2 A A 58 K K A 211 1555 1555 2.75 LINK OP1 A A 90 MG MG A 208 1555 1555 2.92 LINK OP2 G A 94 MG MG A 204 1555 1555 2.45 LINK OP1 G A 94 MG MG A 205 1555 1555 2.02 LINK O6 G A 134 MG MG A 203 1555 1555 3.00 LINK O6 G A 135 MG MG A 203 1555 1555 2.47 LINK O4 U A 157 MG MG A 203 1555 1555 2.80 LINK O4 U A 160 MG MG A 201 1555 1555 2.80 SITE 1 AC1 2 U B 8 U B 12 SITE 1 AC2 1 G B 69 SITE 1 AC3 2 A A 118 C B 57 SITE 1 AC4 2 A A 117 U B 56 SITE 1 AC5 4 C A 131 G A 132 U A 160 A B 77 SITE 1 AC6 2 G A 70 C A 82 SITE 1 AC7 5 G A 134 G A 135 C A 136 G A 156 SITE 2 AC7 5 U A 157 SITE 1 AC8 1 G A 94 SITE 1 AC9 2 C A 93 G A 94 SITE 1 AD1 1 G A 121 SITE 1 AD2 2 C A 88 A A 90 SITE 1 AD3 2 U A 87 A A 90 SITE 1 AD4 1 A A 35 SITE 1 AD5 1 A A 58 CRYST1 77.209 77.209 172.754 90.00 90.00 90.00 P 41 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012952 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012952 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005789 0.00000