HEADER IMMUNE SYSTEM 26-SEP-19 6UG7 TITLE COMPLEX OF CH28/11 FAB AND SSEA-4 (TETRAGONAL FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CH28/11 FAB LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CH28/11 FAB HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: EXPI293; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: MOUSE; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: EXPI293 KEYWDS IMMUNOGLOBULIN, CHIMERIC ANTIBODY, ANTIGEN BINDING FRAGMENT, SSEA-4, KEYWDS 2 COMPLEX, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR C.SOLIMAN,P.A.RAMSLAND REVDAT 5 11-OCT-23 6UG7 1 HETSYN LINK REVDAT 4 29-JUL-20 6UG7 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 05-FEB-20 6UG7 1 JRNL REVDAT 2 01-JAN-20 6UG7 1 JRNL REVDAT 1 18-DEC-19 6UG7 0 JRNL AUTH C.SOLIMAN,J.X.CHUA,M.VANKEMMELBEKE,R.S.MCINTOSH,A.J.GUY, JRNL AUTH 2 I.SPENDLOVE,L.G.DURRANT,P.A.RAMSLAND JRNL TITL THE TERMINAL SIALIC ACID OF STAGE-SPECIFIC EMBRYONIC JRNL TITL 2 ANTIGEN-4 HAS A CRUCIAL ROLE IN BINDING TO A JRNL TITL 3 CANCER-TARGETING ANTIBODY. JRNL REF J.BIOL.CHEM. V. 295 1009 2020 JRNL REFN ESSN 1083-351X JRNL PMID 31831622 JRNL DOI 10.1074/JBC.RA119.011518 REMARK 2 REMARK 2 RESOLUTION. 1.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 84916 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.400 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.52 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5908 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 142 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3192 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 119 REMARK 3 SOLVENT ATOMS : 594 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.30000 REMARK 3 B22 (A**2) : 0.30000 REMARK 3 B33 (A**2) : -0.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.064 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.066 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3469 ; 0.018 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3153 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4739 ; 1.894 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7355 ; 3.789 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 449 ; 6.522 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;33.863 ;24.750 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 543 ;11.602 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;25.363 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 553 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3829 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 739 ; 0.019 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1733 ; 1.861 ; 2.157 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1732 ; 1.854 ; 2.155 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2173 ; 2.743 ; 3.228 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6UG7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1000244491. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.954 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84916 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.520 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1A7N, 3IU4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, SODIUM ACETATE, AMMONIUM REMARK 280 SULFATE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 117.02000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 33.89750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 33.89750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 58.51000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 33.89750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 33.89750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 175.53000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 33.89750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.89750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 58.51000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 33.89750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.89750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 175.53000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 117.02000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU L 212 REMARK 465 CYS L 213 REMARK 465 LYS H 133 REMARK 465 SER H 134 REMARK 465 THR H 135 REMARK 465 SER H 136 REMARK 465 GLY H 137 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG H 68 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH L 553 O HOH L 607 2.01 REMARK 500 O PRO H 9 O HOH H 401 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG L 75 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG L 107 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 CYS H 200 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER L 40 19.85 50.62 REMARK 500 THR L 50 -45.78 74.65 REMARK 500 SER H 15 -4.80 75.75 REMARK 500 SER H 15 -9.28 79.64 REMARK 500 REMARK 500 REMARK: NULL DBREF 6UG7 L 1 213 PDB 6UG7 6UG7 1 213 DBREF 6UG7 H 1 218 PDB 6UG7 6UG7 1 218 SEQRES 1 L 213 GLU ASN VAL LEU THR GLN SER PRO ALA ILE MET SER ALA SEQRES 2 L 213 SER PRO GLY GLU LYS VAL THR MET THR CYS SER ALA SER SEQRES 3 L 213 SER SER VAL ASN TYR MET HIS TRP TYR GLN GLN LYS SER SEQRES 4 L 213 SER THR SER PRO LYS LEU TRP ILE TYR ASP THR SER LYS SEQRES 5 L 213 LEU ALA SER GLY VAL PRO GLY ARG PHE SER GLY SER GLY SEQRES 6 L 213 SER GLY ASN SER TYR SER LEU THR ILE ARG THR MET GLU SEQRES 7 L 213 ALA GLU ASP VAL ALA THR TYR PHE CYS PHE GLN ALA SER SEQRES 8 L 213 GLY TYR PRO LEU THR PHE GLY GLY GLY THR LYS LEU GLU SEQRES 9 L 213 LEU LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE PHE SEQRES 10 L 213 PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SER SEQRES 11 L 213 VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU ALA SEQRES 12 L 213 LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER GLY SEQRES 13 L 213 ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS ASP SEQRES 14 L 213 SER THR TYR SER LEU SER SER THR LEU THR LEU SER LYS SEQRES 15 L 213 ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU VAL SEQRES 16 L 213 THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER PHE SEQRES 17 L 213 ASN ARG GLY GLU CYS SEQRES 1 H 218 GLN VAL GLN LEU LYS GLU SER GLY PRO GLY LEU VAL ALA SEQRES 2 H 218 PRO SER GLN SER LEU SER ILE THR CYS THR VAL SER GLY SEQRES 3 H 218 PHE SER LEU ASN SER TYR GLY VAL SER TRP VAL ARG GLN SEQRES 4 H 218 PRO PRO GLY LYS GLY LEU GLU TRP LEU GLY VAL ILE TRP SEQRES 5 H 218 GLY ASP GLY SER THR ASN TYR HIS SER ALA LEU MET SER SEQRES 6 H 218 ARG LEU ARG ILE SER LYS ASP ASN SER LYS ARG GLN VAL SEQRES 7 H 218 PHE LEU LYS LEU ASN SER LEU GLN THR ASP ASP THR ALA SEQRES 8 H 218 THR TYR TYR CYS THR LYS PRO GLY SER GLY TYR ALA PHE SEQRES 9 H 218 ALA TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SER SEQRES 10 H 218 ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SEQRES 11 H 218 SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY SEQRES 12 H 218 CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SEQRES 13 H 218 SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR SEQRES 14 H 218 PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SEQRES 15 H 218 SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR SEQRES 16 H 218 GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN SEQRES 17 H 218 THR LYS VAL ASP LYS LYS VAL GLU PRO ALA HET BGC A 1 12 HET GAL A 2 11 HET GLA A 3 11 HET NGA A 4 14 HET GAL A 5 11 HET SIA A 6 20 HET EDO L 301 4 HET EDO L 302 4 HET SO4 L 303 5 HET EDO H 301 4 HET EDO H 302 4 HET EDO H 303 4 HET SO4 H 304 5 HET SO4 H 305 5 HET SO4 H 306 5 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM GLA ALPHA-D-GALACTOPYRANOSE HETNAM NGA 2-ACETAMIDO-2-DEOXY-BETA-D-GALACTOPYRANOSE HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN GLA ALPHA-D-GALACTOSE; D-GALACTOSE; GALACTOSE; ALPHA D- HETSYN 2 GLA GALACTOSE HETSYN NGA N-ACETYL-BETA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NGA BETA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 NGA ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-D-GALACTOSAMINE HETSYN SIA N-ACETYLNEURAMINIC ACID; SIALIC ACID; ALPHA-SIALIC HETSYN 2 SIA ACID; O-SIALIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 3 BGC C6 H12 O6 FORMUL 3 GAL 2(C6 H12 O6) FORMUL 3 GLA C6 H12 O6 FORMUL 3 NGA C8 H15 N O6 FORMUL 3 SIA C11 H19 N O9 FORMUL 4 EDO 5(C2 H6 O2) FORMUL 6 SO4 4(O4 S 2-) FORMUL 13 HOH *594(H2 O) HELIX 1 AA1 GLU L 78 VAL L 82 5 5 HELIX 2 AA2 SER L 120 SER L 126 1 7 HELIX 3 AA3 LYS L 182 GLU L 186 1 5 HELIX 4 AA4 SER H 61 MET H 64 5 4 HELIX 5 AA5 GLN H 86 THR H 90 5 5 HELIX 6 AA6 SER H 100 TYR H 102 5 3 HELIX 7 AA7 SER H 160 ALA H 162 5 3 HELIX 8 AA8 SER H 191 LEU H 193 5 3 HELIX 9 AA9 LYS H 205 ASN H 208 5 4 SHEET 1 AA1 4 LEU L 4 SER L 7 0 SHEET 2 AA1 4 VAL L 19 ALA L 25 -1 O THR L 22 N SER L 7 SHEET 3 AA1 4 SER L 69 ILE L 74 -1 O TYR L 70 N CYS L 23 SHEET 4 AA1 4 PHE L 61 SER L 66 -1 N SER L 62 O THR L 73 SHEET 1 AA2 6 ILE L 10 ALA L 13 0 SHEET 2 AA2 6 THR L 101 LEU L 105 1 O GLU L 104 N MET L 11 SHEET 3 AA2 6 ALA L 83 GLN L 89 -1 N ALA L 83 O LEU L 103 SHEET 4 AA2 6 HIS L 33 GLN L 37 -1 N GLN L 37 O THR L 84 SHEET 5 AA2 6 LYS L 44 TYR L 48 -1 O ILE L 47 N TRP L 34 SHEET 6 AA2 6 LYS L 52 LEU L 53 -1 O LYS L 52 N TYR L 48 SHEET 1 AA3 4 ILE L 10 ALA L 13 0 SHEET 2 AA3 4 THR L 101 LEU L 105 1 O GLU L 104 N MET L 11 SHEET 3 AA3 4 ALA L 83 GLN L 89 -1 N ALA L 83 O LEU L 103 SHEET 4 AA3 4 THR L 96 PHE L 97 -1 O THR L 96 N GLN L 89 SHEET 1 AA4 4 SER L 113 PHE L 117 0 SHEET 2 AA4 4 THR L 128 PHE L 138 -1 O ASN L 136 N SER L 113 SHEET 3 AA4 4 TYR L 172 SER L 181 -1 O LEU L 174 N LEU L 135 SHEET 4 AA4 4 SER L 158 VAL L 162 -1 N SER L 161 O SER L 175 SHEET 1 AA5 4 ALA L 152 LEU L 153 0 SHEET 2 AA5 4 LYS L 144 VAL L 149 -1 N VAL L 149 O ALA L 152 SHEET 3 AA5 4 VAL L 190 THR L 196 -1 O GLU L 194 N GLN L 146 SHEET 4 AA5 4 VAL L 204 ASN L 209 -1 O VAL L 204 N VAL L 195 SHEET 1 AA6 4 GLN H 3 SER H 7 0 SHEET 2 AA6 4 LEU H 18 SER H 25 -1 O THR H 23 N LYS H 5 SHEET 3 AA6 4 GLN H 77 LEU H 82 -1 O VAL H 78 N CYS H 22 SHEET 4 AA6 4 LEU H 67 ASP H 72 -1 N SER H 70 O PHE H 79 SHEET 1 AA7 6 LEU H 11 VAL H 12 0 SHEET 2 AA7 6 THR H 111 VAL H 115 1 O THR H 114 N VAL H 12 SHEET 3 AA7 6 ALA H 91 PRO H 98 -1 N ALA H 91 O VAL H 113 SHEET 4 AA7 6 VAL H 34 GLN H 39 -1 N VAL H 37 O TYR H 94 SHEET 5 AA7 6 GLU H 46 ILE H 51 -1 O LEU H 48 N TRP H 36 SHEET 6 AA7 6 THR H 57 TYR H 59 -1 O ASN H 58 N VAL H 50 SHEET 1 AA8 4 LEU H 11 VAL H 12 0 SHEET 2 AA8 4 THR H 111 VAL H 115 1 O THR H 114 N VAL H 12 SHEET 3 AA8 4 ALA H 91 PRO H 98 -1 N ALA H 91 O VAL H 113 SHEET 4 AA8 4 PHE H 104 TRP H 107 -1 O TYR H 106 N LYS H 97 SHEET 1 AA9 4 SER H 124 LEU H 128 0 SHEET 2 AA9 4 THR H 139 TYR H 149 -1 O LYS H 147 N SER H 124 SHEET 3 AA9 4 TYR H 180 PRO H 189 -1 O LEU H 182 N VAL H 146 SHEET 4 AA9 4 VAL H 167 THR H 169 -1 N HIS H 168 O VAL H 185 SHEET 1 AB1 4 SER H 124 LEU H 128 0 SHEET 2 AB1 4 THR H 139 TYR H 149 -1 O LYS H 147 N SER H 124 SHEET 3 AB1 4 TYR H 180 PRO H 189 -1 O LEU H 182 N VAL H 146 SHEET 4 AB1 4 VAL H 173 LEU H 174 -1 N VAL H 173 O SER H 181 SHEET 1 AB2 3 THR H 155 TRP H 158 0 SHEET 2 AB2 3 TYR H 198 HIS H 204 -1 O ASN H 201 N SER H 157 SHEET 3 AB2 3 THR H 209 VAL H 215 -1 O VAL H 211 N VAL H 202 SSBOND 1 CYS L 23 CYS L 87 1555 1555 2.23 SSBOND 2 CYS L 133 CYS L 193 1555 1555 2.01 SSBOND 3 CYS H 22 CYS H 95 1555 1555 2.16 SSBOND 4 CYS H 144 CYS H 200 1555 1555 2.04 LINK O4 BGC A 1 C1 GAL A 2 1555 1555 1.43 LINK O4 GAL A 2 C1 GLA A 3 1555 1555 1.39 LINK O3 GLA A 3 C1 NGA A 4 1555 1555 1.41 LINK O3 NGA A 4 C1 GAL A 5 1555 1555 1.44 LINK O3 GAL A 5 C2 SIA A 6 1555 1555 1.42 CISPEP 1 SER L 7 PRO L 8 0 -11.24 CISPEP 2 SER L 7 PRO L 8 0 -10.92 CISPEP 3 TYR L 93 PRO L 94 0 -3.25 CISPEP 4 TYR L 139 PRO L 140 0 5.33 CISPEP 5 PHE H 150 PRO H 151 0 -11.48 CISPEP 6 GLU H 152 PRO H 153 0 -0.70 CRYST1 67.795 67.795 234.040 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014750 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014750 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004273 0.00000