data_6UGG # _entry.id 6UGG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6UGG pdb_00006ugg 10.2210/pdb6ugg/pdb WWPDB D_1000244539 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6UGG _pdbx_database_status.recvd_initial_deposition_date 2019-09-26 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Chan, C.W.' 1 0000-0001-5472-4803 'Mondragon, A.' 2 0000-0002-0423-6323 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Rna _citation.journal_id_ASTM RNARFU _citation.journal_id_CSD 2122 _citation.journal_id_ISSN 1469-9001 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 26 _citation.language ? _citation.page_first 278 _citation.page_last 289 _citation.title ;Crystal structures of an unmodified bacterial tRNA reveal intrinsic structural flexibility and plasticity as general properties of unbound tRNAs. ; _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1261/rna.073478.119 _citation.pdbx_database_id_PubMed 31848215 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chan, C.W.' 1 ? primary 'Badong, D.' 2 ? primary 'Rajan, R.' 3 ? primary 'Mondragon, A.' 4 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 6UGG _cell.details ? _cell.formula_units_Z ? _cell.length_a 64.677 _cell.length_a_esd ? _cell.length_b 64.677 _cell.length_b_esd ? _cell.length_c 195.799 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UGG _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn tRNAasp 24815.684 2 ? ? ? ? 2 water nat water 18.015 23 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGAGCGGUAGUUCAGUCGGUUAGAAUACCUGCCUGUCACGCAGGGGGUCGCGGGUUCGAGUCCCGUCCGUUCCGCCA _entity_poly.pdbx_seq_one_letter_code_can GGAGCGGUAGUUCAGUCGGUUAGAAUACCUGCCUGUCACGCAGGGGGUCGCGGGUUCGAGUCCCGUCCGUUCCGCCA _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 G n 1 5 C n 1 6 G n 1 7 G n 1 8 U n 1 9 A n 1 10 G n 1 11 U n 1 12 U n 1 13 C n 1 14 A n 1 15 G n 1 16 U n 1 17 C n 1 18 G n 1 19 G n 1 20 U n 1 21 U n 1 22 A n 1 23 G n 1 24 A n 1 25 A n 1 26 U n 1 27 A n 1 28 C n 1 29 C n 1 30 U n 1 31 G n 1 32 C n 1 33 C n 1 34 U n 1 35 G n 1 36 U n 1 37 C n 1 38 A n 1 39 C n 1 40 G n 1 41 C n 1 42 A n 1 43 G n 1 44 G n 1 45 G n 1 46 G n 1 47 G n 1 48 U n 1 49 C n 1 50 G n 1 51 C n 1 52 G n 1 53 G n 1 54 G n 1 55 U n 1 56 U n 1 57 C n 1 58 G n 1 59 A n 1 60 G n 1 61 U n 1 62 C n 1 63 C n 1 64 C n 1 65 G n 1 66 U n 1 67 C n 1 68 C n 1 69 G n 1 70 U n 1 71 U n 1 72 C n 1 73 C n 1 74 G n 1 75 C n 1 76 C n 1 77 A n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 77 _pdbx_entity_src_syn.organism_scientific 'Escherichia coli' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 562 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code CP041919.1 _struct_ref.pdbx_db_accession 1710318528 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code GGAGCGGUAGUUCAGUCGGUUAGAAUACCUGCCUGUCACGCAGGGGGUCGCGGGUUCGAGUCCCGUCCGUUCCGCCA _struct_ref.pdbx_align_begin 3738965 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6UGG A 1 ? 77 ? 1710318528 3738965 ? 3738889 ? 0 76 2 1 6UGG B 1 ? 77 ? 1710318528 3738965 ? 3738889 ? 0 76 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6UGG _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.38 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 48.36 _exptl_crystal.description 'Clusters of arrow-like crystals. Single crystals excised from cluster.' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 287 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;2 uL 20 mg/ml E. coli tRNA(Asp) + 2 uL equilibration solution (50 mM sodium cacodylate, pH 7.5, 30% MPD, 10 mM spermine tetrahydrochloride, 300 mM sodium chloride, 300 mM potassium chloride) + 0.5 uL 0.25% w/v p-coumaric acid, 0.25% w/v phenylurea, 0.25% w/v poly(3-hydroxybutyric acid), 0.25% w/v sulfaguanidine, 0.02 M sodium HEPES, pH 6.8 ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details 'Crystals were flash frozen directly in mother liquor with liquid nitrogen' _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details Monochromator _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-12-14 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0782 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 21-ID-D' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0782 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 21-ID-D _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6UGG _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.95 _reflns.d_resolution_low 48.62 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 35638 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 94. _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 30 _reflns.pdbx_Rmerge_I_obs 0.155 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 15.8 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.158 _reflns.pdbx_Rpim_I_all 0.029 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.992 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.95 _reflns_shell.d_res_low 2.056 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.8 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 55102 _reflns_shell.percent_possible_all 50.8 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 2.683 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 33.7 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 2.724 _reflns_shell.pdbx_Rpim_I_all 0.468 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.488 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 2.3000 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][2] 2.3000 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] -4.5900 _refine.B_iso_max 123.640 _refine.B_iso_mean 50.9990 _refine.B_iso_min 22.580 _refine.correlation_coeff_Fo_to_Fc 0.9410 _refine.correlation_coeff_Fo_to_Fc_free 0.9290 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6UGG _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.9500 _refine.ls_d_res_low 48.6200 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 30070 _refine.ls_number_reflns_R_free 1469 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 88.5000 _refine.ls_percent_reflns_R_free 4.7000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2164 _refine.ls_R_factor_R_free 0.2381 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2154 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB entry 1EHZ' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.0420 _refine.pdbx_overall_ESU_R_Free 0.0350 _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 2.4420 _refine.overall_SU_ML 0.0750 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.9500 _refine_hist.d_res_low 48.6200 _refine_hist.number_atoms_solvent 23 _refine_hist.number_atoms_total 3311 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 154 _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent 36.61 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 3288 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.003 0.011 3670 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 1506 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 0.850 1.280 5722 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.298 3.000 3662 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 0.070 0.200 616 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 0.020 1832 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 822 ? r_gen_planes_other ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.9500 _refine_ls_shell.d_res_low 2.0010 _refine_ls_shell.number_reflns_all 275 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 13 _refine_ls_shell.number_reflns_R_work 262 _refine_ls_shell.percent_reflns_obs 10.5300 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.5020 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.2860 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6UGG _struct.title 'Structure of unmodified E. coli tRNA(Asp)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6UGG _struct_keywords.text 'tRNA RNA unmodified, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 73 N3 ? ? A G 0 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 73 O2 ? ? A G 0 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 73 N4 ? ? A G 0 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 72 N3 ? ? A G 1 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 72 O2 ? ? A G 1 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 72 N4 ? ? A G 1 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 71 N3 ? ? A A 2 A U 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 71 O4 ? ? A A 2 A U 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N1 ? ? ? 1_555 A U 70 O2 ? ? A G 3 A U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog10 hydrog ? ? A G 4 O6 ? ? ? 1_555 A U 70 N3 ? ? A G 3 A U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog11 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 69 N1 ? ? A C 4 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 69 O6 ? ? A C 4 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 69 N2 ? ? A C 4 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 68 N3 ? ? A G 5 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 68 O2 ? ? A G 5 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 68 N4 ? ? A G 5 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 67 N3 ? ? A G 6 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 67 O2 ? ? A G 6 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 67 N4 ? ? A G 6 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 14 N7 ? ? A U 7 A A 13 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog21 hydrog ? ? A U 8 O2 ? ? ? 1_555 A A 14 N6 ? ? A U 7 A A 13 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog22 hydrog ? ? A A 9 N6 ? ? ? 1_555 A A 24 N7 ? ? A A 8 A A 23 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog23 hydrog ? ? A A 9 N7 ? ? ? 1_555 A A 24 N6 ? ? A A 8 A A 23 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog24 hydrog ? ? A G 10 N1 ? ? ? 1_555 A U 26 O2 ? ? A G 9 A U 25 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog25 hydrog ? ? A G 10 O6 ? ? ? 1_555 A U 26 N3 ? ? A G 9 A U 25 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog26 hydrog ? ? A G 10 N7 ? ? ? 1_555 A G 46 N2 ? ? A G 9 A G 45 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog27 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 25 N1 ? ? A U 10 A A 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 25 N6 ? ? A U 10 A A 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 24 N1 ? ? A U 11 A A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 24 N6 ? ? A U 11 A A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 23 N1 ? ? A C 12 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 23 O6 ? ? A C 12 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 23 N2 ? ? A C 12 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 49 O2 ? ? A G 14 A C 48 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog35 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 49 N3 ? ? A G 14 A C 48 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog36 hydrog ? ? A G 18 N1 ? ? ? 1_555 A U 56 O2 ? ? A G 17 A U 55 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog37 hydrog ? ? A G 19 N1 ? ? ? 1_555 A C 57 N3 ? ? A G 18 A C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 19 N2 ? ? ? 1_555 A C 57 O2 ? ? A G 18 A C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 19 O6 ? ? ? 1_555 A C 57 N4 ? ? A G 18 A C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 23 N7 ? ? ? 1_555 A G 47 N1 ? ? A G 22 A G 46 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog41 hydrog ? ? A G 23 O6 ? ? ? 1_555 A G 47 N2 ? ? A G 22 A G 46 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog42 hydrog ? ? A A 27 N1 ? ? ? 1_555 A G 45 N1 ? ? A A 26 A G 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog43 hydrog ? ? A A 27 N6 ? ? ? 1_555 A G 45 O6 ? ? A A 26 A G 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog44 hydrog ? ? A C 28 N3 ? ? ? 1_555 A G 44 N1 ? ? A C 27 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 28 N4 ? ? ? 1_555 A G 44 O6 ? ? A C 27 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 28 O2 ? ? ? 1_555 A G 44 N2 ? ? A C 27 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 29 N3 ? ? ? 1_555 A G 43 N1 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 29 N4 ? ? ? 1_555 A G 43 O6 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 29 O2 ? ? ? 1_555 A G 43 N2 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A U 30 N3 ? ? ? 1_555 A A 42 N1 ? ? A U 29 A A 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A U 30 O4 ? ? ? 1_555 A A 42 N6 ? ? A U 29 A A 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 31 N1 ? ? ? 1_555 A C 41 N3 ? ? A G 30 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 31 N2 ? ? ? 1_555 A C 41 O2 ? ? A G 30 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 31 O6 ? ? ? 1_555 A C 41 N4 ? ? A G 30 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A C 32 N3 ? ? ? 1_555 A G 40 N1 ? ? A C 31 A G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 32 N4 ? ? ? 1_555 A G 40 O6 ? ? A C 31 A G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 32 O2 ? ? ? 1_555 A G 40 N2 ? ? A C 31 A G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 33 O2 ? ? ? 1_555 A C 39 N4 ? ? A C 32 A C 38 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog59 hydrog ? ? A U 34 O2 ? ? ? 1_555 A C 37 N4 ? ? A U 33 A C 36 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog60 hydrog ? ? A G 50 N1 ? ? ? 1_555 A U 66 O2 ? ? A G 49 A U 65 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog61 hydrog ? ? A G 50 O6 ? ? ? 1_555 A U 66 N3 ? ? A G 49 A U 65 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog62 hydrog ? ? A C 51 N3 ? ? ? 1_555 A G 65 N1 ? ? A C 50 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A C 51 N4 ? ? ? 1_555 A G 65 O6 ? ? A C 50 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A C 51 O2 ? ? ? 1_555 A G 65 N2 ? ? A C 50 A G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 52 N1 ? ? ? 1_555 A C 64 N3 ? ? A G 51 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 52 N2 ? ? ? 1_555 A C 64 O2 ? ? A G 51 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 52 O6 ? ? ? 1_555 A C 64 N4 ? ? A G 51 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 53 N1 ? ? ? 1_555 A C 63 N3 ? ? A G 52 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A G 53 N2 ? ? ? 1_555 A C 63 O2 ? ? A G 52 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A G 53 O6 ? ? ? 1_555 A C 63 N4 ? ? A G 52 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A G 54 N1 ? ? ? 1_555 A C 62 N3 ? ? A G 53 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A G 54 N2 ? ? ? 1_555 A C 62 O2 ? ? A G 53 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A G 54 O6 ? ? ? 1_555 A C 62 N4 ? ? A G 53 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A U 55 N3 ? ? ? 1_555 A A 59 N7 ? ? A U 54 A A 58 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog75 hydrog ? ? A U 55 O2 ? ? ? 1_555 A A 59 N6 ? ? A U 54 A A 58 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog76 hydrog ? ? B G 1 N1 ? ? ? 1_555 B C 73 N3 ? ? B G 0 B C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? B G 1 N2 ? ? ? 1_555 B C 73 O2 ? ? B G 0 B C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? B G 1 O6 ? ? ? 1_555 B C 73 N4 ? ? B G 0 B C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? B G 2 N1 ? ? ? 1_555 B C 72 N3 ? ? B G 1 B C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? B G 2 N2 ? ? ? 1_555 B C 72 O2 ? ? B G 1 B C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? B G 2 O6 ? ? ? 1_555 B C 72 N4 ? ? B G 1 B C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? B A 3 N1 ? ? ? 1_555 B U 71 N3 ? ? B A 2 B U 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? B A 3 N6 ? ? ? 1_555 B U 71 O4 ? ? B A 2 B U 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? B G 4 N1 ? ? ? 1_555 B U 70 O2 ? ? B G 3 B U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog85 hydrog ? ? B G 4 O6 ? ? ? 1_555 B U 70 N3 ? ? B G 3 B U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog86 hydrog ? ? B C 5 N3 ? ? ? 1_555 B G 69 N1 ? ? B C 4 B G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? B C 5 N4 ? ? ? 1_555 B G 69 O6 ? ? B C 4 B G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B C 5 O2 ? ? ? 1_555 B G 69 N2 ? ? B C 4 B G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? B G 6 N1 ? ? ? 1_555 B C 68 N3 ? ? B G 5 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? B G 6 N2 ? ? ? 1_555 B C 68 O2 ? ? B G 5 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? B G 6 O6 ? ? ? 1_555 B C 68 N4 ? ? B G 5 B C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? B G 7 N1 ? ? ? 1_555 B C 67 N3 ? ? B G 6 B C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? B G 7 N2 ? ? ? 1_555 B C 67 O2 ? ? B G 6 B C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? B G 7 O6 ? ? ? 1_555 B C 67 N4 ? ? B G 6 B C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? B U 8 N3 ? ? ? 1_555 B A 14 N7 ? ? B U 7 B A 13 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog96 hydrog ? ? B U 8 O2 ? ? ? 1_555 B A 14 N6 ? ? B U 7 B A 13 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog97 hydrog ? ? B A 9 N6 ? ? ? 1_555 B A 24 N7 ? ? B A 8 B A 23 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog98 hydrog ? ? B A 9 N7 ? ? ? 1_555 B A 24 N6 ? ? B A 8 B A 23 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog99 hydrog ? ? B G 10 N1 ? ? ? 1_555 B U 26 O2 ? ? B G 9 B U 25 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog100 hydrog ? ? B G 10 O6 ? ? ? 1_555 B U 26 N3 ? ? B G 9 B U 25 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog101 hydrog ? ? B G 10 N7 ? ? ? 1_555 B G 46 N2 ? ? B G 9 B G 45 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog102 hydrog ? ? B U 11 N3 ? ? ? 1_555 B A 25 N1 ? ? B U 10 B A 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? B U 11 O4 ? ? ? 1_555 B A 25 N6 ? ? B U 10 B A 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? B U 12 N3 ? ? ? 1_555 B A 24 N1 ? ? B U 11 B A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? B U 12 O4 ? ? ? 1_555 B A 24 N6 ? ? B U 11 B A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? B C 13 N3 ? ? ? 1_555 B G 23 N1 ? ? B C 12 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? B C 13 N4 ? ? ? 1_555 B G 23 O6 ? ? B C 12 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? B C 13 O2 ? ? ? 1_555 B G 23 N2 ? ? B C 12 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? B G 15 N1 ? ? ? 1_555 B C 49 O2 ? ? B G 14 B C 48 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog110 hydrog ? ? B G 15 N2 ? ? ? 1_555 B C 49 N3 ? ? B G 14 B C 48 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog111 hydrog ? ? B G 18 N1 ? ? ? 1_555 B U 56 O2 ? ? B G 17 B U 55 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog112 hydrog ? ? B G 19 N1 ? ? ? 1_555 B C 57 N3 ? ? B G 18 B C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog113 hydrog ? ? B G 19 N2 ? ? ? 1_555 B C 57 O2 ? ? B G 18 B C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog114 hydrog ? ? B G 19 O6 ? ? ? 1_555 B C 57 N4 ? ? B G 18 B C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog115 hydrog ? ? B G 23 N7 ? ? ? 1_555 B G 47 N1 ? ? B G 22 B G 46 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog116 hydrog ? ? B G 23 O6 ? ? ? 1_555 B G 47 N2 ? ? B G 22 B G 46 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog117 hydrog ? ? B A 27 N1 ? ? ? 1_555 B G 45 N1 ? ? B A 26 B G 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog118 hydrog ? ? B A 27 N6 ? ? ? 1_555 B G 45 O6 ? ? B A 26 B G 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog119 hydrog ? ? B C 28 N3 ? ? ? 1_555 B G 44 N1 ? ? B C 27 B G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog120 hydrog ? ? B C 28 N4 ? ? ? 1_555 B G 44 O6 ? ? B C 27 B G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog121 hydrog ? ? B C 28 O2 ? ? ? 1_555 B G 44 N2 ? ? B C 27 B G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog122 hydrog ? ? B C 29 N3 ? ? ? 1_555 B G 43 N1 ? ? B C 28 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog123 hydrog ? ? B C 29 N4 ? ? ? 1_555 B G 43 O6 ? ? B C 28 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog124 hydrog ? ? B C 29 O2 ? ? ? 1_555 B G 43 N2 ? ? B C 28 B G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog125 hydrog ? ? B U 30 N3 ? ? ? 1_555 B A 42 N1 ? ? B U 29 B A 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog126 hydrog ? ? B U 30 O4 ? ? ? 1_555 B A 42 N6 ? ? B U 29 B A 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog127 hydrog ? ? B G 31 N1 ? ? ? 1_555 B C 41 N3 ? ? B G 30 B C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog128 hydrog ? ? B G 31 N2 ? ? ? 1_555 B C 41 O2 ? ? B G 30 B C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog129 hydrog ? ? B G 31 O6 ? ? ? 1_555 B C 41 N4 ? ? B G 30 B C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog130 hydrog ? ? B C 32 N3 ? ? ? 1_555 B G 40 N1 ? ? B C 31 B G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog131 hydrog ? ? B C 32 N4 ? ? ? 1_555 B G 40 O6 ? ? B C 31 B G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog132 hydrog ? ? B C 32 O2 ? ? ? 1_555 B G 40 N2 ? ? B C 31 B G 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog133 hydrog ? ? B C 33 O2 ? ? ? 1_555 B C 39 N4 ? ? B C 32 B C 38 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog134 hydrog ? ? B G 50 N1 ? ? ? 1_555 B U 66 O2 ? ? B G 49 B U 65 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog135 hydrog ? ? B G 50 O6 ? ? ? 1_555 B U 66 N3 ? ? B G 49 B U 65 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog136 hydrog ? ? B C 51 N3 ? ? ? 1_555 B G 65 N1 ? ? B C 50 B G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog137 hydrog ? ? B C 51 N4 ? ? ? 1_555 B G 65 O6 ? ? B C 50 B G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog138 hydrog ? ? B C 51 O2 ? ? ? 1_555 B G 65 N2 ? ? B C 50 B G 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog139 hydrog ? ? B G 52 N1 ? ? ? 1_555 B C 64 N3 ? ? B G 51 B C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog140 hydrog ? ? B G 52 N2 ? ? ? 1_555 B C 64 O2 ? ? B G 51 B C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog141 hydrog ? ? B G 52 O6 ? ? ? 1_555 B C 64 N4 ? ? B G 51 B C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog142 hydrog ? ? B G 53 N1 ? ? ? 1_555 B C 63 N3 ? ? B G 52 B C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog143 hydrog ? ? B G 53 N2 ? ? ? 1_555 B C 63 O2 ? ? B G 52 B C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog144 hydrog ? ? B G 53 O6 ? ? ? 1_555 B C 63 N4 ? ? B G 52 B C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog145 hydrog ? ? B G 54 N1 ? ? ? 1_555 B C 62 N3 ? ? B G 53 B C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog146 hydrog ? ? B G 54 N2 ? ? ? 1_555 B C 62 O2 ? ? B G 53 B C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog147 hydrog ? ? B G 54 O6 ? ? ? 1_555 B C 62 N4 ? ? B G 53 B C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog148 hydrog ? ? B U 55 N3 ? ? ? 1_555 B A 59 N7 ? ? B U 54 B A 58 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog149 hydrog ? ? B U 55 O2 ? ? ? 1_555 B A 59 N6 ? ? B U 54 B A 58 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 6UGG _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.015461 _atom_sites.fract_transf_matrix[1][2] 0.008927 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017853 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005107 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 0 0 G G A . n A 1 2 G 2 1 1 G G A . n A 1 3 A 3 2 2 A A A . n A 1 4 G 4 3 3 G G A . n A 1 5 C 5 4 4 C C A . n A 1 6 G 6 5 5 G G A . n A 1 7 G 7 6 6 G G A . n A 1 8 U 8 7 7 U U A . n A 1 9 A 9 8 8 A A A . n A 1 10 G 10 9 9 G G A . n A 1 11 U 11 10 10 U U A . n A 1 12 U 12 11 11 U U A . n A 1 13 C 13 12 12 C C A . n A 1 14 A 14 13 13 A A A . n A 1 15 G 15 14 14 G G A . n A 1 16 U 16 15 15 U U A . n A 1 17 C 17 16 16 C C A . n A 1 18 G 18 17 17 G G A . n A 1 19 G 19 18 18 G G A . n A 1 20 U 20 19 19 U U A . n A 1 21 U 21 20 20 U U A . n A 1 22 A 22 21 21 A A A . n A 1 23 G 23 22 22 G G A . n A 1 24 A 24 23 23 A A A . n A 1 25 A 25 24 24 A A A . n A 1 26 U 26 25 25 U U A . n A 1 27 A 27 26 26 A A A . n A 1 28 C 28 27 27 C C A . n A 1 29 C 29 28 28 C C A . n A 1 30 U 30 29 29 U U A . n A 1 31 G 31 30 30 G G A . n A 1 32 C 32 31 31 C C A . n A 1 33 C 33 32 32 C C A . n A 1 34 U 34 33 33 U U A . n A 1 35 G 35 34 34 G G A . n A 1 36 U 36 35 35 U U A . n A 1 37 C 37 36 36 C C A . n A 1 38 A 38 37 37 A A A . n A 1 39 C 39 38 38 C C A . n A 1 40 G 40 39 39 G G A . n A 1 41 C 41 40 40 C C A . n A 1 42 A 42 41 41 A A A . n A 1 43 G 43 42 42 G G A . n A 1 44 G 44 43 43 G G A . n A 1 45 G 45 44 44 G G A . n A 1 46 G 46 45 45 G G A . n A 1 47 G 47 46 46 G G A . n A 1 48 U 48 47 47 U U A . n A 1 49 C 49 48 48 C C A . n A 1 50 G 50 49 49 G G A . n A 1 51 C 51 50 50 C C A . n A 1 52 G 52 51 51 G G A . n A 1 53 G 53 52 52 G G A . n A 1 54 G 54 53 53 G G A . n A 1 55 U 55 54 54 U U A . n A 1 56 U 56 55 55 U U A . n A 1 57 C 57 56 56 C C A . n A 1 58 G 58 57 57 G G A . n A 1 59 A 59 58 58 A A A . n A 1 60 G 60 59 59 G G A . n A 1 61 U 61 60 60 U U A . n A 1 62 C 62 61 61 C C A . n A 1 63 C 63 62 62 C C A . n A 1 64 C 64 63 63 C C A . n A 1 65 G 65 64 64 G G A . n A 1 66 U 66 65 65 U U A . n A 1 67 C 67 66 66 C C A . n A 1 68 C 68 67 67 C C A . n A 1 69 G 69 68 68 G G A . n A 1 70 U 70 69 69 U U A . n A 1 71 U 71 70 70 U U A . n A 1 72 C 72 71 71 C C A . n A 1 73 C 73 72 72 C C A . n A 1 74 G 74 73 73 G G A . n A 1 75 C 75 74 74 C C A . n A 1 76 C 76 75 75 C C A . n A 1 77 A 77 76 76 A A A . n B 1 1 G 1 0 0 G G B . n B 1 2 G 2 1 1 G G B . n B 1 3 A 3 2 2 A A B . n B 1 4 G 4 3 3 G G B . n B 1 5 C 5 4 4 C C B . n B 1 6 G 6 5 5 G G B . n B 1 7 G 7 6 6 G G B . n B 1 8 U 8 7 7 U U B . n B 1 9 A 9 8 8 A A B . n B 1 10 G 10 9 9 G G B . n B 1 11 U 11 10 10 U U B . n B 1 12 U 12 11 11 U U B . n B 1 13 C 13 12 12 C C B . n B 1 14 A 14 13 13 A A B . n B 1 15 G 15 14 14 G G B . n B 1 16 U 16 15 15 U U B . n B 1 17 C 17 16 16 C C B . n B 1 18 G 18 17 17 G G B . n B 1 19 G 19 18 18 G G B . n B 1 20 U 20 19 19 U U B . n B 1 21 U 21 20 20 U U B . n B 1 22 A 22 21 21 A A B . n B 1 23 G 23 22 22 G G B . n B 1 24 A 24 23 23 A A B . n B 1 25 A 25 24 24 A A B . n B 1 26 U 26 25 25 U U B . n B 1 27 A 27 26 26 A A B . n B 1 28 C 28 27 27 C C B . n B 1 29 C 29 28 28 C C B . n B 1 30 U 30 29 29 U U B . n B 1 31 G 31 30 30 G G B . n B 1 32 C 32 31 31 C C B . n B 1 33 C 33 32 32 C C B . n B 1 34 U 34 33 33 U U B . n B 1 35 G 35 34 34 G G B . n B 1 36 U 36 35 35 U U B . n B 1 37 C 37 36 36 C C B . n B 1 38 A 38 37 37 A A B . n B 1 39 C 39 38 38 C C B . n B 1 40 G 40 39 39 G G B . n B 1 41 C 41 40 40 C C B . n B 1 42 A 42 41 41 A A B . n B 1 43 G 43 42 42 G G B . n B 1 44 G 44 43 43 G G B . n B 1 45 G 45 44 44 G G B . n B 1 46 G 46 45 45 G G B . n B 1 47 G 47 46 46 G G B . n B 1 48 U 48 47 47 U U B . n B 1 49 C 49 48 48 C C B . n B 1 50 G 50 49 49 G G B . n B 1 51 C 51 50 50 C C B . n B 1 52 G 52 51 51 G G B . n B 1 53 G 53 52 52 G G B . n B 1 54 G 54 53 53 G G B . n B 1 55 U 55 54 54 U U B . n B 1 56 U 56 55 55 U U B . n B 1 57 C 57 56 56 C C B . n B 1 58 G 58 57 57 G G B . n B 1 59 A 59 58 58 A A B . n B 1 60 G 60 59 59 G G B . n B 1 61 U 61 60 60 U U B . n B 1 62 C 62 61 61 C C B . n B 1 63 C 63 62 62 C C B . n B 1 64 C 64 63 63 C C B . n B 1 65 G 65 64 64 G G B . n B 1 66 U 66 65 65 U U B . n B 1 67 C 67 66 66 C C B . n B 1 68 C 68 67 67 C C B . n B 1 69 G 69 68 68 G G B . n B 1 70 U 70 69 69 U U B . n B 1 71 U 71 70 70 U U B . n B 1 72 C 72 71 71 C C B . n B 1 73 C 73 72 72 C C B . n B 1 74 G 74 73 73 G G B . n B 1 75 C 75 74 74 C C B . n B 1 76 C 76 75 75 C C B . n B 1 77 A 77 76 76 A A B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 101 12 HOH HOH A . C 2 HOH 2 102 14 HOH HOH A . C 2 HOH 3 103 8 HOH HOH A . C 2 HOH 4 104 2 HOH HOH A . C 2 HOH 5 105 3 HOH HOH A . C 2 HOH 6 106 15 HOH HOH A . C 2 HOH 7 107 22 HOH HOH A . D 2 HOH 1 101 16 HOH HOH B . D 2 HOH 2 102 5 HOH HOH B . D 2 HOH 3 103 23 HOH HOH B . D 2 HOH 4 104 17 HOH HOH B . D 2 HOH 5 105 19 HOH HOH B . D 2 HOH 6 106 7 HOH HOH B . D 2 HOH 7 107 11 HOH HOH B . D 2 HOH 8 108 6 HOH HOH B . D 2 HOH 9 109 18 HOH HOH B . D 2 HOH 10 110 1 HOH HOH B . D 2 HOH 11 111 4 HOH HOH B . D 2 HOH 12 112 9 HOH HOH B . D 2 HOH 13 113 10 HOH HOH B . D 2 HOH 14 114 21 HOH HOH B . D 2 HOH 15 115 20 HOH HOH B . D 2 HOH 16 116 13 HOH HOH B . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C 2 1 B,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-01-01 2 'Structure model' 1 1 2020-03-04 3 'Structure model' 1 2 2023-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 6 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.year' 5 2 'Structure model' '_citation_author.identifier_ORCID' 6 3 'Structure model' '_database_2.pdbx_DOI' 7 3 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0238 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? STARANISO ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P A G 0 ? ? OP3 A G 0 ? ? 1.486 1.607 -0.121 0.012 N 2 1 P B G 0 ? ? OP3 B G 0 ? ? 1.485 1.607 -0.122 0.012 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 U OP3 O N N 114 U P P N N 115 U OP1 O N N 116 U OP2 O N N 117 U "O5'" O N N 118 U "C5'" C N N 119 U "C4'" C N R 120 U "O4'" O N N 121 U "C3'" C N S 122 U "O3'" O N N 123 U "C2'" C N R 124 U "O2'" O N N 125 U "C1'" C N R 126 U N1 N N N 127 U C2 C N N 128 U O2 O N N 129 U N3 N N N 130 U C4 C N N 131 U O4 O N N 132 U C5 C N N 133 U C6 C N N 134 U HOP3 H N N 135 U HOP2 H N N 136 U "H5'" H N N 137 U "H5''" H N N 138 U "H4'" H N N 139 U "H3'" H N N 140 U "HO3'" H N N 141 U "H2'" H N N 142 U "HO2'" H N N 143 U "H1'" H N N 144 U H3 H N N 145 U H5 H N N 146 U H6 H N N 147 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 U OP3 P sing N N 118 U OP3 HOP3 sing N N 119 U P OP1 doub N N 120 U P OP2 sing N N 121 U P "O5'" sing N N 122 U OP2 HOP2 sing N N 123 U "O5'" "C5'" sing N N 124 U "C5'" "C4'" sing N N 125 U "C5'" "H5'" sing N N 126 U "C5'" "H5''" sing N N 127 U "C4'" "O4'" sing N N 128 U "C4'" "C3'" sing N N 129 U "C4'" "H4'" sing N N 130 U "O4'" "C1'" sing N N 131 U "C3'" "O3'" sing N N 132 U "C3'" "C2'" sing N N 133 U "C3'" "H3'" sing N N 134 U "O3'" "HO3'" sing N N 135 U "C2'" "O2'" sing N N 136 U "C2'" "C1'" sing N N 137 U "C2'" "H2'" sing N N 138 U "O2'" "HO2'" sing N N 139 U "C1'" N1 sing N N 140 U "C1'" "H1'" sing N N 141 U N1 C2 sing N N 142 U N1 C6 sing N N 143 U C2 O2 doub N N 144 U C2 N3 sing N N 145 U N3 C4 sing N N 146 U N3 H3 sing N N 147 U C4 O4 doub N N 148 U C4 C5 sing N N 149 U C5 C6 doub N N 150 U C5 H5 sing N N 151 U C6 H6 sing N N 152 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6UGG 'double helix' 6UGG 'a-form double helix' 6UGG 'parallel strands' 6UGG 'hairpin loop' 6UGG 'mismatched base pair' 6UGG 'four-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 73 1_555 -0.460 -0.081 0.000 -6.884 -7.156 -2.167 1 A_G0:C72_A A 0 ? A 72 ? 19 1 1 A G 2 1_555 A C 72 1_555 -0.473 -0.066 -0.181 -7.487 -11.938 -4.931 2 A_G1:C71_A A 1 ? A 71 ? 19 1 1 A A 3 1_555 A U 71 1_555 -0.099 -0.108 0.125 0.862 -13.619 1.852 3 A_A2:U70_A A 2 ? A 70 ? 20 1 1 A G 4 1_555 A U 70 1_555 -2.149 -0.502 0.175 2.131 -13.500 -4.471 4 A_G3:U69_A A 3 ? A 69 ? 28 1 1 A C 5 1_555 A G 69 1_555 0.434 -0.193 0.179 4.743 -13.702 -1.091 5 A_C4:G68_A A 4 ? A 68 ? 19 1 1 A G 6 1_555 A C 68 1_555 -0.263 0.043 0.177 -6.299 -17.770 -0.531 6 A_G5:C67_A A 5 ? A 67 ? 19 1 1 A G 7 1_555 A C 67 1_555 -0.058 -0.146 0.105 -5.339 -11.169 -0.443 7 A_G6:C66_A A 6 ? A 66 ? 19 1 1 A G 50 1_555 A U 66 1_555 -2.273 -0.540 -0.130 -3.885 -14.244 -3.889 8 A_G49:U65_A A 49 ? A 65 ? 28 1 1 A C 51 1_555 A G 65 1_555 0.194 -0.039 0.367 -1.349 -14.407 0.880 9 A_C50:G64_A A 50 ? A 64 ? 19 1 1 A G 52 1_555 A C 64 1_555 -0.138 -0.031 -0.068 -5.848 -6.039 -0.857 10 A_G51:C63_A A 51 ? A 63 ? 19 1 1 A G 53 1_555 A C 63 1_555 -0.200 -0.033 0.007 -2.707 -9.286 1.987 11 A_G52:C62_A A 52 ? A 62 ? 19 1 1 A G 54 1_555 A C 62 1_555 -0.373 -0.064 -0.147 -14.779 -7.660 -0.327 12 A_G53:C61_A A 53 ? A 61 ? 19 1 1 A U 55 1_555 A A 59 1_555 4.120 -1.857 0.671 -3.948 21.935 -100.990 13 A_U54:A58_A A 54 ? A 58 ? 24 4 1 A U 56 1_555 A G 18 1_555 0.544 -5.380 0.093 25.094 12.170 -94.942 14 A_U55:G17_A A 55 ? A 17 ? ? 2 1 A C 37 1_555 A U 34 1_555 -6.648 -5.227 0.759 -17.754 12.003 -52.104 15 A_C36:U33_A A 36 ? A 33 ? ? 4 1 A C 39 1_555 A C 33 1_555 -5.902 -2.109 0.621 3.955 -4.301 -17.586 16 A_C38:C32_A A 38 ? A 32 ? ? ? 1 A G 40 1_555 A C 32 1_555 -0.082 -0.100 0.236 3.520 -15.081 -2.844 17 A_G39:C31_A A 39 ? A 31 ? 19 1 1 A C 41 1_555 A G 31 1_555 0.314 -0.221 0.132 1.688 -16.687 0.303 18 A_C40:G30_A A 40 ? A 30 ? 19 1 1 A A 42 1_555 A U 30 1_555 0.021 -0.110 0.126 -1.766 -7.960 -1.680 19 A_A41:U29_A A 41 ? A 29 ? 20 1 1 A G 43 1_555 A C 29 1_555 -0.140 0.002 -0.063 -6.801 -18.814 -1.763 20 A_G42:C28_A A 42 ? A 28 ? 19 1 1 A G 44 1_555 A C 28 1_555 -0.298 0.026 0.101 -18.747 -21.953 0.773 21 A_G43:C27_A A 43 ? A 27 ? 19 1 1 A G 45 1_555 A A 27 1_555 -0.029 1.673 -0.019 -28.684 -17.364 -19.084 22 A_G44:A26_A A 44 ? A 26 ? 8 1 1 A G 10 1_555 A U 26 1_555 -2.406 -0.470 -0.164 -7.704 -12.071 1.731 23 A_G9:U25_A A 9 ? A 25 ? 28 1 1 A U 11 1_555 A A 25 1_555 -0.036 -0.069 0.305 -13.914 -18.926 3.603 24 A_U10:A24_A A 10 ? A 24 ? 20 1 1 A U 12 1_555 A A 24 1_555 0.117 -0.028 0.234 -8.639 -9.503 -2.897 25 A_U11:A23_A A 11 ? A 23 ? 20 1 1 A C 13 1_555 A G 23 1_555 0.266 -0.054 0.132 5.682 -9.243 0.579 26 A_C12:G22_A A 12 ? A 22 ? 19 1 1 A A 14 1_555 A U 8 1_555 -4.023 -1.780 0.915 3.010 18.017 -97.906 27 A_A13:U7_A A 13 ? A 7 ? 24 4 1 A G 15 1_555 A C 49 1_555 0.057 3.515 0.373 -0.361 5.429 154.900 28 A_G14:C48_A A 14 ? A 48 ? 22 2 1 A G 19 1_555 A C 57 1_555 -0.137 -0.103 0.135 -21.206 -12.496 -2.720 29 A_G18:C56_A A 18 ? A 56 ? 19 1 1 B G 1 1_555 B C 73 1_555 -0.464 -0.062 -0.011 -7.137 -7.144 -1.392 30 B_G0:C72_B B 0 ? B 72 ? 19 1 1 B G 2 1_555 B C 72 1_555 -0.477 -0.047 -0.185 -7.594 -11.562 -3.768 31 B_G1:C71_B B 1 ? B 71 ? 19 1 1 B A 3 1_555 B U 71 1_555 -0.112 -0.073 0.130 1.321 -13.301 3.756 32 B_A2:U70_B B 2 ? B 70 ? 20 1 1 B G 4 1_555 B U 70 1_555 -2.174 -0.454 0.184 2.644 -14.093 -1.526 33 B_G3:U69_B B 3 ? B 69 ? 28 1 1 B C 5 1_555 B G 69 1_555 0.457 -0.156 0.180 4.627 -14.752 1.283 34 B_C4:G68_B B 4 ? B 68 ? 19 1 1 B G 6 1_555 B C 68 1_555 -0.276 0.081 0.134 -7.936 -19.322 1.436 35 B_G5:C67_B B 5 ? B 67 ? 19 1 1 B G 7 1_555 B C 67 1_555 -0.069 -0.088 0.082 -7.533 -10.726 0.985 36 B_G6:C66_B B 6 ? B 66 ? 19 1 1 B G 50 1_555 B U 66 1_555 -2.260 -0.503 -0.166 -4.928 -13.567 -3.221 37 B_G49:U65_B B 49 ? B 65 ? 28 1 1 B C 51 1_555 B G 65 1_555 0.208 -0.018 0.342 -1.467 -13.547 1.215 38 B_C50:G64_B B 50 ? B 64 ? 19 1 1 B G 52 1_555 B C 64 1_555 -0.117 -0.023 -0.054 -5.436 -6.022 -0.962 39 B_G51:C63_B B 51 ? B 63 ? 19 1 1 B G 53 1_555 B C 63 1_555 -0.187 -0.039 0.016 -2.386 -10.086 1.740 40 B_G52:C62_B B 52 ? B 62 ? 19 1 1 B G 54 1_555 B C 62 1_555 -0.402 -0.081 -0.029 -13.652 -9.422 -0.696 41 B_G53:C61_B B 53 ? B 61 ? 19 1 1 B U 55 1_555 B A 59 1_555 4.109 -1.832 0.761 -5.102 20.502 -100.732 42 B_U54:A58_B B 54 ? B 58 ? 24 4 1 B U 56 1_555 B G 18 1_555 0.591 -5.350 0.204 23.701 11.505 -94.422 43 B_U55:G17_B B 55 ? B 17 ? ? 2 1 B C 39 1_555 B C 33 1_555 -5.872 -2.134 0.620 4.497 -5.141 -16.438 44 B_C38:C32_B B 38 ? B 32 ? ? ? 1 B G 40 1_555 B C 32 1_555 -0.081 -0.103 0.237 3.090 -15.334 -2.438 45 B_G39:C31_B B 39 ? B 31 ? 19 1 1 B C 41 1_555 B G 31 1_555 0.321 -0.218 0.136 1.312 -16.658 0.762 46 B_C40:G30_B B 40 ? B 30 ? 19 1 1 B A 42 1_555 B U 30 1_555 0.019 -0.113 0.113 -2.248 -8.017 -1.361 47 B_A41:U29_B B 41 ? B 29 ? 20 1 1 B G 43 1_555 B C 29 1_555 -0.145 0.009 -0.083 -7.319 -18.258 -1.620 48 B_G42:C28_B B 42 ? B 28 ? 19 1 1 B G 44 1_555 B C 28 1_555 -0.305 0.041 0.092 -18.457 -20.965 1.027 49 B_G43:C27_B B 43 ? B 27 ? 19 1 1 B G 45 1_555 B A 27 1_555 -0.039 1.665 -0.038 -28.131 -17.123 -18.924 50 B_G44:A26_B B 44 ? B 26 ? 8 1 1 B G 10 1_555 B U 26 1_555 -2.403 -0.479 -0.165 -8.208 -12.114 1.489 51 B_G9:U25_B B 9 ? B 25 ? 28 1 1 B U 11 1_555 B A 25 1_555 -0.026 -0.070 0.302 -14.111 -18.665 3.129 52 B_U10:A24_B B 10 ? B 24 ? 20 1 1 B U 12 1_555 B A 24 1_555 0.131 -0.024 0.226 -8.323 -9.011 -3.110 53 B_U11:A23_B B 11 ? B 23 ? 20 1 1 B C 13 1_555 B G 23 1_555 0.244 -0.057 0.112 6.241 -9.520 -0.270 54 B_C12:G22_B B 12 ? B 22 ? 19 1 1 B A 14 1_555 B U 8 1_555 -4.015 -1.782 0.950 2.707 18.346 -98.112 55 B_A13:U7_B B 13 ? B 7 ? 24 4 1 B G 15 1_555 B C 49 1_555 0.058 3.541 0.435 -0.160 6.698 154.335 56 B_G14:C48_B B 14 ? B 48 ? 22 2 1 B G 19 1_555 B C 57 1_555 -0.158 -0.105 0.148 -21.703 -13.457 -2.919 57 B_G18:C56_B B 18 ? B 56 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 73 1_555 A G 2 1_555 A C 72 1_555 -0.952 -1.724 3.254 -0.547 6.423 33.812 -3.865 1.528 2.902 10.920 0.930 34.403 1 AA_G0G1:C71C72_AA A 0 ? A 72 ? A 1 ? A 71 ? 1 A G 2 1_555 A C 72 1_555 A A 3 1_555 A U 71 1_555 0.395 -1.101 3.068 -2.320 5.426 31.896 -2.838 -1.077 2.812 9.770 4.177 32.423 2 AA_G1A2:U70C71_AA A 1 ? A 71 ? A 2 ? A 70 ? 1 A A 3 1_555 A U 71 1_555 A G 4 1_555 A U 70 1_555 0.066 -1.698 2.985 -2.710 10.091 26.366 -5.381 -0.649 2.182 21.099 5.666 28.327 3 AA_A2G3:U69U70_AA A 2 ? A 70 ? A 3 ? A 69 ? 1 A G 4 1_555 A U 70 1_555 A C 5 1_555 A G 69 1_555 0.208 -1.396 3.248 -0.257 1.861 42.176 -2.127 -0.315 3.185 2.585 0.356 42.216 4 AA_G3C4:G68U69_AA A 3 ? A 69 ? A 4 ? A 68 ? 1 A C 5 1_555 A G 69 1_555 A G 6 1_555 A C 68 1_555 0.152 -2.080 3.270 1.400 10.916 29.049 -5.759 -0.045 2.357 20.842 -2.673 31.021 5 AA_C4G5:C67G68_AA A 4 ? A 68 ? A 5 ? A 67 ? 1 A G 6 1_555 A C 68 1_555 A G 7 1_555 A C 67 1_555 -0.119 -1.666 3.186 -0.502 11.320 32.312 -4.429 0.131 2.481 19.603 0.869 34.191 6 AA_G5G6:C66C67_AA A 5 ? A 67 ? A 6 ? A 66 ? 1 A G 7 1_555 A C 67 1_555 A G 50 1_555 A U 66 1_555 -0.297 -1.804 2.988 -2.520 8.986 28.024 -5.139 0.136 2.327 17.938 5.031 29.508 7 AA_G6G49:U65C66_AA A 6 ? A 66 ? A 49 ? A 65 ? 1 A G 50 1_555 A U 66 1_555 A C 51 1_555 A G 65 1_555 -0.200 -1.338 3.214 -4.350 -1.177 44.778 -1.644 -0.126 3.251 -1.541 5.693 44.992 8 AA_G49C50:G64U65_AA A 49 ? A 65 ? A 50 ? A 64 ? 1 A C 51 1_555 A G 65 1_555 A G 52 1_555 A C 64 1_555 -0.208 -1.976 3.234 2.382 10.798 29.239 -5.483 0.786 2.350 20.490 -4.520 31.217 9 AA_C50G51:C63G64_AA A 50 ? A 64 ? A 51 ? A 63 ? 1 A G 52 1_555 A C 64 1_555 A G 53 1_555 A C 63 1_555 0.565 -1.922 3.146 0.515 4.673 28.741 -4.761 -1.021 2.814 9.336 -1.029 29.115 10 AA_G51G52:C62C63_AA A 51 ? A 63 ? A 52 ? A 62 ? 1 A G 53 1_555 A C 63 1_555 A G 54 1_555 A C 62 1_555 0.482 -2.189 3.549 2.298 3.789 33.242 -4.450 -0.438 3.311 6.586 -3.996 33.528 11 AA_G52G53:C61C62_AA A 52 ? A 62 ? A 53 ? A 61 ? 1 A G 54 1_555 A C 62 1_555 A U 55 1_555 A A 59 1_555 -2.340 -2.234 3.205 3.102 -1.022 85.270 -1.626 1.795 3.157 -0.754 -2.289 85.321 12 AA_G53U54:A58C61_AA A 53 ? A 61 ? A 54 ? A 58 ? 1 A U 55 1_555 A A 59 1_555 A U 56 1_555 A G 18 1_555 1.932 -1.817 3.313 8.662 2.285 39.693 -2.885 -1.762 3.535 3.314 -12.563 40.651 13 AA_U54U55:G17A58_AA A 54 ? A 58 ? A 55 ? A 17 ? 1 A C 37 1_555 A U 34 1_555 A C 39 1_555 A C 33 1_555 0.388 -2.690 5.322 2.652 23.614 54.047 -4.572 -0.191 3.951 24.691 -2.773 58.678 14 AA_C36C38:C32U33_AA A 36 ? A 33 ? A 38 ? A 32 ? 1 A C 39 1_555 A C 33 1_555 A G 40 1_555 A C 32 1_555 0.785 -1.226 3.507 -4.575 11.292 56.613 -1.892 -1.065 3.164 11.756 4.763 57.803 15 AA_C38G39:C31C32_AA A 38 ? A 32 ? A 39 ? A 31 ? 1 A G 40 1_555 A C 32 1_555 A C 41 1_555 A G 31 1_555 0.088 -1.668 3.258 0.221 4.323 36.925 -3.174 -0.110 3.051 6.797 -0.347 37.169 16 AA_G39C40:G30C31_AA A 39 ? A 31 ? A 40 ? A 30 ? 1 A C 41 1_555 A G 31 1_555 A A 42 1_555 A U 30 1_555 0.012 -1.775 3.279 -0.454 6.231 29.592 -4.602 -0.110 2.854 12.031 0.876 30.230 17 AA_C40A41:U29G30_AA A 40 ? A 30 ? A 41 ? A 29 ? 1 A A 42 1_555 A U 30 1_555 A G 43 1_555 A C 29 1_555 0.131 -1.642 3.433 2.843 5.184 30.783 -4.028 0.300 3.121 9.655 -5.294 31.332 18 AA_A41G42:C28U29_AA A 41 ? A 29 ? A 42 ? A 28 ? 1 A G 43 1_555 A C 29 1_555 A G 44 1_555 A C 28 1_555 0.460 -1.571 3.504 -1.244 6.864 35.818 -3.486 -0.912 3.142 11.031 1.999 36.470 19 AA_G42G43:C27C28_AA A 42 ? A 28 ? A 43 ? A 27 ? 1 A G 44 1_555 A C 28 1_555 A G 45 1_555 A A 27 1_555 -1.316 -1.993 3.242 3.560 6.785 35.124 -4.120 2.600 2.681 11.080 -5.814 35.924 20 AA_G43G44:A26C27_AA A 43 ? A 27 ? A 44 ? A 26 ? 1 A G 45 1_555 A A 27 1_555 A G 10 1_555 A U 26 1_555 -1.874 -3.708 2.784 13.531 14.106 48.869 -4.789 2.688 1.217 16.314 -15.650 52.410 21 AA_G44G9:U25A26_AA A 44 ? A 26 ? A 9 ? A 25 ? 1 A G 10 1_555 A U 26 1_555 A U 11 1_555 A A 25 1_555 -0.534 -1.105 3.388 -5.256 7.879 44.983 -2.110 0.221 3.201 10.164 6.781 45.919 22 AA_G9U10:A24U25_AA A 9 ? A 25 ? A 10 ? A 24 ? 1 A U 11 1_555 A A 25 1_555 A U 12 1_555 A A 24 1_555 -0.512 -1.097 3.058 0.546 6.791 34.730 -2.709 0.916 2.792 11.242 -0.904 35.372 23 AA_U10U11:A23A24_AA A 10 ? A 24 ? A 11 ? A 23 ? 1 A U 12 1_555 A A 24 1_555 A C 13 1_555 A G 23 1_555 1.433 -1.749 2.921 3.542 3.741 26.724 -4.549 -2.260 2.817 7.999 -7.573 27.207 24 AA_U11C12:G22A23_AA A 11 ? A 23 ? A 12 ? A 22 ? 1 A C 13 1_555 A G 23 1_555 A A 14 1_555 A U 8 1_555 -1.545 -0.384 3.419 0.315 -9.153 60.883 0.078 1.526 3.432 -8.978 -0.309 61.503 25 AA_C12A13:U7G22_AA A 12 ? A 22 ? A 13 ? A 7 ? 1 A A 14 1_555 A U 8 1_555 A G 15 1_555 A C 49 1_555 2.258 -3.330 3.212 -4.919 7.799 -65.418 2.724 1.863 3.686 -7.179 -4.528 -65.993 26 AA_A13G14:C48U7_AA A 13 ? A 7 ? A 14 ? A 48 ? 1 B G 1 1_555 B C 73 1_555 B G 2 1_555 B C 72 1_555 -0.931 -1.739 3.250 -0.530 6.653 33.232 -3.996 1.516 2.872 11.489 0.916 33.877 27 BB_G0G1:C71C72_BB B 0 ? B 72 ? B 1 ? B 71 ? 1 B G 2 1_555 B C 72 1_555 B A 3 1_555 B U 71 1_555 0.418 -1.131 3.054 -2.521 5.850 30.943 -3.053 -1.188 2.757 10.822 4.663 31.577 28 BB_G1A2:U70C71_BB B 1 ? B 71 ? B 2 ? B 70 ? 1 B A 3 1_555 B U 71 1_555 B G 4 1_555 B U 70 1_555 0.096 -1.769 2.961 -3.156 11.406 25.193 -5.851 -0.800 1.964 24.500 6.779 27.794 29 BB_A2G3:U69U70_BB B 2 ? B 70 ? B 3 ? B 69 ? 1 B G 4 1_555 B U 70 1_555 B C 5 1_555 B G 69 1_555 0.171 -1.383 3.252 -0.410 2.717 41.616 -2.223 -0.282 3.158 3.819 0.576 41.703 30 BB_G3C4:G68U69_BB B 3 ? B 69 ? B 4 ? B 68 ? 1 B C 5 1_555 B G 69 1_555 B G 6 1_555 B C 68 1_555 0.127 -2.093 3.277 2.064 13.350 27.963 -6.141 0.107 2.088 25.807 -3.990 30.996 31 BB_C4G5:C67G68_BB B 4 ? B 68 ? B 5 ? B 67 ? 1 B G 6 1_555 B C 68 1_555 B G 7 1_555 B C 67 1_555 -0.097 -1.691 3.185 -0.216 12.619 31.641 -4.665 0.136 2.359 22.075 0.378 34.005 32 BB_G5G6:C66C67_BB B 5 ? B 67 ? B 6 ? B 66 ? 1 B G 7 1_555 B C 67 1_555 B G 50 1_555 B U 66 1_555 -0.280 -1.893 2.989 -1.386 8.879 26.694 -5.611 0.308 2.266 18.575 2.899 28.141 33 BB_G6G49:U65C66_BB B 6 ? B 66 ? B 49 ? B 65 ? 1 B G 50 1_555 B U 66 1_555 B C 51 1_555 B G 65 1_555 -0.228 -1.370 3.201 -4.210 -1.304 43.820 -1.706 -0.088 3.245 -1.741 5.624 44.030 34 BB_G49C50:G64U65_BB B 49 ? B 65 ? B 50 ? B 64 ? 1 B C 51 1_555 B G 65 1_555 B G 52 1_555 B C 64 1_555 -0.274 -1.991 3.233 2.003 10.370 28.738 -5.589 0.870 2.364 20.057 -3.875 30.580 35 BB_C50G51:C63G64_BB B 50 ? B 64 ? B 51 ? B 63 ? 1 B G 52 1_555 B C 64 1_555 B G 53 1_555 B C 63 1_555 0.534 -1.912 3.141 0.522 4.854 28.846 -4.748 -0.954 2.797 9.656 -1.039 29.247 36 BB_G51G52:C62C63_BB B 51 ? B 63 ? B 52 ? B 62 ? 1 B G 53 1_555 B C 63 1_555 B G 54 1_555 B C 62 1_555 0.467 -2.176 3.481 1.344 4.118 33.838 -4.382 -0.577 3.217 7.039 -2.298 34.106 37 BB_G52G53:C61C62_BB B 52 ? B 62 ? B 53 ? B 61 ? 1 B G 54 1_555 B C 62 1_555 B U 55 1_555 B A 59 1_555 -2.306 -2.207 3.228 2.648 -0.458 86.512 -1.600 1.739 3.180 -0.334 -1.932 86.546 38 BB_G53U54:A58C61_BB B 53 ? B 61 ? B 54 ? B 58 ? 1 B U 55 1_555 B A 59 1_555 B U 56 1_555 B G 18 1_555 2.062 -1.835 3.282 9.413 2.455 40.742 -2.841 -1.845 3.541 3.467 -13.292 41.839 39 BB_U54U55:G17A58_BB B 54 ? B 58 ? B 55 ? B 17 ? 1 B C 39 1_555 B C 33 1_555 B G 40 1_555 B C 32 1_555 0.754 -1.212 3.534 -4.695 11.663 56.727 -1.895 -1.037 3.184 12.110 4.875 57.990 40 BB_C38G39:C31C32_BB B 38 ? B 32 ? B 39 ? B 31 ? 1 B G 40 1_555 B C 32 1_555 B C 41 1_555 B G 31 1_555 0.085 -1.671 3.254 0.287 4.622 36.729 -3.232 -0.097 3.029 7.300 -0.454 37.010 41 BB_G39C40:G30C31_BB B 39 ? B 31 ? B 40 ? B 30 ? 1 B C 41 1_555 B G 31 1_555 B A 42 1_555 B U 30 1_555 0.015 -1.762 3.278 -0.197 6.651 29.453 -4.662 -0.067 2.821 12.876 0.381 30.179 42 BB_C40A41:U29G30_BB B 40 ? B 30 ? B 41 ? B 29 ? 1 B A 42 1_555 B U 30 1_555 B G 43 1_555 B C 29 1_555 0.149 -1.645 3.439 3.081 5.235 30.594 -4.070 0.316 3.121 9.799 -5.768 31.177 43 BB_A41G42:C28U29_BB B 41 ? B 29 ? B 42 ? B 28 ? 1 B G 43 1_555 B C 29 1_555 B G 44 1_555 B C 28 1_555 0.490 -1.593 3.498 -1.122 6.383 35.250 -3.530 -0.962 3.154 10.431 1.834 35.822 44 BB_G42G43:C27C28_BB B 42 ? B 28 ? B 43 ? B 27 ? 1 B G 44 1_555 B C 28 1_555 B G 45 1_555 B A 27 1_555 -1.326 -2.003 3.254 3.735 6.197 34.888 -4.106 2.669 2.717 10.200 -6.148 35.607 45 BB_G43G44:A26C27_BB B 43 ? B 27 ? B 44 ? B 26 ? 1 B G 45 1_555 B A 27 1_555 B G 10 1_555 B U 26 1_555 -1.917 -3.693 2.829 13.251 13.190 48.868 -4.783 2.763 1.329 15.310 -15.381 52.117 46 BB_G44G9:U25A26_BB B 44 ? B 26 ? B 9 ? B 25 ? 1 B G 10 1_555 B U 26 1_555 B U 11 1_555 B A 25 1_555 -0.560 -1.123 3.382 -5.241 7.889 44.871 -2.139 0.256 3.194 10.200 6.777 45.809 47 BB_G9U10:A24U25_BB B 9 ? B 25 ? B 10 ? B 24 ? 1 B U 11 1_555 B A 25 1_555 B U 12 1_555 B A 24 1_555 -0.522 -1.087 3.049 0.617 7.041 34.457 -2.744 0.948 2.771 11.734 -1.027 35.153 48 BB_U10U11:A23A24_BB B 10 ? B 24 ? B 11 ? B 23 ? 1 B U 12 1_555 B A 24 1_555 B C 13 1_555 B G 23 1_555 1.412 -1.743 2.913 3.578 3.880 26.128 -4.675 -2.240 2.794 8.473 -7.813 26.647 49 BB_U11C12:G22A23_BB B 11 ? B 23 ? B 12 ? B 22 ? 1 B C 13 1_555 B G 23 1_555 B A 14 1_555 B U 8 1_555 -1.573 -0.340 3.429 0.202 -9.602 60.700 0.145 1.551 3.438 -9.437 -0.198 61.383 50 BB_C12A13:U7G22_BB B 12 ? B 22 ? B 13 ? B 7 ? 1 B A 14 1_555 B U 8 1_555 B G 15 1_555 B C 49 1_555 2.222 -3.322 3.143 -4.804 7.734 -65.593 2.722 1.835 3.607 -7.104 -4.412 -66.152 51 BB_A13G14:C48U7_BB B 13 ? B 7 ? B 14 ? B 48 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)' 'United States' 'R01 GM058443' 1 'National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)' 'United States' 'R35 GM118108' 2 'National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)' 'United States' 'T32 GM008152' 3 'National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)' 'United States' 'T32 GM008382' 4 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1EHZ _pdbx_initial_refinement_model.details 'PDB entry 1EHZ' # loop_ _pdbx_reflns_twin.domain_id _pdbx_reflns_twin.crystal_id _pdbx_reflns_twin.diffrn_id _pdbx_reflns_twin.fraction _pdbx_reflns_twin.operator _pdbx_reflns_twin.type _pdbx_reflns_twin.mean_F_square_over_mean_F2 _pdbx_reflns_twin.mean_I2_over_mean_I_square 1 1 1 0.524 'H, K, L' ? ? ? 2 1 1 0.476 '-K, -H, -L' ? ? ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #