HEADER IMMUNE SYSTEM 26-SEP-19 6UGW TITLE CRYSTAL STRUCTURE OF THE FC FRAGMENT OF PF06438179/GP1111 AN TITLE 2 INFLIXIMAB BIOSIMILAR IN A C-CENTERED ORTHORHOMBIC CRYSTAL FORM, LOT TITLE 3 A COMPND MOL_ID: 1; COMPND 2 MOLECULE: PF-06438179/GP1111 FC; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LOTA_FC; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: MOUSE; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10090 KEYWDS ANTIBODY, BIOLOGIC, BIOSIMILAR, INFLIXIMAB, FRAGMENT CRYSTALLIZABLE, KEYWDS 2 IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.J.MAYCLIN,T.E.EDWARDS REVDAT 4 11-OCT-23 6UGW 1 HETSYN LINK REVDAT 3 29-JUL-20 6UGW 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 12-FEB-20 6UGW 1 JRNL REVDAT 1 13-NOV-19 6UGW 0 JRNL AUTH T.F.LERCH,P.SHARPE,S.J.MAYCLIN,T.E.EDWARDS,S.POLLECK, JRNL AUTH 2 J.C.ROUSE,Q.ZOU,H.D.CONLON JRNL TITL CRYSTAL STRUCTURES OF PF-06438179/GP1111, AN INFLIXIMAB JRNL TITL 2 BIOSIMILAR. JRNL REF BIODRUGS V. 34 77 2020 JRNL REFN ISSN 1179-190X JRNL PMID 31650490 JRNL DOI 10.1007/S40259-019-00390-1 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 19450 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 972 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.0000 - 3.8244 0.99 2765 145 0.1586 0.1938 REMARK 3 2 3.8244 - 3.0361 1.00 2651 140 0.1826 0.2140 REMARK 3 3 3.0361 - 2.6524 1.00 2635 139 0.1942 0.2289 REMARK 3 4 2.6524 - 2.4100 1.00 2621 137 0.1930 0.2317 REMARK 3 5 2.4100 - 2.2373 1.00 2619 137 0.1939 0.2352 REMARK 3 6 2.2373 - 2.1054 1.00 2597 137 0.1965 0.2389 REMARK 3 7 2.1054 - 2.0000 1.00 2590 137 0.2110 0.2802 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1771 REMARK 3 ANGLE : 0.891 2431 REMARK 3 CHIRALITY : 0.054 294 REMARK 3 PLANARITY : 0.005 299 REMARK 3 DIHEDRAL : 15.163 1069 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 267 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5205 17.2204 -5.4923 REMARK 3 T TENSOR REMARK 3 T11: 0.3314 T22: 0.4151 REMARK 3 T33: 0.4484 T12: -0.0100 REMARK 3 T13: -0.0700 T23: -0.2277 REMARK 3 L TENSOR REMARK 3 L11: 0.2469 L22: 4.8424 REMARK 3 L33: 1.3479 L12: 0.9649 REMARK 3 L13: 0.0994 L23: -0.3764 REMARK 3 S TENSOR REMARK 3 S11: 0.1455 S12: -0.7251 S13: 0.5836 REMARK 3 S21: 0.7097 S22: -0.1529 S23: -0.2441 REMARK 3 S31: -0.2504 S32: 0.0925 S33: 0.0016 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 268 THROUGH 304 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5314 32.0399 -2.4616 REMARK 3 T TENSOR REMARK 3 T11: 0.5449 T22: 0.2257 REMARK 3 T33: 0.9853 T12: -0.0943 REMARK 3 T13: -0.1143 T23: -0.6944 REMARK 3 L TENSOR REMARK 3 L11: 0.6452 L22: 0.5259 REMARK 3 L33: 0.3007 L12: 0.5949 REMARK 3 L13: 0.4418 L23: 0.3974 REMARK 3 S TENSOR REMARK 3 S11: 0.1094 S12: -0.3011 S13: 0.7715 REMARK 3 S21: 0.2806 S22: 0.1490 S23: -0.2590 REMARK 3 S31: -0.5484 S32: 0.0483 S33: 0.6230 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 305 THROUGH 317 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5756 15.8775 -4.6525 REMARK 3 T TENSOR REMARK 3 T11: 0.2871 T22: 0.3443 REMARK 3 T33: 0.3420 T12: 0.0154 REMARK 3 T13: -0.0292 T23: -0.2054 REMARK 3 L TENSOR REMARK 3 L11: 1.6184 L22: 0.5182 REMARK 3 L33: 1.9737 L12: 0.8453 REMARK 3 L13: 0.4173 L23: 0.5692 REMARK 3 S TENSOR REMARK 3 S11: 0.0807 S12: -0.5642 S13: 0.8605 REMARK 3 S21: 0.3975 S22: -0.0576 S23: -0.0135 REMARK 3 S31: -0.1520 S32: -0.1026 S33: 0.1992 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 318 THROUGH 339 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1949 28.6211 -11.5912 REMARK 3 T TENSOR REMARK 3 T11: 0.4952 T22: 0.2643 REMARK 3 T33: 0.8614 T12: 0.0255 REMARK 3 T13: -0.0339 T23: -0.1364 REMARK 3 L TENSOR REMARK 3 L11: 0.5244 L22: 4.6474 REMARK 3 L33: 1.7266 L12: 1.5076 REMARK 3 L13: 0.0334 L23: 0.7863 REMARK 3 S TENSOR REMARK 3 S11: -0.0060 S12: -0.0883 S13: 1.2817 REMARK 3 S21: -0.2340 S22: 0.1188 S23: 0.1079 REMARK 3 S31: -0.8031 S32: -0.0872 S33: 0.1495 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 340 THROUGH 375 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1925 -6.2366 -16.5769 REMARK 3 T TENSOR REMARK 3 T11: 0.1841 T22: 0.2074 REMARK 3 T33: 0.3008 T12: -0.0012 REMARK 3 T13: 0.0008 T23: 0.0604 REMARK 3 L TENSOR REMARK 3 L11: 6.5581 L22: 2.9476 REMARK 3 L33: 1.2460 L12: -2.5331 REMARK 3 L13: 0.8255 L23: -0.4828 REMARK 3 S TENSOR REMARK 3 S11: 0.1727 S12: -0.0096 S13: -0.8227 REMARK 3 S21: -0.1571 S22: -0.2215 S23: -0.2584 REMARK 3 S31: 0.2085 S32: 0.1083 S33: -0.0168 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 376 THROUGH 421 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.6275 -4.0111 -11.2895 REMARK 3 T TENSOR REMARK 3 T11: 0.2028 T22: 0.4509 REMARK 3 T33: 0.2206 T12: 0.0205 REMARK 3 T13: -0.0136 T23: 0.1667 REMARK 3 L TENSOR REMARK 3 L11: 1.4869 L22: 1.7375 REMARK 3 L33: 2.6613 L12: 0.3277 REMARK 3 L13: -0.3432 L23: 0.0953 REMARK 3 S TENSOR REMARK 3 S11: -0.0381 S12: -0.7159 S13: -0.8285 REMARK 3 S21: 0.1946 S22: -0.0158 S23: -0.0688 REMARK 3 S31: 0.0375 S32: 0.0930 S33: -0.0149 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 422 THROUGH 446 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.8393 -8.5087 -8.1238 REMARK 3 T TENSOR REMARK 3 T11: 0.3156 T22: 0.4148 REMARK 3 T33: 0.3952 T12: 0.0272 REMARK 3 T13: 0.0071 T23: 0.2571 REMARK 3 L TENSOR REMARK 3 L11: 3.3058 L22: 1.1128 REMARK 3 L33: 1.0918 L12: -1.1801 REMARK 3 L13: 0.9491 L23: -0.5912 REMARK 3 S TENSOR REMARK 3 S11: -0.2051 S12: -0.8510 S13: -1.0090 REMARK 3 S21: 0.1315 S22: -0.2951 S23: -0.3449 REMARK 3 S31: 0.1426 S32: 0.2943 S33: -0.0720 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UGW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1000244505. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19460 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.103 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.18 REMARK 200 R MERGE FOR SHELL (I) : 0.49700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.690 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4CDH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML PROTEIN WITH JCSG+ E7 REMARK 280 (266849E7): 10% 2-PROPANOL, 200 MM ZINC ACETATE, 100 MM SODIUM REMARK 280 CACODYLATE, PH 6.5, CRYOPROTECTANT: 20% ETHYLENE GLYCOL, PUCKID REMARK 280 KUX1-2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.89500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.89500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 25.04500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 74.04500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 25.04500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 74.04500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.89500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 25.04500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 74.04500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 37.89500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 25.04500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 74.04500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 50.09000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -37.89500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN A 503 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 745 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 196 REMARK 465 LYS A 197 REMARK 465 LYS A 198 REMARK 465 THR A 199 REMARK 465 ALA A 200 REMARK 465 ILE A 201 REMARK 465 ALA A 202 REMARK 465 ILE A 203 REMARK 465 ALA A 204 REMARK 465 VAL A 205 REMARK 465 ALA A 206 REMARK 465 LEU A 207 REMARK 465 ALA A 208 REMARK 465 GLY A 209 REMARK 465 PHE A 210 REMARK 465 ALA A 211 REMARK 465 THR A 212 REMARK 465 VAL A 213 REMARK 465 ALA A 214 REMARK 465 GLN A 215 REMARK 465 ALA A 216 REMARK 465 ASP A 217 REMARK 465 VAL A 218 REMARK 465 GLU A 219 REMARK 465 SER A 220 REMARK 465 LYS A 221 REMARK 465 SER A 222 REMARK 465 CYS A 223 REMARK 465 ASP A 224 REMARK 465 LYS A 225 REMARK 465 THR A 226 REMARK 465 HIS A 227 REMARK 465 THR A 228 REMARK 465 CYS A 229 REMARK 465 PRO A 230 REMARK 465 PRO A 231 REMARK 465 CYS A 232 REMARK 465 PRO A 233 REMARK 465 ALA A 234 REMARK 465 PRO A 235 REMARK 465 GLU A 236 REMARK 465 LEU A 237 REMARK 465 LEU A 238 REMARK 465 GLY A 239 REMARK 465 SER A 447 REMARK 465 PRO A 448 REMARK 465 GLY A 449 REMARK 465 LYS A 450 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 GLU A 272 CG CD OE1 OE2 REMARK 470 GLU A 275 CG CD OE1 OE2 REMARK 470 LYS A 291 CG CD CE NZ REMARK 470 LYS A 293 CG CD CE NZ REMARK 470 ARG A 295 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 329 CG CD CE NZ REMARK 470 ARG A 358 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 363 CG CD CE NZ REMARK 470 ASN A 364 CG OD1 ND2 REMARK 470 LYS A 417 CG CD CE NZ REMARK 470 GLN A 422 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 BMA B 3 O5 MAN B 7 1.47 REMARK 500 O6 NAG B 1 O5 FUC B 8 1.85 REMARK 500 O HOH A 641 O HOH A 734 2.06 REMARK 500 ND1 HIS A 436 O HOH A 601 2.11 REMARK 500 O3 GAL B 6 O HOH A 602 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 622 O HOH A 622 4555 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 751 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A 752 DISTANCE = 7.31 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 313 NE2 REMARK 620 2 HIS A 438 NE2 110.8 REMARK 620 3 ACT A 504 O 119.4 88.6 REMARK 620 4 ACT A 504 OXT 101.1 142.7 58.2 REMARK 620 5 HOH A 641 O 115.2 103.9 114.2 78.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 321 OE1 REMARK 620 2 GLU A 321 OE2 55.3 REMARK 620 3 GLU A 321 OE1 0.0 55.3 REMARK 620 4 GLU A 321 OE2 55.3 0.0 55.3 REMARK 620 5 HOH A 692 O 133.1 80.2 133.1 80.2 REMARK 620 6 HOH A 692 O 81.7 133.6 81.7 133.6 131.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 649 O REMARK 620 2 HOH A 736 O 144.8 REMARK 620 N 1 DBREF 6UGW A 196 220 PDB 6UGW 6UGW 196 220 DBREF 6UGW A 221 450 UNP P0DOX5 IGG1_HUMAN 220 449 SEQRES 1 A 255 MET LYS LYS THR ALA ILE ALA ILE ALA VAL ALA LEU ALA SEQRES 2 A 255 GLY PHE ALA THR VAL ALA GLN ALA ASP VAL GLU SER LYS SEQRES 3 A 255 SER CYS ASP LYS THR HIS THR CYS PRO PRO CYS PRO ALA SEQRES 4 A 255 PRO GLU LEU LEU GLY GLY PRO SER VAL PHE LEU PHE PRO SEQRES 5 A 255 PRO LYS PRO LYS ASP THR LEU MET ILE SER ARG THR PRO SEQRES 6 A 255 GLU VAL THR CYS VAL VAL VAL ASP VAL SER HIS GLU ASP SEQRES 7 A 255 PRO GLU VAL LYS PHE ASN TRP TYR VAL ASP GLY VAL GLU SEQRES 8 A 255 VAL HIS ASN ALA LYS THR LYS PRO ARG GLU GLU GLN TYR SEQRES 9 A 255 ASN SER THR TYR ARG VAL VAL SER VAL LEU THR VAL LEU SEQRES 10 A 255 HIS GLN ASP TRP LEU ASN GLY LYS GLU TYR LYS CYS LYS SEQRES 11 A 255 VAL SER ASN LYS ALA LEU PRO ALA PRO ILE GLU LYS THR SEQRES 12 A 255 ILE SER LYS ALA LYS GLY GLN PRO ARG GLU PRO GLN VAL SEQRES 13 A 255 TYR THR LEU PRO PRO SER ARG ASP GLU LEU THR LYS ASN SEQRES 14 A 255 GLN VAL SER LEU THR CYS LEU VAL LYS GLY PHE TYR PRO SEQRES 15 A 255 SER ASP ILE ALA VAL GLU TRP GLU SER ASN GLY GLN PRO SEQRES 16 A 255 GLU ASN ASN TYR LYS THR THR PRO PRO VAL LEU ASP SER SEQRES 17 A 255 ASP GLY SER PHE PHE LEU TYR SER LYS LEU THR VAL ASP SEQRES 18 A 255 LYS SER ARG TRP GLN GLN GLY ASN VAL PHE SER CYS SER SEQRES 19 A 255 VAL MET HIS GLU ALA LEU HIS ASN HIS TYR THR GLN LYS SEQRES 20 A 255 SER LEU SER LEU SER PRO GLY LYS HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET MAN B 4 11 HET NAG B 5 14 HET GAL B 6 11 HET MAN B 7 11 HET FUC B 8 10 HET ZN A 501 1 HET ZN A 502 1 HET ZN A 503 1 HET ACT A 504 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM ZN ZINC ION HETNAM ACT ACETATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 2 MAN 2(C6 H12 O6) FORMUL 2 GAL C6 H12 O6 FORMUL 2 FUC C6 H12 O5 FORMUL 3 ZN 3(ZN 2+) FORMUL 6 ACT C2 H3 O2 1- FORMUL 7 HOH *152(H2 O) HELIX 1 AA1 LYS A 249 MET A 255 1 7 HELIX 2 AA2 LEU A 312 ASN A 318 1 7 HELIX 3 AA3 SER A 357 LYS A 363 5 7 HELIX 4 AA4 LYS A 417 GLN A 422 1 6 HELIX 5 AA5 LEU A 435 ASN A 437 5 3 SHEET 1 AA1 4 SER A 242 PHE A 246 0 SHEET 2 AA1 4 GLU A 261 VAL A 269 -1 O VAL A 265 N PHE A 244 SHEET 3 AA1 4 TYR A 303 THR A 310 -1 O TYR A 303 N VAL A 269 SHEET 4 AA1 4 LYS A 291 THR A 292 -1 N LYS A 291 O VAL A 308 SHEET 1 AA2 4 SER A 242 PHE A 246 0 SHEET 2 AA2 4 GLU A 261 VAL A 269 -1 O VAL A 265 N PHE A 244 SHEET 3 AA2 4 TYR A 303 THR A 310 -1 O TYR A 303 N VAL A 269 SHEET 4 AA2 4 GLU A 296 GLU A 297 -1 N GLU A 296 O ARG A 304 SHEET 1 AA3 4 VAL A 285 VAL A 287 0 SHEET 2 AA3 4 LYS A 277 VAL A 282 -1 N VAL A 282 O VAL A 285 SHEET 3 AA3 4 TYR A 322 SER A 327 -1 O LYS A 325 N ASN A 279 SHEET 4 AA3 4 ILE A 335 ILE A 339 -1 O ILE A 335 N VAL A 326 SHEET 1 AA4 4 GLN A 350 LEU A 354 0 SHEET 2 AA4 4 GLN A 365 PHE A 375 -1 O LEU A 371 N TYR A 352 SHEET 3 AA4 4 PHE A 407 ASP A 416 -1 O LEU A 413 N LEU A 368 SHEET 4 AA4 4 TYR A 394 THR A 396 -1 N LYS A 395 O LYS A 412 SHEET 1 AA5 4 GLN A 350 LEU A 354 0 SHEET 2 AA5 4 GLN A 365 PHE A 375 -1 O LEU A 371 N TYR A 352 SHEET 3 AA5 4 PHE A 407 ASP A 416 -1 O LEU A 413 N LEU A 368 SHEET 4 AA5 4 VAL A 400 LEU A 401 -1 N VAL A 400 O PHE A 408 SHEET 1 AA6 4 GLN A 389 GLU A 391 0 SHEET 2 AA6 4 ALA A 381 SER A 386 -1 N SER A 386 O GLN A 389 SHEET 3 AA6 4 PHE A 426 MET A 431 -1 O SER A 429 N GLU A 383 SHEET 4 AA6 4 TYR A 439 LEU A 444 -1 O LYS A 442 N CYS A 428 SSBOND 1 CYS A 264 CYS A 324 1555 1555 2.06 SSBOND 2 CYS A 370 CYS A 428 1555 1555 2.04 LINK ND2 ASN A 300 C1 NAG B 1 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.46 LINK O6 NAG B 1 C1 FUC B 8 1555 1555 1.44 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.43 LINK O6 BMA B 3 C1 MAN B 4 1555 1555 1.44 LINK O3 BMA B 3 C1 MAN B 7 1555 1555 1.45 LINK O2 MAN B 4 C1 NAG B 5 1555 1555 1.43 LINK O4 NAG B 5 C1 GAL B 6 1555 1555 1.44 LINK NE2 HIS A 313 ZN ZN A 501 1555 1555 2.00 LINK OE1 GLU A 321 ZN ZN A 503 1555 1555 2.58 LINK OE2 GLU A 321 ZN ZN A 503 1555 1555 2.07 LINK OE1 GLU A 321 ZN ZN A 503 1555 3554 2.58 LINK OE2 GLU A 321 ZN ZN A 503 1555 3554 2.07 LINK NE2 HIS A 438 ZN ZN A 501 1555 1555 2.06 LINK ZN ZN A 501 O ACT A 504 1555 1555 2.04 LINK ZN ZN A 501 OXT ACT A 504 1555 1555 2.26 LINK ZN ZN A 501 O HOH A 641 1555 1555 1.98 LINK ZN ZN A 502 O HOH A 649 1555 1555 2.06 LINK ZN ZN A 502 O HOH A 736 1555 1555 2.16 LINK ZN ZN A 503 O HOH A 692 1555 1555 2.42 LINK ZN ZN A 503 O HOH A 692 1555 3554 2.43 CISPEP 1 TYR A 376 PRO A 377 0 0.45 CRYST1 50.090 148.090 75.790 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019964 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006753 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013194 0.00000