HEADER IMMUNE SYSTEM 26-SEP-19 6UGY TITLE CRYSTAL STRUCTURE OF THE FC FRAGMENT OF ANTI-TNFA ANTIBODY INFLIXIMAB TITLE 2 (REMICADE) IN A PRIMATIVE ORTHORHOMBIC CRYSTAL FORM, LOT C COMPND MOL_ID: 1; COMPND 2 MOLECULE: REMICADE FC; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LOTC_FC; COMPND 5 SYNONYM: IMMUNOGLOBULIN GAMMA-1 HEAVY CHAIN NIE; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: MOUSE; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10090 KEYWDS ANTIBODY, BIOLOGIC, BIOSIMILAR, INFLIXIMAB, REMICADE, FRAGMENT KEYWDS 2 CRYSTALLIZABLE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.J.MAYCLIN,T.E.EDWARDS REVDAT 4 11-OCT-23 6UGY 1 HETSYN LINK REVDAT 3 29-JUL-20 6UGY 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 12-FEB-20 6UGY 1 JRNL REVDAT 1 13-NOV-19 6UGY 0 JRNL AUTH T.F.LERCH,P.SHARPE,S.J.MAYCLIN,T.E.EDWARDS,S.POLLECK, JRNL AUTH 2 J.C.ROUSE,Q.ZOU,H.D.CONLON JRNL TITL CRYSTAL STRUCTURES OF PF-06438179/GP1111, AN INFLIXIMAB JRNL TITL 2 BIOSIMILAR. JRNL REF BIODRUGS V. 34 77 2020 JRNL REFN ISSN 1179-190X JRNL PMID 31650490 JRNL DOI 10.1007/S40259-019-00390-1 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 17047 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 852 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.0000 - 3.8151 1.00 2816 148 0.1543 0.1813 REMARK 3 2 3.8151 - 3.0284 1.00 2713 143 0.1757 0.2409 REMARK 3 3 3.0284 - 2.6457 1.00 2693 142 0.1961 0.2501 REMARK 3 4 2.6457 - 2.4038 1.00 2679 140 0.1939 0.2300 REMARK 3 5 2.4038 - 2.2316 1.00 2664 141 0.2042 0.2833 REMARK 3 6 2.2316 - 2.1000 1.00 2630 138 0.2157 0.3097 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1777 REMARK 3 ANGLE : 0.920 2436 REMARK 3 CHIRALITY : 0.054 294 REMARK 3 PLANARITY : 0.005 298 REMARK 3 DIHEDRAL : 16.803 1077 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 241 THROUGH 339 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8963 25.0421 -5.4426 REMARK 3 T TENSOR REMARK 3 T11: 0.3769 T22: 0.3552 REMARK 3 T33: 0.7604 T12: -0.0055 REMARK 3 T13: -0.0831 T23: -0.3938 REMARK 3 L TENSOR REMARK 3 L11: 1.0675 L22: 1.9417 REMARK 3 L33: 0.8547 L12: 0.8611 REMARK 3 L13: 0.0716 L23: 0.7827 REMARK 3 S TENSOR REMARK 3 S11: -0.0521 S12: -0.7758 S13: 1.3203 REMARK 3 S21: 0.4180 S22: 0.2030 S23: -0.1583 REMARK 3 S31: -0.3030 S32: -0.0566 S33: 0.4067 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 340 THROUGH 446 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.4184 -5.8014 -12.3489 REMARK 3 T TENSOR REMARK 3 T11: 0.2148 T22: 0.3050 REMARK 3 T33: 0.2845 T12: 0.0148 REMARK 3 T13: -0.0050 T23: 0.1401 REMARK 3 L TENSOR REMARK 3 L11: 2.3822 L22: 1.2064 REMARK 3 L33: 1.1296 L12: 0.4058 REMARK 3 L13: -0.2690 L23: -0.0833 REMARK 3 S TENSOR REMARK 3 S11: -0.0288 S12: -0.5809 S13: -0.8616 REMARK 3 S21: 0.1021 S22: -0.0399 S23: -0.0663 REMARK 3 S31: 0.0790 S32: 0.1723 S33: -0.0050 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UGY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1000244555. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17056 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.101 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.18 REMARK 200 R MERGE FOR SHELL (I) : 0.55800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.280 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4CDH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML PROTEIN WITH JCSG+ E7 OPT REMARK 280 SCREEN H2 (267146H2): 4% 2-PROPANOL, 200 MM ZINC ACETATE, 100 MM REMARK 280 SODIUM CACODYLATE, PH 6.8, CRYOPROTECTANT: 20% ETHYLENE GLYCOL, REMARK 280 PUCKID KUX1-9, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.99000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.99000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 25.17000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 74.32500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 25.17000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 74.32500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.99000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 25.17000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 74.32500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 37.99000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 25.17000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 74.32500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 50.34000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -37.99000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN A 503 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 657 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 715 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 736 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 196 REMARK 465 LYS A 197 REMARK 465 LYS A 198 REMARK 465 THR A 199 REMARK 465 ALA A 200 REMARK 465 ILE A 201 REMARK 465 ALA A 202 REMARK 465 ILE A 203 REMARK 465 ALA A 204 REMARK 465 VAL A 205 REMARK 465 ALA A 206 REMARK 465 LEU A 207 REMARK 465 ALA A 208 REMARK 465 GLY A 209 REMARK 465 PHE A 210 REMARK 465 ALA A 211 REMARK 465 THR A 212 REMARK 465 VAL A 213 REMARK 465 ALA A 214 REMARK 465 GLN A 215 REMARK 465 ALA A 216 REMARK 465 ASP A 217 REMARK 465 VAL A 218 REMARK 465 GLU A 219 REMARK 465 SER A 220 REMARK 465 LYS A 221 REMARK 465 SER A 222 REMARK 465 CYS A 223 REMARK 465 ASP A 224 REMARK 465 LYS A 225 REMARK 465 THR A 226 REMARK 465 HIS A 227 REMARK 465 THR A 228 REMARK 465 CYS A 229 REMARK 465 PRO A 230 REMARK 465 PRO A 231 REMARK 465 CYS A 232 REMARK 465 PRO A 233 REMARK 465 ALA A 234 REMARK 465 PRO A 235 REMARK 465 GLU A 236 REMARK 465 LEU A 237 REMARK 465 LEU A 238 REMARK 465 GLY A 239 REMARK 465 GLY A 240 REMARK 465 SER A 447 REMARK 465 PRO A 448 REMARK 465 GLY A 449 REMARK 465 LYS A 450 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 GLU A 272 CG CD OE1 OE2 REMARK 470 ASP A 273 CG OD1 OD2 REMARK 470 GLU A 275 CG CD OE1 OE2 REMARK 470 LYS A 293 CG CD CE NZ REMARK 470 ARG A 295 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 329 CG CD CE NZ REMARK 470 LYS A 363 CG CD CE NZ REMARK 470 GLN A 422 CG CD OE1 NE2 REMARK 470 LYS A 442 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O6 NAG B 1 O5 FUC B 8 1.83 REMARK 500 O3 BMA B 3 C2 MAN B 7 1.93 REMARK 500 O HOH A 648 O HOH A 717 2.02 REMARK 500 O3 BMA B 3 O5 MAN B 7 2.13 REMARK 500 O3 GAL B 6 O HOH A 601 2.14 REMARK 500 O HOH A 605 O HOH A 672 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 295 150.70 -49.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 738 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A 739 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH A 740 DISTANCE = 7.43 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 288 ND1 REMARK 620 2 HOH A 626 O 76.0 REMARK 620 3 HOH A 723 O 139.4 143.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 313 NE2 REMARK 620 2 HIS A 438 NE2 113.9 REMARK 620 3 ACT A 504 O 112.1 87.8 REMARK 620 4 ACT A 504 OXT 108.0 133.5 57.7 REMARK 620 5 HOH A 648 O 118.1 96.1 122.3 80.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 321 OE1 REMARK 620 2 GLU A 321 OE2 54.2 REMARK 620 3 GLU A 321 OE1 0.0 54.2 REMARK 620 4 GLU A 321 OE2 54.2 0.0 54.2 REMARK 620 5 HOH A 653 O 69.0 115.6 69.0 115.6 REMARK 620 6 HOH A 653 O 118.0 77.1 118.0 77.1 165.7 REMARK 620 N 1 2 3 4 5 DBREF 6UGY A 196 220 PDB 6UGY 6UGY 196 220 DBREF 6UGY A 221 450 UNP P0DOX5 IGG1_HUMAN 220 449 SEQRES 1 A 255 MET LYS LYS THR ALA ILE ALA ILE ALA VAL ALA LEU ALA SEQRES 2 A 255 GLY PHE ALA THR VAL ALA GLN ALA ASP VAL GLU SER LYS SEQRES 3 A 255 SER CYS ASP LYS THR HIS THR CYS PRO PRO CYS PRO ALA SEQRES 4 A 255 PRO GLU LEU LEU GLY GLY PRO SER VAL PHE LEU PHE PRO SEQRES 5 A 255 PRO LYS PRO LYS ASP THR LEU MET ILE SER ARG THR PRO SEQRES 6 A 255 GLU VAL THR CYS VAL VAL VAL ASP VAL SER HIS GLU ASP SEQRES 7 A 255 PRO GLU VAL LYS PHE ASN TRP TYR VAL ASP GLY VAL GLU SEQRES 8 A 255 VAL HIS ASN ALA LYS THR LYS PRO ARG GLU GLU GLN TYR SEQRES 9 A 255 ASN SER THR TYR ARG VAL VAL SER VAL LEU THR VAL LEU SEQRES 10 A 255 HIS GLN ASP TRP LEU ASN GLY LYS GLU TYR LYS CYS LYS SEQRES 11 A 255 VAL SER ASN LYS ALA LEU PRO ALA PRO ILE GLU LYS THR SEQRES 12 A 255 ILE SER LYS ALA LYS GLY GLN PRO ARG GLU PRO GLN VAL SEQRES 13 A 255 TYR THR LEU PRO PRO SER ARG ASP GLU LEU THR LYS ASN SEQRES 14 A 255 GLN VAL SER LEU THR CYS LEU VAL LYS GLY PHE TYR PRO SEQRES 15 A 255 SER ASP ILE ALA VAL GLU TRP GLU SER ASN GLY GLN PRO SEQRES 16 A 255 GLU ASN ASN TYR LYS THR THR PRO PRO VAL LEU ASP SER SEQRES 17 A 255 ASP GLY SER PHE PHE LEU TYR SER LYS LEU THR VAL ASP SEQRES 18 A 255 LYS SER ARG TRP GLN GLN GLY ASN VAL PHE SER CYS SER SEQRES 19 A 255 VAL MET HIS GLU ALA LEU HIS ASN HIS TYR THR GLN LYS SEQRES 20 A 255 SER LEU SER LEU SER PRO GLY LYS HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET MAN B 4 11 HET NAG B 5 14 HET GAL B 6 11 HET MAN B 7 11 HET FUC B 8 10 HET ZN A 501 1 HET ZN A 502 1 HET ZN A 503 1 HET ACT A 504 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM ZN ZINC ION HETNAM ACT ACETATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 2 MAN 2(C6 H12 O6) FORMUL 2 GAL C6 H12 O6 FORMUL 2 FUC C6 H12 O5 FORMUL 3 ZN 3(ZN 2+) FORMUL 6 ACT C2 H3 O2 1- FORMUL 7 HOH *140(H2 O) HELIX 1 AA1 LYS A 249 MET A 255 1 7 HELIX 2 AA2 LEU A 312 ASN A 318 1 7 HELIX 3 AA3 SER A 357 LYS A 363 5 7 HELIX 4 AA4 LYS A 417 GLY A 423 1 7 HELIX 5 AA5 LEU A 435 ASN A 437 5 3 SHEET 1 AA1 4 SER A 242 PHE A 246 0 SHEET 2 AA1 4 GLU A 261 VAL A 269 -1 O VAL A 265 N PHE A 244 SHEET 3 AA1 4 TYR A 303 THR A 310 -1 O LEU A 309 N VAL A 262 SHEET 4 AA1 4 LYS A 291 THR A 292 -1 N LYS A 291 O VAL A 308 SHEET 1 AA2 4 SER A 242 PHE A 246 0 SHEET 2 AA2 4 GLU A 261 VAL A 269 -1 O VAL A 265 N PHE A 244 SHEET 3 AA2 4 TYR A 303 THR A 310 -1 O LEU A 309 N VAL A 262 SHEET 4 AA2 4 GLU A 296 GLU A 297 -1 N GLU A 296 O ARG A 304 SHEET 1 AA3 4 VAL A 285 VAL A 287 0 SHEET 2 AA3 4 LYS A 277 VAL A 282 -1 N VAL A 282 O VAL A 285 SHEET 3 AA3 4 TYR A 322 SER A 327 -1 O LYS A 325 N ASN A 279 SHEET 4 AA3 4 ILE A 335 ILE A 339 -1 O LYS A 337 N CYS A 324 SHEET 1 AA4 4 GLN A 350 LEU A 354 0 SHEET 2 AA4 4 GLN A 365 PHE A 375 -1 O LEU A 371 N TYR A 352 SHEET 3 AA4 4 PHE A 407 ASP A 416 -1 O LEU A 413 N LEU A 368 SHEET 4 AA4 4 TYR A 394 THR A 396 -1 N LYS A 395 O LYS A 412 SHEET 1 AA5 4 GLN A 350 LEU A 354 0 SHEET 2 AA5 4 GLN A 365 PHE A 375 -1 O LEU A 371 N TYR A 352 SHEET 3 AA5 4 PHE A 407 ASP A 416 -1 O LEU A 413 N LEU A 368 SHEET 4 AA5 4 VAL A 400 LEU A 401 -1 N VAL A 400 O PHE A 408 SHEET 1 AA6 4 GLN A 389 PRO A 390 0 SHEET 2 AA6 4 ALA A 381 SER A 386 -1 N SER A 386 O GLN A 389 SHEET 3 AA6 4 PHE A 426 MET A 431 -1 O SER A 429 N GLU A 383 SHEET 4 AA6 4 TYR A 439 LEU A 444 -1 O LYS A 442 N CYS A 428 SSBOND 1 CYS A 264 CYS A 324 1555 1555 2.05 SSBOND 2 CYS A 370 CYS A 428 1555 1555 2.04 LINK ND2 ASN A 300 C1 NAG B 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O6 NAG B 1 C1 FUC B 8 1555 1555 1.44 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.43 LINK O6 BMA B 3 C1 MAN B 4 1555 1555 1.45 LINK O3 BMA B 3 C1 MAN B 7 1555 1555 1.44 LINK O2 MAN B 4 C1 NAG B 5 1555 1555 1.44 LINK O4 NAG B 5 C1 GAL B 6 1555 1555 1.44 LINK ND1 HIS A 288 ZN ZN A 502 1555 1555 2.42 LINK NE2 HIS A 313 ZN ZN A 501 1555 1555 2.02 LINK OE1 GLU A 321 ZN ZN A 503 1555 1555 2.37 LINK OE2 GLU A 321 ZN ZN A 503 1555 1555 2.47 LINK OE1 GLU A 321 ZN ZN A 503 1555 3554 2.37 LINK OE2 GLU A 321 ZN ZN A 503 1555 3554 2.47 LINK NE2 HIS A 438 ZN ZN A 501 1555 1555 2.03 LINK ZN ZN A 501 O ACT A 504 1555 1555 2.19 LINK ZN ZN A 501 OXT ACT A 504 1555 1555 2.20 LINK ZN ZN A 501 O HOH A 648 1555 1555 2.00 LINK ZN ZN A 502 O HOH A 626 1555 1555 1.77 LINK ZN ZN A 502 O HOH A 723 1555 1555 1.99 LINK ZN ZN A 503 O HOH A 653 1555 1555 2.47 LINK ZN ZN A 503 O HOH A 653 1555 3554 2.47 CISPEP 1 TYR A 376 PRO A 377 0 1.49 CRYST1 50.340 148.650 75.980 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019865 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006727 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013161 0.00000