HEADER OXIDOREDUCTASE 29-SEP-19 6UHW TITLE SOLUTION STRUCTURE OF AN ORGANIC HYDROPEROXIDE RESISTANCE PROTEIN FROM TITLE 2 BURKHOLDERIA PSEUDOMALLEI. SEATTLE STRUCTURAL GENOMICS CENTER FOR TITLE 3 INFECTIOUS DISEASE TARGET BUPSA.00074.A. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORGANIC HYDROPEROXIDE RESISTANCE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PSEUDOMALLEI (STRAIN 1710B); SOURCE 3 ORGANISM_TAXID: 320372; SOURCE 4 STRAIN: 1710B; SOURCE 5 GENE: OHR, BURPS1710B_A0863; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MELIOIDOSIS, INFECTIOUS DISEASES, DETOXIFICATION, BIOLOGICAL WARFARE KEYWDS 2 AGENT, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, SSGCID, OXIDOREDUCTASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.W.BUCHKO,SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE AUTHOR 2 (SSGCID) REVDAT 4 14-JUN-23 6UHW 1 REMARK REVDAT 3 18-DEC-19 6UHW 1 REMARK REVDAT 2 13-NOV-19 6UHW 1 JRNL REVDAT 1 16-OCT-19 6UHW 0 JRNL AUTH G.W.BUCHKO,S.N.HEWITT,A.J.NAPULI,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL BACKBONE AND SIDE CHAIN (1)H, (13)C, AND (15)N NMR JRNL TITL 2 ASSIGNMENTS FOR THE ORGANIC HYDROPEROXIDE RESISTANCE PROTEIN JRNL TITL 3 (OHR) FROM BURKHOLDERIA PSEUDOMALLEI. JRNL REF BIOMOL.NMR ASSIGN. V. 3 163 2009 JRNL REFN ESSN 1874-270X JRNL PMID 19888681 JRNL DOI 10.1007/S12104-009-9165-5 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THIRTY-FOUR PAIRS OF INTERMOLECULAR REMARK 3 MOLECULE DISTANCE RESTRAINTS, IDENTIFIED WITH THE ASSISTANCE OF REMARK 3 HOMOLOGY MODELS AND CONFIRMED IN THE NOE DATA, WERE INTRODUCED REMARK 3 TO COAX THE STRUCTURE INTO A DIMERIC STRUCTURE USING CYANA. REMARK 3 STRUCTURE DETERMINATION WAS PERFORMED ITERATIVELY USING CYANA REMARK 3 (AUTOMATED NOESY ASSIGNMENTS). A TOTAL OF 20 STRUCTURES OUT OF REMARK 3 100 WITH LOWEST TARGET FUNCTION FROM THE FINAL CYANA CALCULATION REMARK 3 WERE TAKEN AND REFINED BY RESTRAINED MOLECULAR DYNAMICS/ENERGY REMARK 3 MINIMIZATION IN EXPLICIT WATER (CNS) AFTER ADDING 0% TO THE REMARK 3 UPPER BOUNDARY LIMIT OF THE DISTANCE RESTRAINTS AND THE VDW REMARK 4 REMARK 4 6UHW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1000244639. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 0.12 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 20 MM TRIS, 100 MM SODIUM REMARK 210 CHLORIDE, 1 MM DTT, 1 MM [U-99% REMARK 210 13C; U-99% 15N] B74, 93% H2O/7% REMARK 210 D2O; 20 MM TRIS, 100 MM SODIUM REMARK 210 CHLORIDE, 1 MM DTT, 1 MM 99% 13C; REMARK 210 U-99% 15N; 50%-2H]] B74, 93% REMARK 210 H2O/7% D2O; 20 MM TRIS, 100 MM REMARK 210 SODIUM CHLORIDE, 1 MM DTT, 1 MM REMARK 210 99% 13C; U-99% 15N] B74, 99% D2O; REMARK 210 20 MM TRIS, 100 MM SODIUM REMARK 210 CHLORIDE, 1 MM DTT, 1 MM [U-10% REMARK 210 13C; U-99% 15N] B74, 93% H2O/7% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 3D C(CO)NH; 3D HNCACB; REMARK 210 3D HCCH-TOCSY; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY AROMATIC; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 3D HNCO; 3D REMARK 210 H(CCO)NH; 2D 1H-13C HSQC AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE II; VXRS REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 2007, SPARKY 3.115, TALOS REMARK 210 +, PSVS 1.5, CYANA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 33 82.79 -59.09 REMARK 500 1 GLU A 42 66.12 -103.43 REMARK 500 1 PRO A 123 -78.19 -91.83 REMARK 500 1 TYR A 124 -34.44 165.14 REMARK 500 1 SER B 31 128.27 -170.89 REMARK 500 1 TYR B 124 -56.59 70.36 REMARK 500 2 ASP A 23 25.61 -79.98 REMARK 500 2 SER A 31 101.58 -168.04 REMARK 500 2 ARG A 34 -82.34 -43.39 REMARK 500 2 GLU A 35 -72.99 46.39 REMARK 500 2 GLU A 42 35.03 -99.93 REMARK 500 2 SER A 125 145.67 -176.59 REMARK 500 2 ARG A 129 -52.78 -121.65 REMARK 500 3 GLU A 42 79.32 -66.17 REMARK 500 3 ARG A 129 -48.54 -135.66 REMARK 500 3 SER B 31 118.18 -162.87 REMARK 500 3 TYR B 124 -53.25 73.70 REMARK 500 4 ASP A 27 96.46 -161.77 REMARK 500 4 GLU A 42 37.98 -83.47 REMARK 500 4 CYS A 122 88.72 -156.62 REMARK 500 4 TYR A 124 -41.73 177.04 REMARK 500 5 ASP A 27 91.44 -161.32 REMARK 500 5 PRO A 33 14.69 -67.04 REMARK 500 5 ARG A 34 -37.12 71.80 REMARK 500 5 ALA A 39 -42.93 -167.41 REMARK 500 5 SER A 125 -81.01 -118.53 REMARK 500 5 ARG A 129 -59.52 -128.22 REMARK 500 5 PRO B 33 107.88 -49.33 REMARK 500 5 GLU B 42 80.56 -68.41 REMARK 500 6 ASP A 27 92.77 -160.46 REMARK 500 6 PRO A 33 34.55 -75.54 REMARK 500 6 ARG A 34 -92.17 52.35 REMARK 500 6 GLU A 35 -73.26 56.34 REMARK 500 6 SER B 31 144.39 -170.91 REMARK 500 6 TYR B 124 87.77 -64.81 REMARK 500 6 SER B 125 107.84 66.39 REMARK 500 6 ALA B 127 1.13 -68.29 REMARK 500 7 ALA A 39 -0.65 77.07 REMARK 500 7 SER A 125 148.96 166.37 REMARK 500 7 ARG A 129 -46.66 -132.98 REMARK 500 7 ASP B 23 25.82 -79.97 REMARK 500 7 PRO B 33 4.93 -58.24 REMARK 500 7 ARG B 34 -69.25 60.74 REMARK 500 7 GLU B 35 -37.82 -36.73 REMARK 500 8 PRO A 33 93.74 -62.28 REMARK 500 8 ARG A 34 77.30 -69.77 REMARK 500 8 GLU A 35 -35.45 -136.59 REMARK 500 8 SER B 125 147.90 178.29 REMARK 500 9 ASP A 27 90.52 -164.40 REMARK 500 9 ARG A 129 -55.79 -125.55 REMARK 500 REMARK 500 THIS ENTRY HAS 117 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16144 RELATED DB: BMRB REMARK 900 THE BMRB ENTRY CONTAINED A 21-RESIDUE N-TERMINAL TAG THAT WAS REMARK 900 REMOVED HERE. REMARK 900 RELATED ID: 30677 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF AN ORGANIC HYDROPEROXIDE RESISTANCE PROTEIN REMARK 900 FROM BURKHOLDERIA PSEUDOMALLEI. SEATTLE STRUCTURAL GENOMICS CENTER REMARK 900 FOR INFECTIOUS DISEASE TARGET BUPSA.00074.A. REMARK 900 RELATED ID: SSGCID-BUPSA.00074.A RELATED DB: TARGETTRACK DBREF 6UHW A 1 139 UNP Q3JK82 Q3JK82_BURP1 1 139 DBREF 6UHW B 1 139 UNP Q3JK82 Q3JK82_BURP1 1 139 SEQRES 1 A 139 MET ASN ILE LEU TYR LYS THR ALA ALA THR SER THR GLY SEQRES 2 A 139 GLY ARG ASP GLY ARG ALA THR SER HIS ASP GLN LYS LEU SEQRES 3 A 139 ASP VAL LYS LEU SER ALA PRO ARG GLU LEU GLY GLY ALA SEQRES 4 A 139 GLY ALA GLU GLY THR ASN PRO GLU GLN LEU PHE ALA ALA SEQRES 5 A 139 GLY TYR SER ALA CYS PHE LEU SER ALA MET LYS PHE VAL SEQRES 6 A 139 ALA GLY GLN ASN LYS GLN THR LEU PRO ALA ASP THR THR SEQRES 7 A 139 VAL THR ALA GLU VAL GLY ILE GLY PRO ASN GLU GLU GLY SEQRES 8 A 139 GLY PHE ALA LEU ASP VAL GLU LEU ARG VAL ALA LEU PRO SEQRES 9 A 139 GLY LEU ASP ALA ALA ALA ALA LYS THR LEU VAL ASP ARG SEQRES 10 A 139 ALA HIS HIS VAL CYS PRO TYR SER ASN ALA THR ARG ASN SEQRES 11 A 139 ASN VAL ALA VAL ARG LEU VAL VAL ALA SEQRES 1 B 139 MET ASN ILE LEU TYR LYS THR ALA ALA THR SER THR GLY SEQRES 2 B 139 GLY ARG ASP GLY ARG ALA THR SER HIS ASP GLN LYS LEU SEQRES 3 B 139 ASP VAL LYS LEU SER ALA PRO ARG GLU LEU GLY GLY ALA SEQRES 4 B 139 GLY ALA GLU GLY THR ASN PRO GLU GLN LEU PHE ALA ALA SEQRES 5 B 139 GLY TYR SER ALA CYS PHE LEU SER ALA MET LYS PHE VAL SEQRES 6 B 139 ALA GLY GLN ASN LYS GLN THR LEU PRO ALA ASP THR THR SEQRES 7 B 139 VAL THR ALA GLU VAL GLY ILE GLY PRO ASN GLU GLU GLY SEQRES 8 B 139 GLY PHE ALA LEU ASP VAL GLU LEU ARG VAL ALA LEU PRO SEQRES 9 B 139 GLY LEU ASP ALA ALA ALA ALA LYS THR LEU VAL ASP ARG SEQRES 10 B 139 ALA HIS HIS VAL CYS PRO TYR SER ASN ALA THR ARG ASN SEQRES 11 B 139 ASN VAL ALA VAL ARG LEU VAL VAL ALA HELIX 1 AA1 PRO A 33 GLY A 38 1 6 HELIX 2 AA2 ASN A 45 ASN A 69 1 25 HELIX 3 AA3 ASP A 107 CYS A 122 1 16 HELIX 4 AA4 ASN A 126 ASN A 131 1 6 HELIX 5 AA5 ASN B 45 LYS B 70 1 26 HELIX 6 AA6 ASP B 107 CYS B 122 1 16 HELIX 7 AA7 TYR B 124 ASN B 130 1 7 SHEET 1 AA1 6 LEU A 26 LEU A 30 0 SHEET 2 AA1 6 GLY A 17 SER A 21 -1 N ALA A 19 O VAL A 28 SHEET 3 AA1 6 TYR A 5 THR A 12 -1 N THR A 10 O THR A 20 SHEET 4 AA1 6 THR B 78 PRO B 87 -1 O ALA B 81 N ALA A 9 SHEET 5 AA1 6 PHE B 93 ALA B 102 -1 O ASP B 96 N GLY B 84 SHEET 6 AA1 6 VAL B 134 VAL B 138 1 O VAL B 137 N LEU B 99 SHEET 1 AA2 6 ALA A 133 ALA A 139 0 SHEET 2 AA2 6 PHE A 93 ALA A 102 1 N VAL A 101 O ALA A 139 SHEET 3 AA2 6 THR A 78 PRO A 87 -1 N GLY A 86 O ALA A 94 SHEET 4 AA2 6 TYR B 5 THR B 12 -1 O THR B 7 N VAL A 83 SHEET 5 AA2 6 GLY B 17 SER B 21 -1 O THR B 20 N THR B 10 SHEET 6 AA2 6 LEU B 26 LEU B 30 -1 O VAL B 28 N ALA B 19 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1