HEADER PEPTIDE BINDING PROTEIN 02-OCT-19 6UJ1 TITLE BACE2 MUTANT IN COMPLEX WITH A MACROCYCLIC COMPOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-SECRETASE 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ASPARTIC-LIKE PROTEASE 56 KDA,ASPARTYL PROTEASE 1,ASP 1, COMPND 5 BETA-SITE AMYLOID PRECURSOR PROTEIN CLEAVING ENZYME 2,BETA-SITE APP COMPND 6 CLEAVING ENZYME 2,DOWN REGION ASPARTIC PROTEASE,DRAP,MEMAPSIN-1, COMPND 7 MEMBRANE-ASSOCIATED ASPARTIC PROTEASE 1,THETA-SECRETASE; COMPND 8 EC: 3.4.23.45; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BACE2, AEPLC, ALP56, ASP21, CDA13, UNQ418/PRO852; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS ASPARTIC PROTEASE, PEPTIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.C.YEN,A.K.GHOSH,A.D.MESECAR REVDAT 3 11-OCT-23 6UJ1 1 REMARK REVDAT 2 21-APR-21 6UJ1 1 JRNL REVDAT 1 07-OCT-20 6UJ1 0 JRNL AUTH Y.C.YEN,A.M.KAMMEYER,J.TIRLANGI,A.K.GHOSH,A.D.MESECAR JRNL TITL A STRUCTURE-BASED DISCOVERY PLATFORM FOR BACE2 AND THE JRNL TITL 2 DEVELOPMENT OF SELECTIVE BACE INHIBITORS. JRNL REF ACS CHEM NEUROSCI V. 12 581 2021 JRNL REFN ESSN 1948-7193 JRNL PMID 33544569 JRNL DOI 10.1021/ACSCHEMNEURO.0C00629 REMARK 2 REMARK 2 RESOLUTION. 3.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 41.690 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 20418 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1016 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.4400 - 5.7900 0.95 2886 145 0.2189 0.2921 REMARK 3 2 5.7900 - 4.6000 0.95 2784 147 0.2237 0.2734 REMARK 3 3 4.6000 - 4.0200 0.95 2756 143 0.2220 0.2680 REMARK 3 4 4.0200 - 3.6600 0.95 2755 146 0.2694 0.3360 REMARK 3 5 3.6600 - 3.3900 0.95 2732 145 0.3092 0.3074 REMARK 3 6 3.3900 - 3.1900 0.95 2748 144 0.3360 0.3929 REMARK 3 7 3.1900 - 3.0300 0.95 2702 144 0.3390 0.3577 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.136 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 114.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 5839 REMARK 3 ANGLE : 1.564 7933 REMARK 3 CHIRALITY : 0.076 874 REMARK 3 PLANARITY : 0.010 1005 REMARK 3 DIHEDRAL : 16.360 2075 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UJ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1000244707. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 R CDTE 300K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20418 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 29.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.14 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2EWY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES (PH6) 1.4 M (NH4)2SO4 6% REMARK 280 ISOPROPANOL 4% TERTBUTANOL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.35167 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 78.70333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 78.70333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.35167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -61 REMARK 465 GLY A -60 REMARK 465 ALA A -59 REMARK 465 LEU A -58 REMARK 465 ALA A -57 REMARK 465 ARG A -56 REMARK 465 ALA A -55 REMARK 465 LEU A -54 REMARK 465 LEU A -53 REMARK 465 LEU A -52 REMARK 465 PRO A -51 REMARK 465 LEU A -50 REMARK 465 LEU A -49 REMARK 465 ALA A -48 REMARK 465 GLN A -47 REMARK 465 TRP A -46 REMARK 465 LEU A -45 REMARK 465 LEU A -44 REMARK 465 ARG A -43 REMARK 465 ALA A -42 REMARK 465 ALA A -41 REMARK 465 PRO A -40 REMARK 465 GLU A -39 REMARK 465 LEU A -38 REMARK 465 ALA A -37 REMARK 465 PRO A -36 REMARK 465 ALA A -35 REMARK 465 PRO A -34 REMARK 465 PHE A -33 REMARK 465 THR A -32 REMARK 465 LEU A -31 REMARK 465 PRO A -30 REMARK 465 LEU A -29 REMARK 465 ARG A -28 REMARK 465 VAL A -27 REMARK 465 ALA A -26 REMARK 465 ALA A -25 REMARK 465 ALA A -24 REMARK 465 THR A -23 REMARK 465 ASN A -22 REMARK 465 ARG A -21 REMARK 465 VAL A -20 REMARK 465 VAL A -19 REMARK 465 ALA A -18 REMARK 465 PRO A -17 REMARK 465 THR A -16 REMARK 465 PRO A -15 REMARK 465 GLY A -14 REMARK 465 PRO A -13 REMARK 465 GLY A -12 REMARK 465 THR A -11 REMARK 465 PRO A -10 REMARK 465 ALA A -9 REMARK 465 GLU A -8 REMARK 465 ARG A -7 REMARK 465 HIS A -6 REMARK 465 ALA A -5 REMARK 465 ASP A -4 REMARK 465 GLY A -3 REMARK 465 LEU A -2 REMARK 465 ALA A -1 REMARK 465 LEU A 0 REMARK 465 ALA A 1 REMARK 465 LEU A 2 REMARK 465 GLU A 3 REMARK 465 PRO A 4 REMARK 465 ALA A 5 REMARK 465 LEU A 6 REMARK 465 ALA A 7 REMARK 465 SER A 8 REMARK 465 PRO A 9 REMARK 465 ALA A 10 REMARK 465 GLY A 11 REMARK 465 ALA A 12 REMARK 465 ALA A 13 REMARK 465 ASN A 14 REMARK 465 PHE A 15 REMARK 465 VAL A 177 REMARK 465 ALA A 178 REMARK 465 GLY A 179 REMARK 465 SER A 180 REMARK 465 LEU A 266 REMARK 465 ILE A 267 REMARK 465 PRO A 268 REMARK 465 ALA A 269 REMARK 465 MET A 323 REMARK 465 GLY A 324 REMARK 465 ALA A 325 REMARK 465 GLY A 326 REMARK 465 GLU A 389 REMARK 465 ASP A 390 REMARK 465 VAL A 391 REMARK 465 ALA A 398 REMARK 465 MET B -61 REMARK 465 GLY B -60 REMARK 465 ALA B -59 REMARK 465 LEU B -58 REMARK 465 ALA B -57 REMARK 465 ARG B -56 REMARK 465 ALA B -55 REMARK 465 LEU B -54 REMARK 465 LEU B -53 REMARK 465 LEU B -52 REMARK 465 PRO B -51 REMARK 465 LEU B -50 REMARK 465 LEU B -49 REMARK 465 ALA B -48 REMARK 465 GLN B -47 REMARK 465 TRP B -46 REMARK 465 LEU B -45 REMARK 465 LEU B -44 REMARK 465 ARG B -43 REMARK 465 ALA B -42 REMARK 465 ALA B -41 REMARK 465 PRO B -40 REMARK 465 GLU B -39 REMARK 465 LEU B -38 REMARK 465 ALA B -37 REMARK 465 PRO B -36 REMARK 465 ALA B -35 REMARK 465 PRO B -34 REMARK 465 PHE B -33 REMARK 465 THR B -32 REMARK 465 LEU B -31 REMARK 465 PRO B -30 REMARK 465 LEU B -29 REMARK 465 ARG B -28 REMARK 465 VAL B -27 REMARK 465 ALA B -26 REMARK 465 ALA B -25 REMARK 465 ALA B -24 REMARK 465 THR B -23 REMARK 465 ASN B -22 REMARK 465 ARG B -21 REMARK 465 VAL B -20 REMARK 465 VAL B -19 REMARK 465 ALA B -18 REMARK 465 PRO B -17 REMARK 465 THR B -16 REMARK 465 PRO B -15 REMARK 465 GLY B -14 REMARK 465 PRO B -13 REMARK 465 GLY B -12 REMARK 465 THR B -11 REMARK 465 PRO B -10 REMARK 465 ALA B -9 REMARK 465 GLU B -8 REMARK 465 ARG B -7 REMARK 465 HIS B -6 REMARK 465 ALA B -5 REMARK 465 ASP B -4 REMARK 465 GLY B -3 REMARK 465 LEU B -2 REMARK 465 ALA B -1 REMARK 465 LEU B 0 REMARK 465 ALA B 1 REMARK 465 LEU B 2 REMARK 465 GLU B 3 REMARK 465 PRO B 4 REMARK 465 ALA B 5 REMARK 465 LEU B 6 REMARK 465 ALA B 7 REMARK 465 SER B 8 REMARK 465 PRO B 9 REMARK 465 ALA B 10 REMARK 465 GLY B 11 REMARK 465 ALA B 12 REMARK 465 ALA B 13 REMARK 465 ASN B 14 REMARK 465 PRO B 176 REMARK 465 VAL B 177 REMARK 465 ALA B 178 REMARK 465 GLY B 179 REMARK 465 SER B 180 REMARK 465 GLY B 181 REMARK 465 THR B 182 REMARK 465 PRO B 268 REMARK 465 ALA B 269 REMARK 465 PHE B 270 REMARK 465 SER B 286 REMARK 465 MET B 323 REMARK 465 GLY B 324 REMARK 465 ALA B 325 REMARK 465 GLY B 326 REMARK 465 LEU B 327 REMARK 465 ASN B 328 REMARK 465 TYR B 329 REMARK 465 SER B 387 REMARK 465 THR B 388 REMARK 465 GLU B 389 REMARK 465 ASP B 390 REMARK 465 VAL B 391 REMARK 465 ALA B 392 REMARK 465 SER B 393 REMARK 465 PRO B 397 REMARK 465 ALA B 398 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 107 -52.00 -133.02 REMARK 500 ASN A 108 -1.53 68.25 REMARK 500 TRP A 210 -92.83 -125.40 REMARK 500 TYR A 211 -176.57 -60.57 REMARK 500 TYR A 212 78.56 -100.16 REMARK 500 SER A 225 152.78 -35.57 REMARK 500 LYS A 362 71.51 47.14 REMARK 500 ASN B 164 48.04 -100.38 REMARK 500 ALA B 173 34.57 72.03 REMARK 500 TRP B 210 -79.63 -126.05 REMARK 500 LEU B 228 -179.83 -64.36 REMARK 500 CYS B 230 -27.89 -33.58 REMARK 500 ASN B 234 37.80 -87.86 REMARK 500 ASP B 236 -125.24 54.93 REMARK 500 LEU B 246 -168.86 -105.39 REMARK 500 THR B 284 106.75 -55.50 REMARK 500 PHE B 353 -165.21 -129.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue L3M A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue L3M B 401 DBREF 6UJ1 A -61 398 UNP Q9Y5Z0 BACE2_HUMAN 1 460 DBREF 6UJ1 B -61 398 UNP Q9Y5Z0 BACE2_HUMAN 1 460 SEQADV 6UJ1 ALA A 269 UNP Q9Y5Z0 GLU 331 ENGINEERED MUTATION SEQADV 6UJ1 ALA B 269 UNP Q9Y5Z0 GLU 331 ENGINEERED MUTATION SEQRES 1 A 460 MET GLY ALA LEU ALA ARG ALA LEU LEU LEU PRO LEU LEU SEQRES 2 A 460 ALA GLN TRP LEU LEU ARG ALA ALA PRO GLU LEU ALA PRO SEQRES 3 A 460 ALA PRO PHE THR LEU PRO LEU ARG VAL ALA ALA ALA THR SEQRES 4 A 460 ASN ARG VAL VAL ALA PRO THR PRO GLY PRO GLY THR PRO SEQRES 5 A 460 ALA GLU ARG HIS ALA ASP GLY LEU ALA LEU ALA LEU GLU SEQRES 6 A 460 PRO ALA LEU ALA SER PRO ALA GLY ALA ALA ASN PHE LEU SEQRES 7 A 460 ALA MET VAL ASP ASN LEU GLN GLY ASP SER GLY ARG GLY SEQRES 8 A 460 TYR TYR LEU GLU MET LEU ILE GLY THR PRO PRO GLN LYS SEQRES 9 A 460 LEU GLN ILE LEU VAL ASP THR GLY SER SER ASN PHE ALA SEQRES 10 A 460 VAL ALA GLY THR PRO HIS SER TYR ILE ASP THR TYR PHE SEQRES 11 A 460 ASP THR GLU ARG SER SER THR TYR ARG SER LYS GLY PHE SEQRES 12 A 460 ASP VAL THR VAL LYS TYR THR GLN GLY SER TRP THR GLY SEQRES 13 A 460 PHE VAL GLY GLU ASP LEU VAL THR ILE PRO LYS GLY PHE SEQRES 14 A 460 ASN THR SER PHE LEU VAL ASN ILE ALA THR ILE PHE GLU SEQRES 15 A 460 SER GLU ASN PHE PHE LEU PRO GLY ILE LYS TRP ASN GLY SEQRES 16 A 460 ILE LEU GLY LEU ALA TYR ALA THR LEU ALA LYS PRO SER SEQRES 17 A 460 SER SER LEU GLU THR PHE PHE ASP SER LEU VAL THR GLN SEQRES 18 A 460 ALA ASN ILE PRO ASN VAL PHE SER MET GLN MET CYS GLY SEQRES 19 A 460 ALA GLY LEU PRO VAL ALA GLY SER GLY THR ASN GLY GLY SEQRES 20 A 460 SER LEU VAL LEU GLY GLY ILE GLU PRO SER LEU TYR LYS SEQRES 21 A 460 GLY ASP ILE TRP TYR THR PRO ILE LYS GLU GLU TRP TYR SEQRES 22 A 460 TYR GLN ILE GLU ILE LEU LYS LEU GLU ILE GLY GLY GLN SEQRES 23 A 460 SER LEU ASN LEU ASP CYS ARG GLU TYR ASN ALA ASP LYS SEQRES 24 A 460 ALA ILE VAL ASP SER GLY THR THR LEU LEU ARG LEU PRO SEQRES 25 A 460 GLN LYS VAL PHE ASP ALA VAL VAL GLU ALA VAL ALA ARG SEQRES 26 A 460 ALA SER LEU ILE PRO ALA PHE SER ASP GLY PHE TRP THR SEQRES 27 A 460 GLY SER GLN LEU ALA CYS TRP THR ASN SER GLU THR PRO SEQRES 28 A 460 TRP SER TYR PHE PRO LYS ILE SER ILE TYR LEU ARG ASP SEQRES 29 A 460 GLU ASN SER SER ARG SER PHE ARG ILE THR ILE LEU PRO SEQRES 30 A 460 GLN LEU TYR ILE GLN PRO MET MET GLY ALA GLY LEU ASN SEQRES 31 A 460 TYR GLU CYS TYR ARG PHE GLY ILE SER PRO SER THR ASN SEQRES 32 A 460 ALA LEU VAL ILE GLY ALA THR VAL MET GLU GLY PHE TYR SEQRES 33 A 460 VAL ILE PHE ASP ARG ALA GLN LYS ARG VAL GLY PHE ALA SEQRES 34 A 460 ALA SER PRO CYS ALA GLU ILE ALA GLY ALA ALA VAL SER SEQRES 35 A 460 GLU ILE SER GLY PRO PHE SER THR GLU ASP VAL ALA SER SEQRES 36 A 460 ASN CYS VAL PRO ALA SEQRES 1 B 460 MET GLY ALA LEU ALA ARG ALA LEU LEU LEU PRO LEU LEU SEQRES 2 B 460 ALA GLN TRP LEU LEU ARG ALA ALA PRO GLU LEU ALA PRO SEQRES 3 B 460 ALA PRO PHE THR LEU PRO LEU ARG VAL ALA ALA ALA THR SEQRES 4 B 460 ASN ARG VAL VAL ALA PRO THR PRO GLY PRO GLY THR PRO SEQRES 5 B 460 ALA GLU ARG HIS ALA ASP GLY LEU ALA LEU ALA LEU GLU SEQRES 6 B 460 PRO ALA LEU ALA SER PRO ALA GLY ALA ALA ASN PHE LEU SEQRES 7 B 460 ALA MET VAL ASP ASN LEU GLN GLY ASP SER GLY ARG GLY SEQRES 8 B 460 TYR TYR LEU GLU MET LEU ILE GLY THR PRO PRO GLN LYS SEQRES 9 B 460 LEU GLN ILE LEU VAL ASP THR GLY SER SER ASN PHE ALA SEQRES 10 B 460 VAL ALA GLY THR PRO HIS SER TYR ILE ASP THR TYR PHE SEQRES 11 B 460 ASP THR GLU ARG SER SER THR TYR ARG SER LYS GLY PHE SEQRES 12 B 460 ASP VAL THR VAL LYS TYR THR GLN GLY SER TRP THR GLY SEQRES 13 B 460 PHE VAL GLY GLU ASP LEU VAL THR ILE PRO LYS GLY PHE SEQRES 14 B 460 ASN THR SER PHE LEU VAL ASN ILE ALA THR ILE PHE GLU SEQRES 15 B 460 SER GLU ASN PHE PHE LEU PRO GLY ILE LYS TRP ASN GLY SEQRES 16 B 460 ILE LEU GLY LEU ALA TYR ALA THR LEU ALA LYS PRO SER SEQRES 17 B 460 SER SER LEU GLU THR PHE PHE ASP SER LEU VAL THR GLN SEQRES 18 B 460 ALA ASN ILE PRO ASN VAL PHE SER MET GLN MET CYS GLY SEQRES 19 B 460 ALA GLY LEU PRO VAL ALA GLY SER GLY THR ASN GLY GLY SEQRES 20 B 460 SER LEU VAL LEU GLY GLY ILE GLU PRO SER LEU TYR LYS SEQRES 21 B 460 GLY ASP ILE TRP TYR THR PRO ILE LYS GLU GLU TRP TYR SEQRES 22 B 460 TYR GLN ILE GLU ILE LEU LYS LEU GLU ILE GLY GLY GLN SEQRES 23 B 460 SER LEU ASN LEU ASP CYS ARG GLU TYR ASN ALA ASP LYS SEQRES 24 B 460 ALA ILE VAL ASP SER GLY THR THR LEU LEU ARG LEU PRO SEQRES 25 B 460 GLN LYS VAL PHE ASP ALA VAL VAL GLU ALA VAL ALA ARG SEQRES 26 B 460 ALA SER LEU ILE PRO ALA PHE SER ASP GLY PHE TRP THR SEQRES 27 B 460 GLY SER GLN LEU ALA CYS TRP THR ASN SER GLU THR PRO SEQRES 28 B 460 TRP SER TYR PHE PRO LYS ILE SER ILE TYR LEU ARG ASP SEQRES 29 B 460 GLU ASN SER SER ARG SER PHE ARG ILE THR ILE LEU PRO SEQRES 30 B 460 GLN LEU TYR ILE GLN PRO MET MET GLY ALA GLY LEU ASN SEQRES 31 B 460 TYR GLU CYS TYR ARG PHE GLY ILE SER PRO SER THR ASN SEQRES 32 B 460 ALA LEU VAL ILE GLY ALA THR VAL MET GLU GLY PHE TYR SEQRES 33 B 460 VAL ILE PHE ASP ARG ALA GLN LYS ARG VAL GLY PHE ALA SEQRES 34 B 460 ALA SER PRO CYS ALA GLU ILE ALA GLY ALA ALA VAL SER SEQRES 35 B 460 GLU ILE SER GLY PRO PHE SER THR GLU ASP VAL ALA SER SEQRES 36 B 460 ASN CYS VAL PRO ALA HET L3M A 401 44 HET L3M B 401 44 HETNAM L3M (3S)-3-HYDROXY-N-(2-METHYLPROPYL)-N~2~-{[(4S)-17- HETNAM 2 L3M [(METHYLSULFONYL)(PROPYL)AMINO]-2-OXO-3- HETNAM 3 L3M AZATRICYCLO[13.3.1.1~6,10~]ICOSA-1(19),6(20),7,9,15, HETNAM 4 L3M 17-HEXAEN-4-YL]METHYL}-L-NORLEUCINAMIDE FORMUL 3 L3M 2(C34 H52 N4 O5 S) HELIX 1 AA1 TYR A 139 ALA A 143 5 5 HELIX 2 AA2 THR A 151 ASN A 161 1 11 HELIX 3 AA3 GLU A 193 TYR A 197 5 5 HELIX 4 AA4 ASP A 229 ALA A 235 5 7 HELIX 5 AA5 GLN A 251 SER A 265 1 15 HELIX 6 AA6 THR A 288 PHE A 293 5 6 HELIX 7 AA7 LEU A 314 TYR A 318 1 5 HELIX 8 AA8 GLY A 346 GLU A 351 1 6 HELIX 9 AA9 GLU A 373 ALA A 377 5 5 HELIX 10 AB1 PHE B 15 VAL B 19 5 5 HELIX 11 AB2 TYR B 139 ALA B 143 5 5 HELIX 12 AB3 THR B 151 ALA B 160 1 10 HELIX 13 AB4 ASP B 229 ASN B 234 1 6 HELIX 14 AB5 GLN B 251 SER B 265 1 15 HELIX 15 AB6 THR B 288 PHE B 293 5 6 HELIX 16 AB7 LEU B 314 TYR B 318 1 5 HELIX 17 AB8 GLY B 346 GLU B 351 1 6 HELIX 18 AB9 PRO B 370 GLU B 373 5 4 SHEET 1 AA1 8 LEU A 22 ASP A 25 0 SHEET 2 AA1 8 GLY A 29 ILE A 36 -1 O TYR A 31 N GLN A 23 SHEET 3 AA1 8 GLN A 41 ASP A 48 -1 O ILE A 45 N LEU A 32 SHEET 4 AA1 8 GLY A 133 GLY A 136 1 O LEU A 135 N LEU A 46 SHEET 5 AA1 8 ALA A 55 ALA A 57 -1 N ALA A 55 O ILE A 134 SHEET 6 AA1 8 PHE A 111 GLU A 122 1 O ILE A 118 N VAL A 56 SHEET 7 AA1 8 SER A 91 THR A 102 -1 N PHE A 95 O THR A 117 SHEET 8 AA1 8 ARG A 77 LYS A 86 -1 N PHE A 81 O VAL A 96 SHEET 1 AA2 4 LEU A 22 ASP A 25 0 SHEET 2 AA2 4 GLY A 29 ILE A 36 -1 O TYR A 31 N GLN A 23 SHEET 3 AA2 4 SER A 91 THR A 102 -1 O THR A 102 N LEU A 35 SHEET 4 AA2 4 ARG A 77 LYS A 86 -1 N PHE A 81 O VAL A 96 SHEET 1 AA3 6 GLY A 185 LEU A 189 0 SHEET 2 AA3 6 VAL A 165 MET A 170 -1 N SER A 167 O VAL A 188 SHEET 3 AA3 6 PHE A 353 ASP A 358 -1 O PHE A 357 N PHE A 166 SHEET 4 AA3 6 ARG A 363 ALA A 368 -1 O GLY A 365 N ILE A 356 SHEET 5 AA3 6 LYS A 198 GLU A 208 -1 N THR A 204 O VAL A 364 SHEET 6 AA3 6 GLN A 213 ILE A 214 -1 O GLN A 213 N LYS A 207 SHEET 1 AA4 5 GLN A 224 SER A 225 0 SHEET 2 AA4 5 ILE A 216 ILE A 221 -1 N ILE A 221 O GLN A 224 SHEET 3 AA4 5 ILE A 296 ARG A 301 -1 O SER A 297 N GLU A 220 SHEET 4 AA4 5 SER A 308 ILE A 313 -1 O PHE A 309 N LEU A 300 SHEET 5 AA4 5 SER A 380 SER A 383 -1 O GLU A 381 N THR A 312 SHEET 1 AA5 4 ALA A 238 VAL A 240 0 SHEET 2 AA5 4 LEU A 343 ILE A 345 1 O ILE A 345 N ILE A 239 SHEET 3 AA5 4 LEU A 247 PRO A 250 -1 N ARG A 248 O VAL A 344 SHEET 4 AA5 4 ILE A 336 SER A 339 1 O SER A 339 N LEU A 249 SHEET 1 AA6 3 ALA A 281 THR A 284 0 SHEET 2 AA6 3 TYR A 329 PHE A 334 -1 O TYR A 332 N ALA A 281 SHEET 3 AA6 3 ILE A 319 GLN A 320 -1 N GLN A 320 O ARG A 333 SHEET 1 AA7 9 ARG B 77 LYS B 86 0 SHEET 2 AA7 9 SER B 91 THR B 102 -1 O TRP B 92 N VAL B 85 SHEET 3 AA7 9 GLY B 29 ILE B 36 -1 N LEU B 35 O THR B 102 SHEET 4 AA7 9 LEU B 22 ASP B 25 -1 N GLN B 23 O TYR B 31 SHEET 5 AA7 9 GLY B 184 LEU B 189 -1 O GLY B 185 N LEU B 22 SHEET 6 AA7 9 VAL B 165 MET B 170 -1 N SER B 167 O VAL B 188 SHEET 7 AA7 9 PHE B 353 ASP B 358 -1 O PHE B 357 N PHE B 166 SHEET 8 AA7 9 ARG B 363 ALA B 368 -1 O GLY B 365 N ILE B 356 SHEET 9 AA7 9 LYS B 198 PRO B 205 -1 N THR B 204 O VAL B 364 SHEET 1 AA813 ARG B 77 LYS B 86 0 SHEET 2 AA813 SER B 91 THR B 102 -1 O TRP B 92 N VAL B 85 SHEET 3 AA813 PHE B 111 GLU B 122 -1 O PHE B 111 N VAL B 101 SHEET 4 AA813 ALA B 55 ALA B 57 1 N VAL B 56 O ILE B 118 SHEET 5 AA813 GLY B 133 GLY B 136 -1 O ILE B 134 N ALA B 55 SHEET 6 AA813 GLN B 41 ASP B 48 1 N LEU B 46 O GLY B 133 SHEET 7 AA813 GLY B 29 ILE B 36 -1 N ILE B 36 O GLN B 41 SHEET 8 AA813 LEU B 22 ASP B 25 -1 N GLN B 23 O TYR B 31 SHEET 9 AA813 GLY B 184 LEU B 189 -1 O GLY B 185 N LEU B 22 SHEET 10 AA813 VAL B 165 MET B 170 -1 N SER B 167 O VAL B 188 SHEET 11 AA813 PHE B 353 ASP B 358 -1 O PHE B 357 N PHE B 166 SHEET 12 AA813 ARG B 363 ALA B 368 -1 O GLY B 365 N ILE B 356 SHEET 13 AA813 LYS B 198 PRO B 205 -1 N THR B 204 O VAL B 364 SHEET 1 AA9 5 GLN B 224 SER B 225 0 SHEET 2 AA9 5 ILE B 216 ILE B 221 -1 N ILE B 221 O GLN B 224 SHEET 3 AA9 5 ILE B 296 ARG B 301 -1 O SER B 297 N GLU B 220 SHEET 4 AA9 5 SER B 308 ILE B 313 -1 O ILE B 313 N ILE B 296 SHEET 5 AA9 5 SER B 380 SER B 383 -1 O GLU B 381 N THR B 312 SHEET 1 AB1 4 ALA B 238 VAL B 240 0 SHEET 2 AB1 4 LEU B 343 ILE B 345 1 O ILE B 345 N ILE B 239 SHEET 3 AB1 4 LEU B 247 PRO B 250 -1 N ARG B 248 O VAL B 344 SHEET 4 AB1 4 ILE B 336 SER B 339 1 O SER B 339 N LEU B 249 SHEET 1 AB2 3 ALA B 281 CYS B 282 0 SHEET 2 AB2 3 CYS B 331 PHE B 334 -1 O TYR B 332 N ALA B 281 SHEET 3 AB2 3 ILE B 319 PRO B 321 -1 N GLN B 320 O ARG B 333 SSBOND 1 CYS A 171 CYS A 371 1555 1555 2.00 SSBOND 2 CYS A 230 CYS A 395 1555 1555 2.02 SSBOND 3 CYS A 282 CYS A 331 1555 1555 2.04 SSBOND 4 CYS B 171 CYS B 371 1555 1555 2.03 SSBOND 5 CYS B 230 CYS B 395 1555 1555 2.04 SSBOND 6 CYS B 282 CYS B 331 1555 1555 2.00 CISPEP 1 THR A 38 PRO A 39 0 -1.61 CISPEP 2 LYS A 144 PRO A 145 0 16.47 CISPEP 3 GLY A 384 PRO A 385 0 -5.72 CISPEP 4 THR B 38 PRO B 39 0 21.26 CISPEP 5 LYS B 144 PRO B 145 0 -1.75 CISPEP 6 GLY B 384 PRO B 385 0 8.24 SITE 1 AC1 16 ASP A 48 GLY A 50 LYS A 86 TYR A 87 SITE 2 AC1 16 THR A 88 GLN A 89 PHE A 124 TYR A 211 SITE 3 AC1 16 ILE A 239 ASP A 241 GLY A 243 THR A 244 SITE 4 AC1 16 THR A 245 LEU A 246 ARG A 248 SER A 337 SITE 1 AC2 18 LEU B 46 ASP B 48 GLY B 50 SER B 51 SITE 2 AC2 18 TYR B 87 THR B 88 GLN B 89 PHE B 124 SITE 3 AC2 18 TRP B 131 TYR B 211 ILE B 239 ASP B 241 SITE 4 AC2 18 GLY B 243 THR B 244 THR B 245 LEU B 246 SITE 5 AC2 18 ARG B 248 SER B 337 CRYST1 123.068 123.068 118.055 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008126 0.004691 0.000000 0.00000 SCALE2 0.000000 0.009383 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008471 0.00000