HEADER TRANSFERASE 02-OCT-19 6UJ5 TITLE CRYSTAL STRUCTURE OF CAB1 PANTOTHENATE KINASE FROM SACCHAROMYCES TITLE 2 CEREVISIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PANTOTHENATE KINASE CAB1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: COENZYME A BIOSYNTHESIS PROTEIN 1,PANTOTHENIC ACID KINASE COMPND 5 CAB1; COMPND 6 EC: 2.7.1.33; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: CAB1, YDR531W; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: BG1861 KEYWDS SSGCID, NIH, NIAID, SEATTLE CHILDRENS, UW, UCB, PANTOTHENATE KINASE, KEYWDS 2 PANK, CAB1, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER KEYWDS 3 FOR INFECTIOUS DISEASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 13-MAR-24 6UJ5 1 REMARK REVDAT 1 07-OCT-20 6UJ5 0 JRNL AUTH D.FOX III,P.S.HORANYI,J.ABENDROTH,D.D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF CAB1 PANTOTHENATE KINASE FROM JRNL TITL 2 SACCHAROMYCES CEREVISIAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17RC1_3602 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 56688 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.530 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.0700 - 4.3400 0.98 3953 145 0.1533 0.1713 REMARK 3 2 4.3400 - 3.4400 0.98 3978 145 0.1420 0.1629 REMARK 3 3 3.4400 - 3.0100 0.98 3955 145 0.1683 0.2313 REMARK 3 4 3.0100 - 2.7300 0.98 3926 144 0.1843 0.2238 REMARK 3 5 2.7300 - 2.5400 0.98 3927 143 0.1775 0.2177 REMARK 3 6 2.5400 - 2.3900 0.98 3922 144 0.1773 0.2154 REMARK 3 7 2.3900 - 2.2700 0.97 3932 143 0.1740 0.2042 REMARK 3 8 2.2700 - 2.1700 0.96 3880 142 0.1798 0.2407 REMARK 3 9 2.1700 - 2.0900 0.97 3905 142 0.1829 0.2170 REMARK 3 10 2.0900 - 2.0100 0.96 3866 142 0.1962 0.2563 REMARK 3 11 2.0100 - 1.9500 0.96 3865 142 0.1936 0.2515 REMARK 3 12 1.9500 - 1.8900 0.96 3873 141 0.2033 0.2482 REMARK 3 13 1.8900 - 1.8400 0.96 3830 140 0.2232 0.2570 REMARK 3 14 1.8400 - 1.8000 0.96 3876 142 0.2500 0.3101 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5294 REMARK 3 ANGLE : 0.715 7182 REMARK 3 CHIRALITY : 0.053 785 REMARK 3 PLANARITY : 0.004 924 REMARK 3 DIHEDRAL : 11.218 3082 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 229 THROUGH 365 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.7832 68.7557 52.2041 REMARK 3 T TENSOR REMARK 3 T11: 0.1669 T22: 0.1476 REMARK 3 T33: 0.1584 T12: 0.0148 REMARK 3 T13: -0.0045 T23: -0.0241 REMARK 3 L TENSOR REMARK 3 L11: 1.0341 L22: 1.7593 REMARK 3 L33: 0.9083 L12: 0.2593 REMARK 3 L13: 0.1284 L23: -0.4701 REMARK 3 S TENSOR REMARK 3 S11: -0.0250 S12: 0.0034 S13: 0.0736 REMARK 3 S21: 0.1242 S22: -0.0022 S23: -0.0857 REMARK 3 S31: -0.0978 S32: 0.0669 S33: -0.0030 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 14 THROUGH 158 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.9383 87.4962 22.1447 REMARK 3 T TENSOR REMARK 3 T11: 0.2219 T22: 0.2614 REMARK 3 T33: 0.1766 T12: -0.0310 REMARK 3 T13: -0.0274 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 1.3301 L22: 5.6114 REMARK 3 L33: 1.0982 L12: 0.8941 REMARK 3 L13: -0.0369 L23: -0.5181 REMARK 3 S TENSOR REMARK 3 S11: -0.1001 S12: 0.2317 S13: 0.1519 REMARK 3 S21: -0.2257 S22: 0.1449 S23: 0.0021 REMARK 3 S31: 0.0085 S32: 0.0044 S33: -0.0499 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 159 THROUGH 369 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.9463 68.3127 34.8528 REMARK 3 T TENSOR REMARK 3 T11: 0.1795 T22: 0.2000 REMARK 3 T33: 0.2111 T12: -0.0037 REMARK 3 T13: 0.0293 T23: -0.0306 REMARK 3 L TENSOR REMARK 3 L11: 1.0498 L22: 1.4893 REMARK 3 L33: 1.2628 L12: -0.0823 REMARK 3 L13: 0.3671 L23: -0.3364 REMARK 3 S TENSOR REMARK 3 S11: -0.0097 S12: 0.1280 S13: -0.0528 REMARK 3 S21: -0.1247 S22: 0.0325 S23: -0.1091 REMARK 3 S31: 0.1141 S32: 0.1421 S33: -0.0227 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 14 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.9307 46.2686 63.4004 REMARK 3 T TENSOR REMARK 3 T11: 0.2710 T22: 0.2638 REMARK 3 T33: 0.2083 T12: -0.0559 REMARK 3 T13: -0.0192 T23: 0.0335 REMARK 3 L TENSOR REMARK 3 L11: 2.3057 L22: 4.2857 REMARK 3 L33: 1.2076 L12: -1.7666 REMARK 3 L13: 0.6258 L23: -1.2883 REMARK 3 S TENSOR REMARK 3 S11: 0.0919 S12: -0.2222 S13: -0.1265 REMARK 3 S21: 0.3550 S22: 0.0128 S23: -0.0533 REMARK 3 S31: -0.0172 S32: -0.0011 S33: -0.1073 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 176 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.7676 69.3902 51.8589 REMARK 3 T TENSOR REMARK 3 T11: 0.1808 T22: 0.2016 REMARK 3 T33: 0.2002 T12: 0.0311 REMARK 3 T13: -0.0160 T23: -0.0207 REMARK 3 L TENSOR REMARK 3 L11: 2.7231 L22: 2.9554 REMARK 3 L33: 1.4589 L12: 1.2885 REMARK 3 L13: 0.4038 L23: -0.1766 REMARK 3 S TENSOR REMARK 3 S11: -0.0139 S12: -0.1679 S13: -0.0868 REMARK 3 S21: 0.1234 S22: -0.0526 S23: -0.0845 REMARK 3 S31: -0.0274 S32: 0.1152 S33: 0.0517 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UJ5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1000244718. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56702 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.52900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.290 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2, 0.1M TRIS-HCL, PH8.5, 25% REMARK 280 W/V PEG3,350 AND CRYO-PROTECTED IN 20% ETHYLENE GLYCOL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 MET A 9 REMARK 465 PRO A 10 REMARK 465 ARG A 11 REMARK 465 ILE A 12 REMARK 465 THR A 13 REMARK 465 GLY A 149 REMARK 465 THR A 150 REMARK 465 MET A 151 REMARK 465 ASP A 152 REMARK 465 SER A 153 REMARK 465 LYS A 154 REMARK 465 ASP A 231 REMARK 465 TYR A 232 REMARK 465 ASN A 233 REMARK 465 LYS A 234 REMARK 465 ILE A 235 REMARK 465 GLY A 236 REMARK 465 LEU A 237 REMARK 465 ASN A 252 REMARK 465 ARG A 253 REMARK 465 MET A 254 REMARK 465 THR A 255 REMARK 465 SER A 256 REMARK 465 ASN A 257 REMARK 465 LYS A 258 REMARK 465 SER A 259 REMARK 465 LEU A 260 REMARK 465 GLU A 261 REMARK 465 ASN A 262 REMARK 465 ASN A 263 REMARK 465 GLU A 264 REMARK 465 ASN A 265 REMARK 465 LYS A 266 REMARK 465 ARG A 366 REMARK 465 HIS A 367 REMARK 465 SER A 368 REMARK 465 SER A 369 REMARK 465 THR A 370 REMARK 465 LYS A 371 REMARK 465 LYS A 372 REMARK 465 THR A 373 REMARK 465 SER A 374 REMARK 465 THR A 375 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 MET B 9 REMARK 465 PRO B 10 REMARK 465 ARG B 11 REMARK 465 ILE B 12 REMARK 465 THR B 13 REMARK 465 MET B 151 REMARK 465 ASP B 152 REMARK 465 ASP B 231 REMARK 465 TYR B 232 REMARK 465 ASN B 233 REMARK 465 LYS B 234 REMARK 465 ILE B 235 REMARK 465 GLY B 236 REMARK 465 MET B 254 REMARK 465 THR B 255 REMARK 465 SER B 256 REMARK 465 ASN B 257 REMARK 465 LYS B 258 REMARK 465 SER B 259 REMARK 465 LEU B 260 REMARK 465 GLU B 261 REMARK 465 ASN B 262 REMARK 465 ASN B 263 REMARK 465 GLU B 264 REMARK 465 THR B 370 REMARK 465 LYS B 371 REMARK 465 LYS B 372 REMARK 465 THR B 373 REMARK 465 SER B 374 REMARK 465 THR B 375 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 21 CG OD1 OD2 REMARK 470 THR A 57 OG1 CG2 REMARK 470 GLU A 58 CG CD OE1 OE2 REMARK 470 LYS A 59 CG CD CE NZ REMARK 470 ASP A 61 CG OD1 OD2 REMARK 470 LYS A 62 CG CD CE NZ REMARK 470 GLU A 65 CG CD OE1 OE2 REMARK 470 LYS A 72 CG CD CE NZ REMARK 470 GLU A 73 CG CD OE1 OE2 REMARK 470 ARG A 142 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 177 CG OD1 ND2 REMARK 470 GLN A 203 CG CD OE1 NE2 REMARK 470 THR A 230 OG1 CG2 REMARK 470 SER A 239 OG REMARK 470 LEU A 267 CG CD1 CD2 REMARK 470 GLU A 272 CG CD OE1 OE2 REMARK 470 GLU A 275 CG CD OE1 OE2 REMARK 470 LYS A 276 CG CD CE NZ REMARK 470 ASN A 278 CG OD1 ND2 REMARK 470 GLN A 313 CG CD OE1 NE2 REMARK 470 SER A 365 OG REMARK 470 LYS B 62 CG CD CE NZ REMARK 470 LYS B 72 CG CD CE NZ REMARK 470 GLU B 73 CG CD OE1 OE2 REMARK 470 ARG B 80 CG CD NE CZ NH1 NH2 REMARK 470 THR B 150 OG1 CG2 REMARK 470 SER B 153 OG REMARK 470 LYS B 154 CG CD CE NZ REMARK 470 LYS B 238 CG CD CE NZ REMARK 470 ASN B 265 CG OD1 ND2 REMARK 470 LYS B 266 CG CD CE NZ REMARK 470 GLU B 272 CG CD OE1 OE2 REMARK 470 LYS B 276 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 253 O HOH B 401 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 75 27.54 -142.37 REMARK 500 SER A 166 86.81 -68.57 REMARK 500 SER A 270 -12.33 -151.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SACEA.19172.A RELATED DB: TARGETTRACK DBREF 6UJ5 A 9 375 UNP Q04430 PANK_YEAST 1 367 DBREF 6UJ5 B 9 375 UNP Q04430 PANK_YEAST 1 367 SEQADV 6UJ5 MET A 1 UNP Q04430 INITIATING METHIONINE SEQADV 6UJ5 ALA A 2 UNP Q04430 EXPRESSION TAG SEQADV 6UJ5 HIS A 3 UNP Q04430 EXPRESSION TAG SEQADV 6UJ5 HIS A 4 UNP Q04430 EXPRESSION TAG SEQADV 6UJ5 HIS A 5 UNP Q04430 EXPRESSION TAG SEQADV 6UJ5 HIS A 6 UNP Q04430 EXPRESSION TAG SEQADV 6UJ5 HIS A 7 UNP Q04430 EXPRESSION TAG SEQADV 6UJ5 HIS A 8 UNP Q04430 EXPRESSION TAG SEQADV 6UJ5 MET B 1 UNP Q04430 INITIATING METHIONINE SEQADV 6UJ5 ALA B 2 UNP Q04430 EXPRESSION TAG SEQADV 6UJ5 HIS B 3 UNP Q04430 EXPRESSION TAG SEQADV 6UJ5 HIS B 4 UNP Q04430 EXPRESSION TAG SEQADV 6UJ5 HIS B 5 UNP Q04430 EXPRESSION TAG SEQADV 6UJ5 HIS B 6 UNP Q04430 EXPRESSION TAG SEQADV 6UJ5 HIS B 7 UNP Q04430 EXPRESSION TAG SEQADV 6UJ5 HIS B 8 UNP Q04430 EXPRESSION TAG SEQRES 1 A 375 MET ALA HIS HIS HIS HIS HIS HIS MET PRO ARG ILE THR SEQRES 2 A 375 GLN GLU ILE SER TYR ASN CYS ASP TYR GLY ASP ASN THR SEQRES 3 A 375 PHE ASN LEU ALA ILE ASP ILE GLY GLY THR LEU ALA LYS SEQRES 4 A 375 VAL VAL PHE SER PRO ILE HIS SER ASN ARG LEU MET PHE SEQRES 5 A 375 TYR THR ILE GLU THR GLU LYS ILE ASP LYS PHE MET GLU SEQRES 6 A 375 LEU LEU HIS SER ILE ILE LYS GLU HIS ASN ASN GLY CYS SEQRES 7 A 375 TYR ARG MET THR HIS ILE ILE ALA THR GLY GLY GLY ALA SEQRES 8 A 375 PHE LYS PHE TYR ASP LEU LEU TYR GLU ASN PHE PRO GLN SEQRES 9 A 375 ILE LYS GLY ILE SER ARG PHE GLU GLU MET GLU GLY LEU SEQRES 10 A 375 ILE HIS GLY LEU ASP PHE PHE ILE HIS GLU ILE PRO ASP SEQRES 11 A 375 GLU VAL PHE THR TYR ASN ASP GLN ASP GLY GLU ARG ILE SEQRES 12 A 375 ILE PRO THR SER SER GLY THR MET ASP SER LYS ALA ILE SEQRES 13 A 375 TYR PRO TYR LEU LEU VAL ASN ILE GLY SER GLY VAL SER SEQRES 14 A 375 ILE LEU LYS VAL THR GLU PRO ASN ASN PHE SER ARG VAL SEQRES 15 A 375 GLY GLY SER SER LEU GLY GLY GLY THR LEU TRP GLY LEU SEQRES 16 A 375 LEU SER LEU ILE THR GLY ALA GLN THR TYR ASP GLN MET SEQRES 17 A 375 LEU ASP TRP ALA GLN GLU GLY ASP ASN SER SER VAL ASP SEQRES 18 A 375 MET LEU VAL GLY ASP ILE TYR GLY THR ASP TYR ASN LYS SEQRES 19 A 375 ILE GLY LEU LYS SER SER ALA ILE ALA SER SER PHE GLY SEQRES 20 A 375 LYS VAL PHE GLN ASN ARG MET THR SER ASN LYS SER LEU SEQRES 21 A 375 GLU ASN ASN GLU ASN LYS LEU TYR SER SER HIS GLU SER SEQRES 22 A 375 ILE GLU LYS ASN ASN GLY GLN MET PHE LYS ASN PRO ASP SEQRES 23 A 375 ILE CYS LYS SER LEU LEU PHE ALA ILE SER ASN ASN ILE SEQRES 24 A 375 GLY GLN ILE ALA TYR LEU GLN ALA LYS ILE ASN ASN ILE SEQRES 25 A 375 GLN ASN ILE TYR PHE GLY GLY SER TYR THR ARG GLY HIS SEQRES 26 A 375 LEU THR THR MET ASN THR LEU SER TYR ALA ILE ASN PHE SEQRES 27 A 375 TRP SER GLN GLY SER LYS GLN ALA PHE PHE LEU LYS HIS SEQRES 28 A 375 GLU GLY TYR LEU GLY ALA MET GLY ALA PHE LEU SER ALA SEQRES 29 A 375 SER ARG HIS SER SER THR LYS LYS THR SER THR SEQRES 1 B 375 MET ALA HIS HIS HIS HIS HIS HIS MET PRO ARG ILE THR SEQRES 2 B 375 GLN GLU ILE SER TYR ASN CYS ASP TYR GLY ASP ASN THR SEQRES 3 B 375 PHE ASN LEU ALA ILE ASP ILE GLY GLY THR LEU ALA LYS SEQRES 4 B 375 VAL VAL PHE SER PRO ILE HIS SER ASN ARG LEU MET PHE SEQRES 5 B 375 TYR THR ILE GLU THR GLU LYS ILE ASP LYS PHE MET GLU SEQRES 6 B 375 LEU LEU HIS SER ILE ILE LYS GLU HIS ASN ASN GLY CYS SEQRES 7 B 375 TYR ARG MET THR HIS ILE ILE ALA THR GLY GLY GLY ALA SEQRES 8 B 375 PHE LYS PHE TYR ASP LEU LEU TYR GLU ASN PHE PRO GLN SEQRES 9 B 375 ILE LYS GLY ILE SER ARG PHE GLU GLU MET GLU GLY LEU SEQRES 10 B 375 ILE HIS GLY LEU ASP PHE PHE ILE HIS GLU ILE PRO ASP SEQRES 11 B 375 GLU VAL PHE THR TYR ASN ASP GLN ASP GLY GLU ARG ILE SEQRES 12 B 375 ILE PRO THR SER SER GLY THR MET ASP SER LYS ALA ILE SEQRES 13 B 375 TYR PRO TYR LEU LEU VAL ASN ILE GLY SER GLY VAL SER SEQRES 14 B 375 ILE LEU LYS VAL THR GLU PRO ASN ASN PHE SER ARG VAL SEQRES 15 B 375 GLY GLY SER SER LEU GLY GLY GLY THR LEU TRP GLY LEU SEQRES 16 B 375 LEU SER LEU ILE THR GLY ALA GLN THR TYR ASP GLN MET SEQRES 17 B 375 LEU ASP TRP ALA GLN GLU GLY ASP ASN SER SER VAL ASP SEQRES 18 B 375 MET LEU VAL GLY ASP ILE TYR GLY THR ASP TYR ASN LYS SEQRES 19 B 375 ILE GLY LEU LYS SER SER ALA ILE ALA SER SER PHE GLY SEQRES 20 B 375 LYS VAL PHE GLN ASN ARG MET THR SER ASN LYS SER LEU SEQRES 21 B 375 GLU ASN ASN GLU ASN LYS LEU TYR SER SER HIS GLU SER SEQRES 22 B 375 ILE GLU LYS ASN ASN GLY GLN MET PHE LYS ASN PRO ASP SEQRES 23 B 375 ILE CYS LYS SER LEU LEU PHE ALA ILE SER ASN ASN ILE SEQRES 24 B 375 GLY GLN ILE ALA TYR LEU GLN ALA LYS ILE ASN ASN ILE SEQRES 25 B 375 GLN ASN ILE TYR PHE GLY GLY SER TYR THR ARG GLY HIS SEQRES 26 B 375 LEU THR THR MET ASN THR LEU SER TYR ALA ILE ASN PHE SEQRES 27 B 375 TRP SER GLN GLY SER LYS GLN ALA PHE PHE LEU LYS HIS SEQRES 28 B 375 GLU GLY TYR LEU GLY ALA MET GLY ALA PHE LEU SER ALA SEQRES 29 B 375 SER ARG HIS SER SER THR LYS LYS THR SER THR HET MG A 401 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG MG 2+ FORMUL 4 HOH *252(H2 O) HELIX 1 AA1 LYS A 59 ASN A 75 1 17 HELIX 2 AA2 CYS A 78 ARG A 80 5 3 HELIX 3 AA3 PHE A 94 PHE A 102 1 9 HELIX 4 AA4 GLU A 112 ILE A 128 1 17 HELIX 5 AA5 GLY A 188 GLY A 201 1 14 HELIX 6 AA6 THR A 204 GLY A 215 1 12 HELIX 7 AA7 ASP A 216 VAL A 220 5 5 HELIX 8 AA8 VAL A 224 GLY A 229 1 6 HELIX 9 AA9 ASN A 284 ASN A 310 1 27 HELIX 10 AB1 HIS A 325 GLN A 341 1 17 HELIX 11 AB2 HIS A 351 GLY A 353 5 3 HELIX 12 AB3 TYR A 354 SER A 365 1 12 HELIX 13 AB4 LYS B 59 ASN B 75 1 17 HELIX 14 AB5 CYS B 78 ARG B 80 5 3 HELIX 15 AB6 GLY B 89 PHE B 94 1 6 HELIX 16 AB7 PHE B 94 PHE B 102 1 9 HELIX 17 AB8 GLU B 112 ILE B 128 1 17 HELIX 18 AB9 GLY B 188 GLY B 201 1 14 HELIX 19 AC1 THR B 204 GLY B 215 1 12 HELIX 20 AC2 ASP B 216 VAL B 220 5 5 HELIX 21 AC3 VAL B 224 GLY B 229 1 6 HELIX 22 AC4 PHE B 246 ASN B 252 1 7 HELIX 23 AC5 HIS B 271 GLY B 279 1 9 HELIX 24 AC6 LYS B 283 ASN B 310 1 28 HELIX 25 AC7 HIS B 325 SER B 340 1 16 HELIX 26 AC8 HIS B 351 GLY B 353 5 3 HELIX 27 AC9 TYR B 354 SER B 369 1 16 SHEET 1 AA1 6 GLU A 15 SER A 17 0 SHEET 2 AA1 6 ARG A 49 ILE A 55 -1 O LEU A 50 N ILE A 16 SHEET 3 AA1 6 ALA A 38 PHE A 42 -1 N VAL A 40 O TYR A 53 SHEET 4 AA1 6 PHE A 27 ILE A 33 -1 N ASP A 32 O LYS A 39 SHEET 5 AA1 6 THR A 82 THR A 87 1 O THR A 87 N ILE A 31 SHEET 6 AA1 6 GLY A 107 ARG A 110 1 O SER A 109 N ALA A 86 SHEET 1 AA2 7 GLY A 140 ILE A 144 0 SHEET 2 AA2 7 VAL A 132 ASN A 136 -1 N VAL A 132 O ILE A 144 SHEET 3 AA2 7 GLN A 345 LEU A 349 -1 O PHE A 348 N PHE A 133 SHEET 4 AA2 7 ASN A 314 GLY A 319 1 N ILE A 315 O PHE A 347 SHEET 5 AA2 7 TYR A 159 ILE A 164 1 N LEU A 160 O TYR A 316 SHEET 6 AA2 7 VAL A 168 GLU A 175 -1 O SER A 169 N ASN A 163 SHEET 7 AA2 7 ASN A 178 SER A 185 -1 O SER A 185 N VAL A 168 SHEET 1 AA3 2 MET A 222 LEU A 223 0 SHEET 2 AA3 2 ILE A 242 SER A 244 -1 O SER A 244 N MET A 222 SHEET 1 AA4 2 MET A 281 LYS A 283 0 SHEET 2 AA4 2 TYR B 268 SER B 270 -1 O SER B 269 N PHE A 282 SHEET 1 AA5 6 ILE B 16 SER B 17 0 SHEET 2 AA5 6 ARG B 49 GLU B 56 -1 O LEU B 50 N ILE B 16 SHEET 3 AA5 6 LEU B 37 PHE B 42 -1 N VAL B 40 O TYR B 53 SHEET 4 AA5 6 PHE B 27 ILE B 33 -1 N ASP B 32 O LYS B 39 SHEET 5 AA5 6 THR B 82 THR B 87 1 O HIS B 83 N LEU B 29 SHEET 6 AA5 6 GLY B 107 ARG B 110 1 O SER B 109 N ALA B 86 SHEET 1 AA6 7 GLY B 140 ILE B 144 0 SHEET 2 AA6 7 VAL B 132 ASN B 136 -1 N VAL B 132 O ILE B 144 SHEET 3 AA6 7 GLN B 345 LEU B 349 -1 O PHE B 348 N PHE B 133 SHEET 4 AA6 7 ASN B 314 GLY B 319 1 N ILE B 315 O PHE B 347 SHEET 5 AA6 7 TYR B 159 ILE B 164 1 N VAL B 162 O TYR B 316 SHEET 6 AA6 7 VAL B 168 GLU B 175 -1 O VAL B 173 N TYR B 159 SHEET 7 AA6 7 ASN B 178 SER B 185 -1 O SER B 180 N LYS B 172 SHEET 1 AA7 2 MET B 222 LEU B 223 0 SHEET 2 AA7 2 ILE B 242 SER B 244 -1 O SER B 244 N MET B 222 CISPEP 1 TYR A 157 PRO A 158 0 -6.64 CISPEP 2 TYR B 157 PRO B 158 0 -2.89 CRYST1 50.870 52.750 71.130 71.00 85.59 64.61 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019658 -0.009331 0.001603 0.00000 SCALE2 0.000000 0.020985 -0.007206 0.00000 SCALE3 0.000000 0.000000 0.014909 0.00000