HEADER LIGASE 02-OCT-19 6UJD TITLE CRYSTAL STRUCTURE OF CYSTEINE-TRNA LIGASE FROM ELIZABETHKINGIA SP. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTEINE--TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ELMEA.00133.A.B1; COMPND 5 SYNONYM: CYSTEINYL-TRNA SYNTHETASE,CYSRS; COMPND 6 EC: 6.1.1.16; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ELIZABETHKINGIA SP.; SOURCE 3 ORGANISM_TAXID: 1939629; SOURCE 4 GENE: CYSS, BMF97_00660; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: ELMEA.00133.A.B1 KEYWDS SSGCID, STRUCTURAL GENOMICS, ELIZABETHKINGIA SP, CYSTEINE-TRNA KEYWDS 2 LIGASE, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 3 LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 11-OCT-23 6UJD 1 REMARK REVDAT 2 12-FEB-20 6UJD 1 SEQADV REVDAT 1 16-OCT-19 6UJD 0 JRNL AUTH J.ABENDROTH,D.M.DRANOW,D.D.LORIMER,P.S.HORANYI,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF CYSTEINE-TRNA LIGASE FROM JRNL TITL 2 ELIZABETHKINGIA SP. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17RC2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 20791 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.420 REMARK 3 FREE R VALUE TEST SET COUNT : 2166 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.4600 - 6.4100 0.99 1402 141 0.1823 0.1910 REMARK 3 2 6.4000 - 5.0900 1.00 1297 145 0.1664 0.2036 REMARK 3 3 5.0800 - 4.4400 1.00 1260 155 0.1319 0.1622 REMARK 3 4 4.4400 - 4.0400 1.00 1231 160 0.1354 0.1812 REMARK 3 5 4.0400 - 3.7500 1.00 1240 148 0.1610 0.2226 REMARK 3 6 3.7500 - 3.5300 1.00 1243 137 0.1895 0.2412 REMARK 3 7 3.5300 - 3.3500 1.00 1230 153 0.2000 0.2536 REMARK 3 8 3.3500 - 3.2100 1.00 1246 126 0.2000 0.2668 REMARK 3 9 3.2100 - 3.0800 1.00 1210 144 0.2085 0.2550 REMARK 3 10 3.0800 - 2.9800 1.00 1224 143 0.2197 0.3253 REMARK 3 11 2.9800 - 2.8800 1.00 1189 164 0.2199 0.2703 REMARK 3 12 2.8800 - 2.8000 1.00 1232 128 0.1940 0.2562 REMARK 3 13 2.8000 - 2.7300 1.00 1215 137 0.2138 0.2499 REMARK 3 14 2.7300 - 2.6600 1.00 1223 141 0.2154 0.2806 REMARK 3 15 2.6600 - 2.6000 1.00 1183 144 0.2479 0.3155 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.312 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.205 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 68.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3310 REMARK 3 ANGLE : 0.623 4480 REMARK 3 CHIRALITY : 0.044 487 REMARK 3 PLANARITY : 0.004 570 REMARK 3 DIHEDRAL : 15.846 1938 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.8667 7.6450 39.1147 REMARK 3 T TENSOR REMARK 3 T11: 0.4088 T22: 0.4626 REMARK 3 T33: 0.4873 T12: -0.0972 REMARK 3 T13: -0.0611 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 1.5073 L22: 2.1235 REMARK 3 L33: 3.6389 L12: 0.0946 REMARK 3 L13: -0.6429 L23: 0.0200 REMARK 3 S TENSOR REMARK 3 S11: 0.1591 S12: -0.0036 S13: -0.0364 REMARK 3 S21: -0.0109 S22: -0.1403 S23: 0.2602 REMARK 3 S31: 0.2225 S32: -0.2830 S33: -0.0280 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 114 THROUGH 209 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.0607 16.4565 40.0727 REMARK 3 T TENSOR REMARK 3 T11: 0.5701 T22: 0.5470 REMARK 3 T33: 0.5622 T12: -0.1322 REMARK 3 T13: -0.0023 T23: 0.0503 REMARK 3 L TENSOR REMARK 3 L11: 3.1832 L22: 2.0121 REMARK 3 L33: 1.6362 L12: -1.2292 REMARK 3 L13: 0.4313 L23: -0.4908 REMARK 3 S TENSOR REMARK 3 S11: 0.2076 S12: -0.0229 S13: -0.1582 REMARK 3 S21: 0.0220 S22: 0.1135 S23: 0.4166 REMARK 3 S31: 0.0731 S32: -0.4695 S33: -0.3560 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 210 THROUGH 430 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.1460 -0.7653 32.8385 REMARK 3 T TENSOR REMARK 3 T11: 0.4719 T22: 0.5513 REMARK 3 T33: 0.4362 T12: -0.0630 REMARK 3 T13: -0.0996 T23: -0.0469 REMARK 3 L TENSOR REMARK 3 L11: 1.3230 L22: 1.9966 REMARK 3 L33: 0.8044 L12: -0.8543 REMARK 3 L13: -0.1471 L23: 0.0424 REMARK 3 S TENSOR REMARK 3 S11: 0.0904 S12: 0.0785 S13: -0.1121 REMARK 3 S21: 0.0330 S22: -0.0034 S23: -0.0560 REMARK 3 S31: 0.1281 S32: 0.0798 S33: -0.0839 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UJD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1000244729. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20872 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.936 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.8700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.17 REMARK 200 R MERGE FOR SHELL (I) : 0.54600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.690 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: PDB ENTRY 1LI5-A AS PER MORDA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ANATRACE MCSG-1 SCREEN, CONDITION A3: REMARK 280 10% (W/V) PEG 8000, 200MM SODIUM CHLORIDE, 100MM SODIUM REMARK 280 PHOSPHATE DIBASIC / POTASSIUM PHOSPHATE MONOBASIC PH 6.2: REMARK 280 ELMEA.00133.A.B1.PS385583 AT 8.47 MG/ML: CRYO: 25% EG IN 2 STEPS: REMARK 280 TRAY 310561 A3: PUCK KZN9-2., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 104.45000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.13000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.13000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.22500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.13000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.13000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 156.67500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.13000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.13000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 52.22500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.13000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.13000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 156.67500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 104.45000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -156.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 104.45000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 665 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 678 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 ASP A 77 REMARK 465 GLY A 78 REMARK 465 ASN A 79 REMARK 465 ILE A 80 REMARK 465 GLU A 81 REMARK 465 ASN A 82 REMARK 465 ASP A 83 REMARK 465 ARG A 84 REMARK 465 PHE A 85 REMARK 465 ILE A 86 REMARK 465 LYS A 87 REMARK 465 GLN A 88 REMARK 465 SER A 89 REMARK 465 GLU A 176 REMARK 465 LEU A 177 REMARK 465 PHE A 178 REMARK 465 ALA A 179 REMARK 465 ASN A 180 REMARK 465 THR A 181 REMARK 465 ARG A 182 REMARK 465 ASP A 183 REMARK 465 LEU A 184 REMARK 465 ASP A 185 REMARK 465 GLY A 186 REMARK 465 GLU A 431 REMARK 465 THR A 432 REMARK 465 ASN A 433 REMARK 465 ASN A 434 REMARK 465 ASN A 435 REMARK 465 LYS A 436 REMARK 465 LEU A 437 REMARK 465 ASP A 438 REMARK 465 GLU A 439 REMARK 465 THR A 440 REMARK 465 LEU A 441 REMARK 465 GLN A 442 REMARK 465 LEU A 443 REMARK 465 LEU A 444 REMARK 465 ILE A 445 REMARK 465 GLU A 446 REMARK 465 LEU A 447 REMARK 465 ARG A 448 REMARK 465 ASN A 449 REMARK 465 GLN A 450 REMARK 465 ALA A 451 REMARK 465 ARG A 452 REMARK 465 LYS A 453 REMARK 465 SER A 454 REMARK 465 LYS A 455 REMARK 465 ASN A 456 REMARK 465 TRP A 457 REMARK 465 GLU A 458 REMARK 465 LEU A 459 REMARK 465 SER A 460 REMARK 465 ASP A 461 REMARK 465 GLN A 462 REMARK 465 ILE A 463 REMARK 465 ARG A 464 REMARK 465 ASP A 465 REMARK 465 ARG A 466 REMARK 465 LEU A 467 REMARK 465 LEU A 468 REMARK 465 GLU A 469 REMARK 465 GLN A 470 REMARK 465 GLY A 471 REMARK 465 ILE A 472 REMARK 465 GLU A 473 REMARK 465 LEU A 474 REMARK 465 LYS A 475 REMARK 465 ASP A 476 REMARK 465 GLY A 477 REMARK 465 LYS A 478 REMARK 465 GLU A 479 REMARK 465 GLY A 480 REMARK 465 THR A 481 REMARK 465 SER A 482 REMARK 465 TYR A 483 REMARK 465 THR A 484 REMARK 465 ILE A 485 REMARK 465 ASN A 486 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 12 CG CD OE1 OE2 REMARK 470 LYS A 17 CG CD CE NZ REMARK 470 GLU A 21 CG CD OE1 OE2 REMARK 470 ARG A 90 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 92 CG CD OE1 OE2 REMARK 470 LYS A 93 CG CD CE NZ REMARK 470 ASN A 173 CG OD1 ND2 REMARK 470 ILE A 174 CG1 CG2 CD1 REMARK 470 GLU A 175 CG CD OE1 OE2 REMARK 470 GLN A 187 CG CD OE1 NE2 REMARK 470 GLN A 205 CG CD OE1 NE2 REMARK 470 LYS A 285 CG CD CE NZ REMARK 470 LYS A 348 CG CD CE NZ REMARK 470 GLU A 357 CG CD OE1 OE2 REMARK 470 LYS A 358 CG CD CE NZ REMARK 470 LYS A 401 CG CD CE NZ REMARK 470 GLU A 430 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 33 47.23 -93.05 REMARK 500 HIS A 128 31.74 -142.51 REMARK 500 ASN A 165 78.67 56.65 REMARK 500 ASN A 173 22.73 -142.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 29 SG REMARK 620 2 CYS A 225 SG 132.3 REMARK 620 3 HIS A 250 NE2 113.9 110.5 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG5 A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 507 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: ELMEA.00133.A RELATED DB: TARGETTRACK DBREF1 6UJD A 1 486 UNP A0A1T3F4R2_ELIME DBREF2 6UJD A A0A1T3F4R2 1 486 SEQADV 6UJD MET A -7 UNP A0A1T3F4R INITIATING METHIONINE SEQADV 6UJD ALA A -6 UNP A0A1T3F4R EXPRESSION TAG SEQADV 6UJD HIS A -5 UNP A0A1T3F4R EXPRESSION TAG SEQADV 6UJD HIS A -4 UNP A0A1T3F4R EXPRESSION TAG SEQADV 6UJD HIS A -3 UNP A0A1T3F4R EXPRESSION TAG SEQADV 6UJD HIS A -2 UNP A0A1T3F4R EXPRESSION TAG SEQADV 6UJD HIS A -1 UNP A0A1T3F4R EXPRESSION TAG SEQADV 6UJD HIS A 0 UNP A0A1T3F4R EXPRESSION TAG SEQADV 6UJD ALA A 410 UNP A0A1T3F4R THR 410 VARIANT SEQRES 1 A 494 MET ALA HIS HIS HIS HIS HIS HIS MET GLN LEU LYS ILE SEQRES 2 A 494 TYR ASN SER LEU THR GLY GLU LYS GLU ASP PHE LYS PRO SEQRES 3 A 494 ILE LEU GLU GLY ASN VAL GLY MET TYR VAL CYS GLY PRO SEQRES 4 A 494 THR VAL TYR SER ASN VAL HIS LEU GLY ASN VAL ARG THR SEQRES 5 A 494 PHE LEU SER PHE ASP PHE ILE TYR ARG SER LEU GLN TYR SEQRES 6 A 494 ILE GLY TYR LYS VAL ARG TYR VAL ARG ASN ILE THR ASP SEQRES 7 A 494 ALA GLY HIS LEU THR ASP ASP GLY ASN ILE GLU ASN ASP SEQRES 8 A 494 ARG PHE ILE LYS GLN SER ARG LEU GLU LYS LEU GLU PRO SEQRES 9 A 494 MET GLU ILE VAL GLN LYS TYR THR VAL ASP PHE HIS GLU SEQRES 10 A 494 VAL LEU LYS LYS PHE ASN LEU LEU PRO PRO THR ILE GLU SEQRES 11 A 494 PRO THR ALA THR GLY HIS ILE ILE GLU GLN ILE GLU LEU SEQRES 12 A 494 THR LYS LYS LEU ILE ASP THR GLY PHE ALA TYR GLU SER SEQRES 13 A 494 ASN GLY SER VAL TYR PHE ASP VAL LEU GLU TYR ASN ALA SEQRES 14 A 494 ARG GLY LEU ASN TYR GLY GLU LEU SER ARG ARG ASN ILE SEQRES 15 A 494 GLU GLU LEU PHE ALA ASN THR ARG ASP LEU ASP GLY GLN SEQRES 16 A 494 GLY GLU LYS LYS ASN PRO GLN ASP PHE ALA LEU TRP LYS SEQRES 17 A 494 LYS ALA SER PRO GLN HIS ILE MET ARG TRP ILE SER PRO SEQRES 18 A 494 TRP GLY GLU GLY PHE PRO GLY TRP HIS LEU GLU CYS THR SEQRES 19 A 494 ALA MET SER THR LYS TYR LEU GLY ASP LYS PHE ASP ILE SEQRES 20 A 494 HIS GLY GLY GLY MET ASP LEU LYS PHE PRO HIS HIS GLU SEQRES 21 A 494 CYS GLU ILE ALA GLN GLY LYS ALA CYS ASN GLY THR GLU SEQRES 22 A 494 PRO VAL ASN TYR TRP MET HIS ALA ASN MET LEU THR MET SEQRES 23 A 494 ASN GLY GLN ARG MET SER LYS SER THR GLY ASN TYR ILE SEQRES 24 A 494 LEU PRO MET GLU LEU ILE THR GLY ASN ASN SER PHE PHE SEQRES 25 A 494 GLU LYS ALA PHE HIS PRO SER VAL LEU ARG PHE CYS PHE SEQRES 26 A 494 LEU GLN ALA HIS TYR ARG SER VAL LEU ASP ILE SER ASN SEQRES 27 A 494 ASP ALA MET LEU ALA SER GLU LYS GLY PHE SER ARG LEU SEQRES 28 A 494 MET ASP ALA VAL LYS LEU VAL ASP GLU LEU GLN VAL SER SEQRES 29 A 494 GLU LYS SER THR VAL ASN VAL GLN GLU TRP TYR GLU LYS SEQRES 30 A 494 ALA TYR SER ALA LEU VAL ASP ASP PHE ASN SER PRO ILE SEQRES 31 A 494 LEU ILE SER HIS LEU PHE GLU ALA VAL LYS TRP VAL PHE SEQRES 32 A 494 LEU LEU LYS ASP GLY LYS GLU THR ILE THR ALA ASP ASP SEQRES 33 A 494 LEU ALA PHE LEU LYS GLU LYS LEU ASN ALA PHE VAL PHE SEQRES 34 A 494 ASP VAL LEU GLY LEU GLN THR VAL GLU GLU THR ASN ASN SEQRES 35 A 494 ASN LYS LEU ASP GLU THR LEU GLN LEU LEU ILE GLU LEU SEQRES 36 A 494 ARG ASN GLN ALA ARG LYS SER LYS ASN TRP GLU LEU SER SEQRES 37 A 494 ASP GLN ILE ARG ASP ARG LEU LEU GLU GLN GLY ILE GLU SEQRES 38 A 494 LEU LYS ASP GLY LYS GLU GLY THR SER TYR THR ILE ASN HET ZN A 501 1 HET CL A 502 1 HET CL A 503 1 HET CL A 504 1 HET PO4 A 505 5 HET PG5 A 506 12 HET EDO A 507 4 HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM PO4 PHOSPHATE ION HETNAM PG5 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ZN ZN 2+ FORMUL 3 CL 3(CL 1-) FORMUL 6 PO4 O4 P 3- FORMUL 7 PG5 C8 H18 O4 FORMUL 8 EDO C2 H6 O2 FORMUL 9 HOH *80(H2 O) HELIX 1 AA1 HIS A 38 ILE A 58 1 21 HELIX 2 AA2 GLU A 95 PHE A 114 1 20 HELIX 3 AA3 ALA A 125 GLY A 127 5 3 HELIX 4 AA4 HIS A 128 THR A 142 1 15 HELIX 5 AA5 ASP A 155 ARG A 162 1 8 HELIX 6 AA6 GLY A 220 GLY A 234 1 15 HELIX 7 AA7 ASP A 245 LYS A 247 5 3 HELIX 8 AA8 PRO A 249 GLY A 263 1 15 HELIX 9 AA9 LEU A 292 GLY A 299 1 8 HELIX 10 AB1 HIS A 309 GLN A 319 1 11 HELIX 11 AB2 SER A 329 VAL A 350 1 22 HELIX 12 AB3 ASP A 351 LEU A 353 5 3 HELIX 13 AB4 ASN A 362 VAL A 375 1 14 HELIX 14 AB5 ASN A 379 ASP A 399 1 21 HELIX 15 AB6 THR A 405 ASP A 422 1 18 SHEET 1 AA1 2 LYS A 4 TYR A 6 0 SHEET 2 AA1 2 LYS A 13 ASP A 15 -1 O GLU A 14 N ILE A 5 SHEET 1 AA2 4 LYS A 61 ARG A 66 0 SHEET 2 AA2 4 ASN A 23 VAL A 28 1 N MET A 26 O VAL A 65 SHEET 3 AA2 4 PHE A 237 GLY A 243 1 O GLY A 241 N TYR A 27 SHEET 4 AA2 4 VAL A 267 ALA A 273 1 O TYR A 269 N ASP A 238 SHEET 1 AA3 5 ALA A 145 SER A 148 0 SHEET 2 AA3 5 SER A 151 PHE A 154 -1 O SER A 151 N SER A 148 SHEET 3 AA3 5 PHE A 196 LYS A 201 -1 O PHE A 196 N PHE A 154 SHEET 4 AA3 5 GLY A 215 PRO A 219 -1 O PHE A 218 N LYS A 200 SHEET 5 AA3 5 TRP A 210 SER A 212 -1 N TRP A 210 O GLY A 217 SHEET 1 AA4 3 GLN A 281 ARG A 282 0 SHEET 2 AA4 3 LEU A 276 MET A 278 -1 N MET A 278 O GLN A 281 SHEET 3 AA4 3 LEU A 326 ILE A 328 1 O LEU A 326 N THR A 277 LINK SG CYS A 29 ZN ZN A 501 1555 1555 2.37 LINK SG CYS A 225 ZN ZN A 501 1555 1555 2.36 LINK NE2 HIS A 250 ZN ZN A 501 1555 1555 2.11 CISPEP 1 PHE A 248 PRO A 249 0 0.05 SITE 1 AC1 5 CYS A 29 CYS A 225 HIS A 250 GLU A 254 SITE 2 AC1 5 CL A 504 SITE 1 AC2 1 ALA A 197 SITE 1 AC3 4 ARG A 43 SER A 47 PHE A 317 ALA A 320 SITE 1 AC4 7 CYS A 29 ASN A 67 THR A 69 TRP A 221 SITE 2 AC4 7 CYS A 225 HIS A 250 ZN A 501 SITE 1 AC5 5 LYS A 13 HIS A 321 ARG A 323 ASP A 376 SITE 2 AC5 5 ASN A 379 SITE 1 AC6 1 GLN A 205 SITE 1 AC7 2 ILE A 58 GLY A 59 CRYST1 78.260 78.260 208.900 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012778 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012778 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004787 0.00000