HEADER OXIDOREDUCTASE 03-OCT-19 6UJK TITLE CRYSTAL STRUCTURE OF A PROBABLE SHORT-CHAIN TYPE TITLE 2 DEHYDROGENASE/REDUCTASE (RV1144) FROM MYCOBACTERIUM TUBERCULOSIS WITH TITLE 3 BOUND NAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED OXIDOREDUCTASE RV1144; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MYTUD.00554.A.B1; COMPND 5 EC: 1.-.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: RV1144; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS SSGCID, OXIDOREDUCTASE, DEHYDROGENASE, REDUCTASE, NAD, STRUCTURAL KEYWDS 2 GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 11-OCT-23 6UJK 1 REMARK REVDAT 1 16-OCT-19 6UJK 0 JRNL AUTH D.M.DRANOW,J.ABENDROTH,D.D.LORIMER,P.S.HORANYI,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF A PROBABLE SHORT-CHAIN TYPE JRNL TITL 2 DEHYDROGENASE/REDUCTASE (RV1144) FROM MYCOBACTERIUM JRNL TITL 3 TUBERCULOSIS WITH BOUND NAD JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17RC1_3602 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 141531 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.122 REMARK 3 R VALUE (WORKING SET) : 0.122 REMARK 3 FREE R VALUE : 0.137 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.320 REMARK 3 FREE R VALUE TEST SET COUNT : 1873 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.9600 - 2.8200 1.00 11173 147 0.1391 0.1483 REMARK 3 2 2.8200 - 2.2400 1.00 10841 183 0.1414 0.1544 REMARK 3 3 2.2400 - 1.9600 1.00 10847 119 0.1268 0.1278 REMARK 3 4 1.9600 - 1.7800 1.00 10738 169 0.1243 0.1341 REMARK 3 5 1.7800 - 1.6500 1.00 10777 160 0.1146 0.1300 REMARK 3 6 1.6500 - 1.5500 1.00 10725 153 0.1023 0.1152 REMARK 3 7 1.5500 - 1.4700 1.00 10754 130 0.0933 0.1025 REMARK 3 8 1.4700 - 1.4100 1.00 10741 136 0.0957 0.1131 REMARK 3 9 1.4100 - 1.3600 1.00 10745 125 0.0967 0.1239 REMARK 3 10 1.3600 - 1.3100 1.00 10705 136 0.0956 0.1253 REMARK 3 11 1.3100 - 1.2700 1.00 10716 144 0.0958 0.1360 REMARK 3 12 1.2700 - 1.2300 1.00 10690 117 0.0981 0.1387 REMARK 3 13 1.2300 - 1.2000 0.96 10206 154 0.1033 0.1278 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.070 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 11.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UJK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1000244736. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00003 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 141537 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 29.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.175 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.0100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.12 REMARK 200 R MERGE FOR SHELL (I) : 0.17200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.070 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: 3PYM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MYTUD.00554.A.B1.PW38579 AT 23.33 REMARK 280 MG/ML WAS INCUBATED WITH 5 MM NAD, THEN WAS MIXED 1:1 WITH MCSG1 REMARK 280 (D9): 25% (W/V) PEG-3350, 0.1 M TRIS:HCL, PH = 8.5, 0.2 M NACL, REMARK 280 20% ETHYLENE GLYCOL CRO. TRAY: 307357D9, PUCK: UKH4-4, PH 8.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.81000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.81000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.44000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.03500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.44000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.03500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.81000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.44000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 62.03500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 47.81000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.44000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 62.03500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 417 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 541 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 680 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 584 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 633 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 SER A 196 REMARK 465 LEU A 197 REMARK 465 PRO A 198 REMARK 465 ALA A 199 REMARK 465 GLU A 200 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 SER B 196 REMARK 465 LEU B 197 REMARK 465 PRO B 198 REMARK 465 ALA B 199 REMARK 465 GLU B 200 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 2 CG CD CE NZ REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 ASP A 95 CG OD1 OD2 REMARK 470 THR B 3 OG1 CG2 REMARK 470 LYS B 4 CG CD CE NZ REMARK 470 ASP B 5 CG OD1 OD2 REMARK 470 LYS B 127 CG CD CE NZ REMARK 470 GLN B 207 CG CD OE1 NE2 REMARK 470 GLN B 208 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 426 O HOH A 604 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 644 O HOH B 622 8555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 148 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 3 -58.33 -120.04 REMARK 500 ALA A 142 -127.03 -94.97 REMARK 500 LEU A 178 41.13 71.41 REMARK 500 ASP A 242 10.94 -155.69 REMARK 500 ASP B 5 -20.53 72.63 REMARK 500 ASN B 87 140.06 -173.68 REMARK 500 ALA B 142 -126.75 -96.20 REMARK 500 ASP B 242 10.37 -155.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 119 0.09 SIDE CHAIN REMARK 500 ARG B 119 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MYTUD.00554.A RELATED DB: TARGETTRACK DBREF 6UJK A 1 250 UNP P9WGQ7 Y1144_MYCTU 1 250 DBREF 6UJK B 1 250 UNP P9WGQ7 Y1144_MYCTU 1 250 SEQADV 6UJK MET A -7 UNP P9WGQ7 INITIATING METHIONINE SEQADV 6UJK ALA A -6 UNP P9WGQ7 EXPRESSION TAG SEQADV 6UJK HIS A -5 UNP P9WGQ7 EXPRESSION TAG SEQADV 6UJK HIS A -4 UNP P9WGQ7 EXPRESSION TAG SEQADV 6UJK HIS A -3 UNP P9WGQ7 EXPRESSION TAG SEQADV 6UJK HIS A -2 UNP P9WGQ7 EXPRESSION TAG SEQADV 6UJK HIS A -1 UNP P9WGQ7 EXPRESSION TAG SEQADV 6UJK HIS A 0 UNP P9WGQ7 EXPRESSION TAG SEQADV 6UJK MET B -7 UNP P9WGQ7 INITIATING METHIONINE SEQADV 6UJK ALA B -6 UNP P9WGQ7 EXPRESSION TAG SEQADV 6UJK HIS B -5 UNP P9WGQ7 EXPRESSION TAG SEQADV 6UJK HIS B -4 UNP P9WGQ7 EXPRESSION TAG SEQADV 6UJK HIS B -3 UNP P9WGQ7 EXPRESSION TAG SEQADV 6UJK HIS B -2 UNP P9WGQ7 EXPRESSION TAG SEQADV 6UJK HIS B -1 UNP P9WGQ7 EXPRESSION TAG SEQADV 6UJK HIS B 0 UNP P9WGQ7 EXPRESSION TAG SEQRES 1 A 258 MET ALA HIS HIS HIS HIS HIS HIS MET LYS THR LYS ASP SEQRES 2 A 258 ALA VAL ALA VAL VAL THR GLY GLY ALA SER GLY LEU GLY SEQRES 3 A 258 LEU ALA THR THR LYS ARG LEU LEU ASP ALA GLY ALA GLN SEQRES 4 A 258 VAL VAL VAL VAL ASP LEU ARG GLY ASP ASP VAL VAL GLY SEQRES 5 A 258 GLY LEU GLY ASP ARG ALA ARG PHE ALA GLN ALA ASP VAL SEQRES 6 A 258 THR ASP GLU ALA ALA VAL SER ASN ALA LEU GLU LEU ALA SEQRES 7 A 258 ASP SER LEU GLY PRO VAL ARG VAL VAL VAL ASN CYS ALA SEQRES 8 A 258 GLY THR GLY ASN ALA ILE ARG VAL LEU SER ARG ASP GLY SEQRES 9 A 258 VAL PHE PRO LEU ALA ALA PHE ARG LYS ILE VAL ASP ILE SEQRES 10 A 258 ASN LEU VAL GLY THR PHE ASN VAL LEU ARG LEU GLY ALA SEQRES 11 A 258 GLU ARG ILE ALA LYS THR GLU PRO ILE GLY GLU GLU ARG SEQRES 12 A 258 GLY VAL ILE ILE ASN THR ALA SER VAL ALA ALA PHE ASP SEQRES 13 A 258 GLY GLN ILE GLY GLN ALA ALA TYR SER ALA SER LYS GLY SEQRES 14 A 258 GLY VAL VAL GLY MET THR LEU PRO ILE ALA ARG ASP LEU SEQRES 15 A 258 ALA SER LYS LEU ILE ARG VAL VAL THR ILE ALA PRO GLY SEQRES 16 A 258 LEU PHE ASP THR PRO LEU LEU ALA SER LEU PRO ALA GLU SEQRES 17 A 258 ALA LYS ALA SER LEU GLY GLN GLN VAL PRO HIS PRO SER SEQRES 18 A 258 ARG LEU GLY ASN PRO ASP GLU TYR GLY ALA LEU VAL LEU SEQRES 19 A 258 HIS ILE ILE GLU ASN PRO MET LEU ASN GLY GLU VAL ILE SEQRES 20 A 258 ARG LEU ASP GLY ALA ILE ARG MET ALA PRO ARG SEQRES 1 B 258 MET ALA HIS HIS HIS HIS HIS HIS MET LYS THR LYS ASP SEQRES 2 B 258 ALA VAL ALA VAL VAL THR GLY GLY ALA SER GLY LEU GLY SEQRES 3 B 258 LEU ALA THR THR LYS ARG LEU LEU ASP ALA GLY ALA GLN SEQRES 4 B 258 VAL VAL VAL VAL ASP LEU ARG GLY ASP ASP VAL VAL GLY SEQRES 5 B 258 GLY LEU GLY ASP ARG ALA ARG PHE ALA GLN ALA ASP VAL SEQRES 6 B 258 THR ASP GLU ALA ALA VAL SER ASN ALA LEU GLU LEU ALA SEQRES 7 B 258 ASP SER LEU GLY PRO VAL ARG VAL VAL VAL ASN CYS ALA SEQRES 8 B 258 GLY THR GLY ASN ALA ILE ARG VAL LEU SER ARG ASP GLY SEQRES 9 B 258 VAL PHE PRO LEU ALA ALA PHE ARG LYS ILE VAL ASP ILE SEQRES 10 B 258 ASN LEU VAL GLY THR PHE ASN VAL LEU ARG LEU GLY ALA SEQRES 11 B 258 GLU ARG ILE ALA LYS THR GLU PRO ILE GLY GLU GLU ARG SEQRES 12 B 258 GLY VAL ILE ILE ASN THR ALA SER VAL ALA ALA PHE ASP SEQRES 13 B 258 GLY GLN ILE GLY GLN ALA ALA TYR SER ALA SER LYS GLY SEQRES 14 B 258 GLY VAL VAL GLY MET THR LEU PRO ILE ALA ARG ASP LEU SEQRES 15 B 258 ALA SER LYS LEU ILE ARG VAL VAL THR ILE ALA PRO GLY SEQRES 16 B 258 LEU PHE ASP THR PRO LEU LEU ALA SER LEU PRO ALA GLU SEQRES 17 B 258 ALA LYS ALA SER LEU GLY GLN GLN VAL PRO HIS PRO SER SEQRES 18 B 258 ARG LEU GLY ASN PRO ASP GLU TYR GLY ALA LEU VAL LEU SEQRES 19 B 258 HIS ILE ILE GLU ASN PRO MET LEU ASN GLY GLU VAL ILE SEQRES 20 B 258 ARG LEU ASP GLY ALA ILE ARG MET ALA PRO ARG HET NAD A 301 44 HET EDO A 302 4 HET EDO A 303 8 HET EDO A 304 4 HET TRS A 305 16 HET NAD B 301 44 HET EDO B 302 4 HET EDO B 303 8 HET EDO B 304 4 HET EDO B 305 8 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN EDO ETHYLENE GLYCOL HETSYN TRS TRIS BUFFER FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 EDO 7(C2 H6 O2) FORMUL 7 TRS C4 H12 N O3 1+ FORMUL 13 HOH *519(H2 O) HELIX 1 AA1 SER A 15 ALA A 28 1 14 HELIX 2 AA2 GLY A 39 GLY A 45 1 7 HELIX 3 AA3 ASP A 59 GLY A 74 1 16 HELIX 4 AA4 PRO A 99 LEU A 111 1 13 HELIX 5 AA5 LEU A 111 LYS A 127 1 17 HELIX 6 AA6 VAL A 144 GLY A 149 1 6 HELIX 7 AA7 GLN A 153 ALA A 175 1 23 HELIX 8 AA8 THR A 191 ALA A 195 5 5 HELIX 9 AA9 LYS A 202 GLN A 208 1 7 HELIX 10 AB1 ASN A 217 ASN A 231 1 15 HELIX 11 AB2 SER B 15 ALA B 28 1 14 HELIX 12 AB3 GLY B 39 GLY B 45 1 7 HELIX 13 AB4 ASP B 59 GLY B 74 1 16 HELIX 14 AB5 PRO B 99 LEU B 111 1 13 HELIX 15 AB6 LEU B 111 LYS B 127 1 17 HELIX 16 AB7 VAL B 144 GLY B 149 1 6 HELIX 17 AB8 GLN B 153 ALA B 175 1 23 HELIX 18 AB9 THR B 191 ALA B 195 5 5 HELIX 19 AC1 LYS B 202 GLN B 208 1 7 HELIX 20 AC2 ASN B 217 ASN B 231 1 15 SHEET 1 AA1 7 ALA A 50 GLN A 54 0 SHEET 2 AA1 7 GLN A 31 ASP A 36 1 N VAL A 34 O ARG A 51 SHEET 3 AA1 7 VAL A 7 THR A 11 1 N ALA A 8 O VAL A 33 SHEET 4 AA1 7 VAL A 76 ASN A 81 1 O VAL A 80 N VAL A 9 SHEET 5 AA1 7 GLY A 136 THR A 141 1 O ILE A 139 N ASN A 81 SHEET 6 AA1 7 ILE A 179 PRO A 186 1 O ILE A 184 N ASN A 140 SHEET 7 AA1 7 VAL A 238 LEU A 241 1 O ILE A 239 N ALA A 185 SHEET 1 AA2 2 LEU A 92 SER A 93 0 SHEET 2 AA2 2 GLY A 96 VAL A 97 -1 O GLY A 96 N SER A 93 SHEET 1 AA3 7 ALA B 50 GLN B 54 0 SHEET 2 AA3 7 GLN B 31 ASP B 36 1 N VAL B 34 O ARG B 51 SHEET 3 AA3 7 VAL B 7 THR B 11 1 N ALA B 8 O GLN B 31 SHEET 4 AA3 7 VAL B 76 ASN B 81 1 O VAL B 80 N VAL B 9 SHEET 5 AA3 7 GLY B 136 THR B 141 1 O ILE B 139 N VAL B 79 SHEET 6 AA3 7 ILE B 179 PRO B 186 1 O ILE B 184 N ASN B 140 SHEET 7 AA3 7 VAL B 238 LEU B 241 1 O ILE B 239 N ALA B 185 SHEET 1 AA4 2 LEU B 92 SER B 93 0 SHEET 2 AA4 2 GLY B 96 VAL B 97 -1 O GLY B 96 N SER B 93 CISPEP 1 HIS A 211 PRO A 212 0 0.01 CISPEP 2 HIS A 211 PRO A 212 0 -1.69 CISPEP 3 HIS B 211 PRO B 212 0 0.10 CISPEP 4 HIS B 211 PRO B 212 0 -0.64 SITE 1 AC1 31 GLY A 12 SER A 15 GLY A 16 LEU A 17 SITE 2 AC1 31 ASP A 36 LEU A 37 ALA A 55 ASP A 56 SITE 3 AC1 31 VAL A 57 CYS A 82 ALA A 83 GLY A 84 SITE 4 AC1 31 THR A 141 ALA A 142 SER A 143 TYR A 156 SITE 5 AC1 31 LYS A 160 PRO A 186 GLY A 187 PHE A 189 SITE 6 AC1 31 THR A 191 PRO A 192 LEU A 193 HOH A 432 SITE 7 AC1 31 HOH A 453 HOH A 455 HOH A 480 HOH A 485 SITE 8 AC1 31 HOH A 486 HOH A 522 HOH A 525 SITE 1 AC2 3 ARG A 104 ASP A 108 HOH A 567 SITE 1 AC3 7 GLN A 150 ILE A 245 ARG A 246 MET A 247 SITE 2 AC3 7 ALA A 248 HOH A 434 HOH A 495 SITE 1 AC4 3 ASP A 5 ALA B 88 ARG B 90 SITE 1 AC5 13 PHE A 147 GLU A 237 VAL A 238 HOH A 403 SITE 2 AC5 13 HOH A 423 HOH A 476 HOH A 504 HOH A 505 SITE 3 AC5 13 HOH A 506 HOH A 532 PHE B 147 GLU B 237 SITE 4 AC5 13 VAL B 238 SITE 1 AC6 31 GLY B 12 SER B 15 GLY B 16 LEU B 17 SITE 2 AC6 31 ASP B 36 LEU B 37 ALA B 55 ASP B 56 SITE 3 AC6 31 VAL B 57 CYS B 82 ALA B 83 GLY B 84 SITE 4 AC6 31 THR B 141 ALA B 142 SER B 143 TYR B 156 SITE 5 AC6 31 LYS B 160 PRO B 186 GLY B 187 PHE B 189 SITE 6 AC6 31 THR B 191 PRO B 192 LEU B 193 HOH B 412 SITE 7 AC6 31 HOH B 430 HOH B 445 HOH B 468 HOH B 497 SITE 8 AC6 31 HOH B 504 HOH B 511 HOH B 525 SITE 1 AC7 8 ILE B 89 ASP B 95 GLY B 96 VAL B 97 SITE 2 AC7 8 PRO B 99 HOH B 472 HOH B 507 HOH B 544 SITE 1 AC8 6 ILE B 245 ARG B 246 MET B 247 ALA B 248 SITE 2 AC8 6 HOH B 469 HOH B 517 SITE 1 AC9 3 ARG B 104 ASP B 108 HOH B 531 SITE 1 AD1 4 ARG B 77 GLU B 134 GLY B 136 VAL B 137 CRYST1 76.880 124.070 95.620 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013007 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008060 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010458 0.00000