HEADER IMMUNE SYSTEM 04-OCT-19 6UK2 TITLE COMPLEX OF T CELL RECEPTOR WITH HHAT WILD TYPE PEPTIDE KQWLVWLLL TITLE 2 PRESENTED BY HLA-A206 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MHC CLASS I ANTIGEN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 25-299; COMPND 5 SYNONYM: HLA-A*02:06; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 21-119; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: PROTEIN-CYSTEINE N-PALMITOYLTRANSFERASE HHAT; COMPND 14 CHAIN: C; COMPND 15 FRAGMENT: NEOANTIGEN PEPTIDE (UNP RESIDUES 68-76); COMPND 16 SYNONYM: HEDGEHOG ACYLTRANSFERASE,MELANOMA ANTIGEN RECOGNIZED BY T- COMPND 17 CELLS 2,MART-2,SKINNY HEDGEHOG PROTEIN 1; COMPND 18 EC: 2.3.1.-; COMPND 19 ENGINEERED: YES; COMPND 20 MOL_ID: 4; COMPND 21 MOLECULE: 302 TIL T CELL RECEPTOR ALPHA CHAIN; COMPND 22 CHAIN: D; COMPND 23 ENGINEERED: YES; COMPND 24 MOL_ID: 5; COMPND 25 MOLECULE: 302 TIL T CELL RECEPTOR BETA CHAIN; COMPND 26 CHAIN: E; COMPND 27 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: XL1 BLUE; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: XL1 BLUE; SOURCE 17 MOL_ID: 3; SOURCE 18 SYNTHETIC: YES; SOURCE 19 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 20 ORGANISM_COMMON: HUMAN; SOURCE 21 ORGANISM_TAXID: 9606; SOURCE 22 MOL_ID: 4; SOURCE 23 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 24 ORGANISM_COMMON: HUMAN; SOURCE 25 ORGANISM_TAXID: 9606; SOURCE 26 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 27 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 28 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2 DE3; SOURCE 29 MOL_ID: 5; SOURCE 30 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 31 ORGANISM_COMMON: HUMAN; SOURCE 32 ORGANISM_TAXID: 9606; SOURCE 33 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 34 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 35 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2 DE3 KEYWDS NEOANTIGEN, PEPTIDE/MHC, IMMUNE SYSTEM, T CELL RECEPTOR EXPDTA X-RAY DIFFRACTION AUTHOR J.R.DEVLIN,B.M.BAKER REVDAT 5 11-OCT-23 6UK2 1 REMARK REVDAT 4 28-OCT-20 6UK2 1 JRNL REVDAT 3 02-SEP-20 6UK2 1 JRNL REVDAT 2 26-AUG-20 6UK2 1 JRNL REVDAT 1 19-AUG-20 6UK2 0 JRNL AUTH J.R.DEVLIN,J.A.ALONSO,C.M.AYRES,G.L.J.KELLER,S.BOBISSE, JRNL AUTH 2 C.W.VANDER KOOI,G.COUKOS,D.GFELLER,A.HARARI,B.M.BAKER JRNL TITL STRUCTURAL DISSIMILARITY FROM SELF DRIVES NEOEPITOPE ESCAPE JRNL TITL 2 FROM IMMUNE TOLERANCE. JRNL REF NAT.CHEM.BIOL. V. 16 1269 2020 JRNL REFN ESSN 1552-4469 JRNL PMID 32807968 JRNL DOI 10.1038/S41589-020-0610-1 REMARK 2 REMARK 2 RESOLUTION. 3.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 22713 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.392 REMARK 3 FREE R VALUE TEST SET COUNT : 1906 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.2975 - 7.5516 0.99 1710 156 0.1870 0.1897 REMARK 3 2 7.5516 - 5.9994 1.00 1615 149 0.2203 0.2491 REMARK 3 3 5.9994 - 5.2426 1.00 1607 149 0.2030 0.2506 REMARK 3 4 5.2426 - 4.7640 0.98 1553 141 0.1972 0.2408 REMARK 3 5 4.7640 - 4.4229 0.99 1574 144 0.1905 0.2362 REMARK 3 6 4.4229 - 4.1624 0.99 1553 144 0.2164 0.2374 REMARK 3 7 4.1624 - 3.9541 0.98 1529 141 0.2442 0.2917 REMARK 3 8 3.9541 - 3.7821 0.96 1504 137 0.2690 0.3002 REMARK 3 9 3.7821 - 3.6366 0.84 1320 118 0.3095 0.3597 REMARK 3 10 3.6366 - 3.5112 0.86 1334 125 0.2872 0.3347 REMARK 3 11 3.5112 - 3.4014 0.92 1419 126 0.3035 0.3514 REMARK 3 12 3.4014 - 3.3042 0.91 1411 133 0.3107 0.3473 REMARK 3 13 3.3042 - 3.2173 0.89 1356 123 0.3656 0.3500 REMARK 3 14 3.2173 - 3.1388 0.84 1322 120 0.3919 0.4768 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.481 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.787 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 95.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 96.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 6910 REMARK 3 ANGLE : 0.845 9390 REMARK 3 CHIRALITY : 0.063 982 REMARK 3 PLANARITY : 0.004 1227 REMARK 3 DIHEDRAL : 21.265 2549 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0406 8.3107 -36.6618 REMARK 3 T TENSOR REMARK 3 T11: 0.7421 T22: 0.4789 REMARK 3 T33: 0.7638 T12: 0.0436 REMARK 3 T13: -0.0763 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 3.0942 L22: 3.7153 REMARK 3 L33: 5.1155 L12: -0.6009 REMARK 3 L13: -0.9357 L23: 0.0444 REMARK 3 S TENSOR REMARK 3 S11: -0.0187 S12: -0.1312 S13: 0.2350 REMARK 3 S21: -0.0891 S22: 0.1384 S23: -0.1940 REMARK 3 S31: -0.4477 S32: 0.1523 S33: -0.1020 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 181 THROUGH 275 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.5118 35.4157 -55.8403 REMARK 3 T TENSOR REMARK 3 T11: 0.8137 T22: 0.4948 REMARK 3 T33: 0.5692 T12: -0.0124 REMARK 3 T13: 0.0356 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 6.2122 L22: 5.6048 REMARK 3 L33: 5.0437 L12: 0.5964 REMARK 3 L13: -0.1149 L23: -2.3729 REMARK 3 S TENSOR REMARK 3 S11: 0.2841 S12: -0.2615 S13: 0.5176 REMARK 3 S21: 0.5328 S22: -0.1653 S23: 0.4114 REMARK 3 S31: -0.3103 S32: -0.1493 S33: -0.1306 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.8173 21.7714 -41.8968 REMARK 3 T TENSOR REMARK 3 T11: 0.8616 T22: 0.7280 REMARK 3 T33: 0.7958 T12: 0.0931 REMARK 3 T13: 0.1286 T23: 0.0824 REMARK 3 L TENSOR REMARK 3 L11: 8.1912 L22: 3.6748 REMARK 3 L33: 5.7248 L12: -0.1630 REMARK 3 L13: 3.3275 L23: -0.3526 REMARK 3 S TENSOR REMARK 3 S11: -0.1258 S12: -0.1950 S13: 0.0366 REMARK 3 S21: 0.3600 S22: 0.1027 S23: 0.4196 REMARK 3 S31: -0.0025 S32: -0.7444 S33: 0.0722 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 3 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.4923 69.3100 -34.7087 REMARK 3 T TENSOR REMARK 3 T11: 0.5701 T22: 0.6332 REMARK 3 T33: 0.6646 T12: 0.0316 REMARK 3 T13: 0.1323 T23: 0.0220 REMARK 3 L TENSOR REMARK 3 L11: 9.0401 L22: 4.0782 REMARK 3 L33: 7.4718 L12: -3.6355 REMARK 3 L13: 1.7295 L23: -0.9640 REMARK 3 S TENSOR REMARK 3 S11: 0.3312 S12: 0.4388 S13: 0.2484 REMARK 3 S21: -0.7708 S22: -0.4551 S23: -0.3597 REMARK 3 S31: 0.0917 S32: 0.9881 S33: 0.1309 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 115 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.6697 42.6095 -19.1084 REMARK 3 T TENSOR REMARK 3 T11: 0.8567 T22: 1.0730 REMARK 3 T33: 0.9502 T12: 0.3487 REMARK 3 T13: -0.0074 T23: -0.1398 REMARK 3 L TENSOR REMARK 3 L11: 1.8550 L22: 3.5791 REMARK 3 L33: 5.6145 L12: 0.3518 REMARK 3 L13: 0.0426 L23: -0.5341 REMARK 3 S TENSOR REMARK 3 S11: 0.1446 S12: 0.4029 S13: -0.4706 REMARK 3 S21: -0.3931 S22: -0.4527 S23: 0.3291 REMARK 3 S31: 0.7745 S32: 0.9732 S33: 0.2858 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 2 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -58.9725 69.1599 -16.4128 REMARK 3 T TENSOR REMARK 3 T11: 0.4419 T22: 0.6019 REMARK 3 T33: 0.5893 T12: -0.0205 REMARK 3 T13: 0.0222 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 6.4833 L22: 8.9768 REMARK 3 L33: 8.7379 L12: -0.3330 REMARK 3 L13: 1.4581 L23: -3.2639 REMARK 3 S TENSOR REMARK 3 S11: -0.1073 S12: -0.3868 S13: -0.2127 REMARK 3 S21: 0.1154 S22: 0.1186 S23: 0.3145 REMARK 3 S31: -0.0691 S32: -0.4124 S33: -0.0094 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 116 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.8689 50.0589 -5.9536 REMARK 3 T TENSOR REMARK 3 T11: 0.6540 T22: 0.5760 REMARK 3 T33: 0.5577 T12: 0.1370 REMARK 3 T13: -0.0294 T23: 0.0918 REMARK 3 L TENSOR REMARK 3 L11: 9.3362 L22: 3.5220 REMARK 3 L33: 3.0608 L12: 2.0192 REMARK 3 L13: 0.9895 L23: -0.0756 REMARK 3 S TENSOR REMARK 3 S11: 0.3523 S12: -0.0352 S13: -0.5932 REMARK 3 S21: 0.2719 S22: -0.0767 S23: 0.1615 REMARK 3 S31: 0.2643 S32: 0.1612 S33: -0.2759 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2445 2.4703 -32.6397 REMARK 3 T TENSOR REMARK 3 T11: 1.2611 T22: 0.4875 REMARK 3 T33: 1.1457 T12: -0.1535 REMARK 3 T13: -0.0951 T23: 0.1212 REMARK 3 L TENSOR REMARK 3 L11: 2.3168 L22: 1.4752 REMARK 3 L33: 4.3070 L12: 0.3821 REMARK 3 L13: -0.8525 L23: 2.2634 REMARK 3 S TENSOR REMARK 3 S11: 0.1855 S12: -0.2151 S13: 0.4228 REMARK 3 S21: 0.2190 S22: 0.3729 S23: -0.0964 REMARK 3 S31: -1.4964 S32: 0.5636 S33: -0.4628 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UK2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1000244756. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23820 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.130 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.27900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 2.13500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 1TVH, 5JZI, & 5C0B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE, PH 6.3, 8.5% REMARK 280 PEG6000, 0.20 M LITHIUM NITRATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.17850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 120.36400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.96600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 120.36400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.17850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.96600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 PRO D 205 REMARK 465 GLU D 206 REMARK 465 SER D 207 REMARK 465 SER D 208 REMARK 465 MET E 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP D 133 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 -125.12 51.18 REMARK 500 PRO B 32 -171.68 -69.50 REMARK 500 ALA D 73 -0.56 73.01 REMARK 500 ASP D 97 -155.66 -125.93 REMARK 500 ASN D 118 68.33 64.57 REMARK 500 MET E 40 -128.49 52.09 REMARK 500 LEU E 47 -71.63 -98.96 REMARK 500 ARG E 65 -6.56 91.56 REMARK 500 THR E 98 -66.54 -148.28 REMARK 500 PRO E 153 -165.32 -77.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6UJQ RELATED DB: PDB REMARK 900 SELF-PEPTIDE VARIANT PRESENTED BY HLA-A206 REMARK 900 RELATED ID: 6UJO RELATED DB: PDB REMARK 900 NEOANTIGEN VARIANT PRESENTED BY HLA-A206 REMARK 900 RELATED ID: 6UK4 RELATED DB: PDB REMARK 900 NEOANTIGEN VARIANT PRESENTED BY HLA-A206 AND BOUND BY THE TCR DBREF 6UK2 A 1 275 UNP U5YJP1 U5YJP1_HUMAN 25 299 DBREF 6UK2 B 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 6UK2 C 1 9 UNP Q5VTY9 HHAT_HUMAN 68 76 DBREF 6UK2 D 1 208 PDB 6UK2 6UK2 1 208 DBREF 6UK2 E 1 245 PDB 6UK2 6UK2 1 245 SEQADV 6UK2 MET A 0 UNP U5YJP1 INITIATING METHIONINE SEQADV 6UK2 MET B 0 UNP P61769 INITIATING METHIONINE SEQRES 1 A 276 MET GLY SER HIS SER MET ARG TYR PHE TYR THR SER VAL SEQRES 2 A 276 SER ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE ALA VAL SEQRES 3 A 276 GLY TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER SEQRES 4 A 276 ASP ALA ALA SER GLN ARG MET GLU PRO ARG ALA PRO TRP SEQRES 5 A 276 ILE GLU GLN GLU GLY PRO GLU TYR TRP ASP GLY GLU THR SEQRES 6 A 276 ARG LYS VAL LYS ALA HIS SER GLN THR HIS ARG VAL ASP SEQRES 7 A 276 LEU GLY THR LEU ARG GLY TYR TYR ASN GLN SER GLU ALA SEQRES 8 A 276 GLY SER HIS THR VAL GLN ARG MET TYR GLY CYS ASP VAL SEQRES 9 A 276 GLY SER ASP TRP ARG PHE LEU ARG GLY TYR HIS GLN TYR SEQRES 10 A 276 ALA TYR ASP GLY LYS ASP TYR ILE ALA LEU LYS GLU ASP SEQRES 11 A 276 LEU ARG SER TRP THR ALA ALA ASP MET ALA ALA GLN THR SEQRES 12 A 276 THR LYS HIS LYS TRP GLU ALA ALA HIS VAL ALA GLU GLN SEQRES 13 A 276 LEU ARG ALA TYR LEU GLU GLY THR CYS VAL GLU TRP LEU SEQRES 14 A 276 ARG ARG TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG SEQRES 15 A 276 THR ASP ALA PRO LYS THR HIS MET THR HIS HIS ALA VAL SEQRES 16 A 276 SER ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU SER SEQRES 17 A 276 PHE TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP SEQRES 18 A 276 GLY GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR SEQRES 19 A 276 ARG PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA ALA SEQRES 20 A 276 VAL VAL VAL PRO SER GLY GLN GLU GLN ARG TYR THR CYS SEQRES 21 A 276 HIS VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU SEQRES 22 A 276 ARG TRP GLU SEQRES 1 B 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 B 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 B 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 B 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 B 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 B 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 B 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 B 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 C 9 LYS GLN TRP LEU VAL TRP LEU LEU LEU SEQRES 1 D 208 MET ALA GLN THR VAL THR GLN SER GLN PRO GLU MET SER SEQRES 2 D 208 VAL GLN GLU ALA GLU THR VAL THR LEU SER CYS THR TYR SEQRES 3 D 208 ASP THR SER GLU SER ASP TYR TYR LEU PHE TRP TYR LYS SEQRES 4 D 208 GLN PRO PRO SER ARG GLN MET ILE LEU VAL ILE ARG GLN SEQRES 5 D 208 GLU ALA TYR LYS GLN GLN ASN ALA THR GLU ASN ARG PHE SEQRES 6 D 208 SER VAL ASN PHE GLN LYS ALA ALA LYS SER PHE SER LEU SEQRES 7 D 208 LYS ILE SER ASP SER GLN LEU GLY ASP ALA ALA MET TYR SEQRES 8 D 208 PHE CYS ALA PHE MET ASP SER ASN TYR GLN LEU ILE TRP SEQRES 9 D 208 GLY ALA GLY THR LYS LEU ILE ILE LYS PRO ASN ILE GLN SEQRES 10 D 208 ASN PRO ASP PRO ALA VAL TYR GLN LEU ARG ASP SER LYS SEQRES 11 D 208 SER SER ASP LYS SER VAL CYS LEU PHE THR ASP PHE ASP SEQRES 12 D 208 SER GLN THR ASN VAL SER GLN SER LYS ASP SER ASP VAL SEQRES 13 D 208 TYR ILE THR ASP LYS CYS VAL LEU ASP MET ARG SER MET SEQRES 14 D 208 ASP PHE LYS SER ASN SER ALA VAL ALA TRP SER ASN LYS SEQRES 15 D 208 SER ASP PHE ALA CYS ALA ASN ALA PHE ASN ASN SER ILE SEQRES 16 D 208 ILE PRO GLU ASP THR PHE PHE PRO SER PRO GLU SER SER SEQRES 1 E 245 MET ASP ALA GLY VAL ILE GLN SER PRO ARG HIS GLU VAL SEQRES 2 E 245 THR GLU MET GLY GLN GLU VAL THR LEU ARG CYS LYS PRO SEQRES 3 E 245 ILE SER GLY HIS ASN SER LEU PHE TRP TYR ARG GLN THR SEQRES 4 E 245 MET MET ARG GLY LEU GLU LEU LEU ILE TYR PHE ASN ASN SEQRES 5 E 245 ASN VAL PRO ILE ASP ASP SER GLY MET PRO GLU ASP ARG SEQRES 6 E 245 PHE SER ALA LYS MET PRO ASN ALA SER PHE SER THR LEU SEQRES 7 E 245 LYS ILE GLN PRO SER GLU PRO ARG ASP SER ALA VAL TYR SEQRES 8 E 245 PHE CYS ALA SER SER ARG THR SER PRO THR ASP THR GLN SEQRES 9 E 245 TYR PHE GLY PRO GLY THR ARG LEU THR VAL LEU GLU ASP SEQRES 10 E 245 LEU LYS ASN VAL PHE PRO PRO GLU VAL ALA VAL PHE GLU SEQRES 11 E 245 PRO SER GLU ALA GLU ILE SER HIS THR GLN LYS ALA THR SEQRES 12 E 245 LEU VAL CYS LEU ALA THR GLY PHE TYR PRO ASP HIS VAL SEQRES 13 E 245 GLU LEU SER TRP TRP VAL ASN GLY LYS GLU VAL HIS SER SEQRES 14 E 245 GLY VAL CYS THR ASP PRO GLN PRO LEU LYS GLU GLN PRO SEQRES 15 E 245 ALA LEU ASN ASP SER ARG TYR ALA LEU SER SER ARG LEU SEQRES 16 E 245 ARG VAL SER ALA THR PHE TRP GLN ASP PRO ARG ASN HIS SEQRES 17 E 245 PHE ARG CYS GLN VAL GLN PHE TYR GLY LEU SER GLU ASN SEQRES 18 E 245 ASP GLU TRP THR GLN ASP ARG ALA LYS PRO VAL THR GLN SEQRES 19 E 245 ILE VAL SER ALA GLU ALA TRP GLY ARG ALA ASP HELIX 1 AA1 GLY A 56 TYR A 85 1 30 HELIX 2 AA2 ASP A 137 ALA A 150 1 14 HELIX 3 AA3 HIS A 151 GLU A 161 1 11 HELIX 4 AA4 GLY A 162 GLY A 175 1 14 HELIX 5 AA5 GLY A 175 GLN A 180 1 6 HELIX 6 AA6 GLN A 253 GLN A 255 5 3 HELIX 7 AA7 GLN D 84 ALA D 88 5 5 HELIX 8 AA8 ALA D 186 ALA D 190 5 5 HELIX 9 AA9 GLU E 84 SER E 88 5 5 HELIX 10 AB1 ASP E 117 VAL E 121 5 5 HELIX 11 AB2 SER E 132 GLN E 140 1 9 HELIX 12 AB3 ALA E 199 GLN E 203 1 5 SHEET 1 AA1 8 GLU A 46 PRO A 47 0 SHEET 2 AA1 8 THR A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 AA1 8 ARG A 21 VAL A 28 -1 N VAL A 28 O THR A 31 SHEET 4 AA1 8 HIS A 3 VAL A 12 -1 N PHE A 8 O VAL A 25 SHEET 5 AA1 8 THR A 94 VAL A 103 -1 O VAL A 95 N SER A 11 SHEET 6 AA1 8 PHE A 109 TYR A 118 -1 O ALA A 117 N GLN A 96 SHEET 7 AA1 8 LYS A 121 LEU A 126 -1 O ILE A 124 N TYR A 116 SHEET 8 AA1 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 AA2 4 LYS A 186 SER A 195 0 SHEET 2 AA2 4 GLU A 198 PHE A 208 -1 O ARG A 202 N THR A 190 SHEET 3 AA2 4 PHE A 241 VAL A 249 -1 O VAL A 247 N LEU A 201 SHEET 4 AA2 4 THR A 228 LEU A 230 -1 N GLU A 229 O ALA A 246 SHEET 1 AA3 4 LYS A 186 SER A 195 0 SHEET 2 AA3 4 GLU A 198 PHE A 208 -1 O ARG A 202 N THR A 190 SHEET 3 AA3 4 PHE A 241 VAL A 249 -1 O VAL A 247 N LEU A 201 SHEET 4 AA3 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 AA4 4 GLU A 222 ASP A 223 0 SHEET 2 AA4 4 ILE A 213 ARG A 219 -1 N ARG A 219 O GLU A 222 SHEET 3 AA4 4 TYR A 257 HIS A 263 -1 O GLN A 262 N THR A 214 SHEET 4 AA4 4 LEU A 270 LEU A 272 -1 O LEU A 272 N CYS A 259 SHEET 1 AA5 4 LYS B 6 SER B 11 0 SHEET 2 AA5 4 ASN B 21 PHE B 30 -1 O TYR B 26 N GLN B 8 SHEET 3 AA5 4 PHE B 62 PHE B 70 -1 O PHE B 70 N ASN B 21 SHEET 4 AA5 4 GLU B 50 HIS B 51 -1 N GLU B 50 O TYR B 67 SHEET 1 AA6 4 LYS B 6 SER B 11 0 SHEET 2 AA6 4 ASN B 21 PHE B 30 -1 O TYR B 26 N GLN B 8 SHEET 3 AA6 4 PHE B 62 PHE B 70 -1 O PHE B 70 N ASN B 21 SHEET 4 AA6 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 AA7 4 GLU B 44 ARG B 45 0 SHEET 2 AA7 4 GLU B 36 LYS B 41 -1 N LYS B 41 O GLU B 44 SHEET 3 AA7 4 TYR B 78 ASN B 83 -1 O ARG B 81 N ASP B 38 SHEET 4 AA7 4 LYS B 91 LYS B 94 -1 O LYS B 91 N VAL B 82 SHEET 1 AA8 2 THR D 4 THR D 6 0 SHEET 2 AA8 2 THR D 25 ASP D 27 -1 O THR D 25 N THR D 6 SHEET 1 AA9 5 GLU D 11 GLN D 15 0 SHEET 2 AA9 5 THR D 108 LYS D 113 1 O LYS D 109 N MET D 12 SHEET 3 AA9 5 MET D 90 MET D 96 -1 N TYR D 91 O THR D 108 SHEET 4 AA9 5 TYR D 34 GLN D 40 -1 N TYR D 34 O MET D 96 SHEET 5 AA9 5 ILE D 47 GLU D 53 -1 O VAL D 49 N TRP D 37 SHEET 1 AB1 4 GLU D 11 GLN D 15 0 SHEET 2 AB1 4 THR D 108 LYS D 113 1 O LYS D 109 N MET D 12 SHEET 3 AB1 4 MET D 90 MET D 96 -1 N TYR D 91 O THR D 108 SHEET 4 AB1 4 ILE D 103 TRP D 104 -1 O ILE D 103 N PHE D 95 SHEET 1 AB2 3 VAL D 20 LEU D 22 0 SHEET 2 AB2 3 SER D 75 ILE D 80 -1 O ILE D 80 N VAL D 20 SHEET 3 AB2 3 PHE D 65 GLN D 70 -1 N GLN D 70 O SER D 75 SHEET 1 AB3 4 ALA D 122 ARG D 127 0 SHEET 2 AB3 4 SER D 135 THR D 140 -1 O VAL D 136 N LEU D 126 SHEET 3 AB3 4 PHE D 171 TRP D 179 -1 O ALA D 178 N CYS D 137 SHEET 4 AB3 4 TYR D 157 ILE D 158 -1 N TYR D 157 O TRP D 179 SHEET 1 AB4 4 ALA D 122 ARG D 127 0 SHEET 2 AB4 4 SER D 135 THR D 140 -1 O VAL D 136 N LEU D 126 SHEET 3 AB4 4 PHE D 171 TRP D 179 -1 O ALA D 178 N CYS D 137 SHEET 4 AB4 4 CYS D 162 MET D 166 -1 N MET D 166 O PHE D 171 SHEET 1 AB5 4 ILE E 6 SER E 8 0 SHEET 2 AB5 4 VAL E 20 LYS E 25 -1 O ARG E 23 N SER E 8 SHEET 3 AB5 4 SER E 76 ILE E 80 -1 O ILE E 80 N VAL E 20 SHEET 4 AB5 4 PHE E 66 LYS E 69 -1 N LYS E 69 O THR E 77 SHEET 1 AB6 6 HIS E 11 GLU E 15 0 SHEET 2 AB6 6 THR E 110 LEU E 115 1 O THR E 113 N GLU E 12 SHEET 3 AB6 6 VAL E 90 SER E 96 -1 N TYR E 91 O THR E 110 SHEET 4 AB6 6 SER E 32 GLN E 38 -1 N GLN E 38 O VAL E 90 SHEET 5 AB6 6 LEU E 44 ASN E 51 -1 O PHE E 50 N LEU E 33 SHEET 6 AB6 6 VAL E 54 ASP E 57 -1 O ASP E 57 N TYR E 49 SHEET 1 AB7 4 HIS E 11 GLU E 15 0 SHEET 2 AB7 4 THR E 110 LEU E 115 1 O THR E 113 N GLU E 12 SHEET 3 AB7 4 VAL E 90 SER E 96 -1 N TYR E 91 O THR E 110 SHEET 4 AB7 4 TYR E 105 PHE E 106 -1 O TYR E 105 N SER E 95 SHEET 1 AB8 4 GLU E 125 PHE E 129 0 SHEET 2 AB8 4 LYS E 141 PHE E 151 -1 O THR E 149 N GLU E 125 SHEET 3 AB8 4 TYR E 189 SER E 198 -1 O TYR E 189 N PHE E 151 SHEET 4 AB8 4 VAL E 171 THR E 173 -1 N CYS E 172 O ARG E 194 SHEET 1 AB9 4 GLU E 125 PHE E 129 0 SHEET 2 AB9 4 LYS E 141 PHE E 151 -1 O THR E 149 N GLU E 125 SHEET 3 AB9 4 TYR E 189 SER E 198 -1 O TYR E 189 N PHE E 151 SHEET 4 AB9 4 LEU E 178 LYS E 179 -1 N LEU E 178 O ALA E 190 SHEET 1 AC1 4 LYS E 165 VAL E 167 0 SHEET 2 AC1 4 VAL E 156 VAL E 162 -1 N TRP E 160 O VAL E 167 SHEET 3 AC1 4 HIS E 208 PHE E 215 -1 O GLN E 212 N SER E 159 SHEET 4 AC1 4 GLN E 234 TRP E 241 -1 O ALA E 238 N CYS E 211 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.04 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.03 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.03 SSBOND 4 CYS D 24 CYS D 93 1555 1555 2.03 SSBOND 5 CYS D 137 CYS D 187 1555 1555 2.04 SSBOND 6 CYS D 162 CYS E 172 1555 1555 2.03 SSBOND 7 CYS E 24 CYS E 93 1555 1555 2.03 SSBOND 8 CYS E 146 CYS E 211 1555 1555 2.03 CISPEP 1 TYR A 209 PRO A 210 0 -1.92 CISPEP 2 HIS B 31 PRO B 32 0 1.70 CISPEP 3 SER E 8 PRO E 9 0 -2.74 CISPEP 4 GLN E 81 PRO E 82 0 -3.38 CISPEP 5 TYR E 152 PRO E 153 0 -1.84 CRYST1 64.357 85.932 240.728 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015538 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011637 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004154 0.00000