HEADER IMMUNE SYSTEM 04-OCT-19 6UK4 TITLE COMPLEX OF T CELL RECEPTOR WITH HHAT NEOANTIGEN PEPTIDE KQWLVWLFL TITLE 2 PRESENTED BY HLA-A206 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MHC CLASS I ANTIGEN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 25-299; COMPND 5 SYNONYM: HLA-A*02:06; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UNP RESIDUES 21-119; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: PROTEIN-CYSTEINE N-PALMITOYLTRANSFERASE HHAT; COMPND 14 CHAIN: C; COMPND 15 FRAGMENT: NEOANTIGEN PEPTIDE (UNP RESIDUES 68-76); COMPND 16 EC: 2.3.1.-; COMPND 17 ENGINEERED: YES; COMPND 18 MUTATION: YES; COMPND 19 MOL_ID: 4; COMPND 20 MOLECULE: 302 TIL T CELL RECEPTOR ALPHA CHAIN; COMPND 21 CHAIN: D; COMPND 22 ENGINEERED: YES; COMPND 23 MOL_ID: 5; COMPND 24 MOLECULE: 302 TIL T CELL RECEPTOR BETA CHAIN; COMPND 25 CHAIN: E; COMPND 26 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: XL1 BLUE; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: XL1 BLUE; SOURCE 17 MOL_ID: 3; SOURCE 18 SYNTHETIC: YES; SOURCE 19 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 20 ORGANISM_COMMON: HUMAN; SOURCE 21 ORGANISM_TAXID: 9606; SOURCE 22 MOL_ID: 4; SOURCE 23 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 24 ORGANISM_COMMON: HUMAN; SOURCE 25 ORGANISM_TAXID: 9606; SOURCE 26 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 27 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 28 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2 DE3; SOURCE 29 MOL_ID: 5; SOURCE 30 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 31 ORGANISM_COMMON: HUMAN; SOURCE 32 ORGANISM_TAXID: 9606; SOURCE 33 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 34 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 35 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2 DE3 KEYWDS NEOANTIGEN, PEPTIDE/MHC, IMMUNE SYSTEM, T CELL RECEPTOR EXPDTA X-RAY DIFFRACTION AUTHOR J.R.DEVLIN,B.M.BAKER REVDAT 5 11-OCT-23 6UK4 1 REMARK REVDAT 4 28-OCT-20 6UK4 1 JRNL REVDAT 3 02-SEP-20 6UK4 1 JRNL REVDAT 2 26-AUG-20 6UK4 1 JRNL REVDAT 1 19-AUG-20 6UK4 0 JRNL AUTH J.R.DEVLIN,J.A.ALONSO,C.M.AYRES,G.L.J.KELLER,S.BOBISSE, JRNL AUTH 2 C.W.VANDER KOOI,G.COUKOS,D.GFELLER,A.HARARI,B.M.BAKER JRNL TITL STRUCTURAL DISSIMILARITY FROM SELF DRIVES NEOEPITOPE ESCAPE JRNL TITL 2 FROM IMMUNE TOLERANCE. JRNL REF NAT.CHEM.BIOL. V. 16 1269 2020 JRNL REFN ESSN 1552-4469 JRNL PMID 32807968 JRNL DOI 10.1038/S41589-020-0610-1 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 34958 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.580 REMARK 3 FREE R VALUE TEST SET COUNT : 1949 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.4700 - 6.5000 0.99 2553 150 0.1686 0.2099 REMARK 3 2 6.5000 - 5.1600 1.00 2452 145 0.1963 0.2394 REMARK 3 3 5.1600 - 4.5100 0.99 2382 140 0.1675 0.1813 REMARK 3 4 4.5100 - 4.1000 1.00 2374 141 0.1814 0.2127 REMARK 3 5 4.1000 - 3.8100 1.00 2367 139 0.2133 0.2467 REMARK 3 6 3.8100 - 3.5800 1.00 2373 140 0.2269 0.2473 REMARK 3 7 3.5800 - 3.4000 1.00 2354 139 0.2646 0.2849 REMARK 3 8 3.4000 - 3.2500 0.97 2318 138 0.2832 0.3380 REMARK 3 9 3.2500 - 3.1300 1.00 2335 137 0.2930 0.3151 REMARK 3 10 3.1300 - 3.0200 1.00 2317 137 0.2839 0.3235 REMARK 3 11 3.0200 - 2.9300 0.99 2339 138 0.3021 0.2915 REMARK 3 12 2.9300 - 2.8400 0.99 2318 137 0.3261 0.3895 REMARK 3 13 2.8400 - 2.7700 0.99 2321 138 0.3174 0.3815 REMARK 3 14 2.7700 - 2.7000 0.95 2206 130 0.3564 0.3765 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.945 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 63.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 6917 REMARK 3 ANGLE : 0.739 9399 REMARK 3 CHIRALITY : 0.049 981 REMARK 3 PLANARITY : 0.004 1229 REMARK 3 DIHEDRAL : 23.497 2551 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): -60.9222 33.2909 36.3913 REMARK 3 T TENSOR REMARK 3 T11: 1.0085 T22: 0.3835 REMARK 3 T33: 0.6677 T12: -0.0332 REMARK 3 T13: 0.2443 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 2.0495 L22: 2.3637 REMARK 3 L33: 2.6348 L12: -0.0372 REMARK 3 L13: 0.3763 L23: -0.3122 REMARK 3 S TENSOR REMARK 3 S11: -0.1965 S12: 0.0865 S13: -0.2333 REMARK 3 S21: 0.0742 S22: 0.0409 S23: -0.0476 REMARK 3 S31: 0.7346 S32: -0.0206 S33: 0.1780 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 181 THROUGH 275 ) REMARK 3 ORIGIN FOR THE GROUP (A): -71.7511 5.5195 55.4625 REMARK 3 T TENSOR REMARK 3 T11: 1.2541 T22: 0.4723 REMARK 3 T33: 0.5845 T12: -0.0610 REMARK 3 T13: 0.1534 T23: -0.0195 REMARK 3 L TENSOR REMARK 3 L11: 3.2029 L22: 3.0796 REMARK 3 L33: 3.6699 L12: -0.5293 REMARK 3 L13: 0.0287 L23: -1.8135 REMARK 3 S TENSOR REMARK 3 S11: 0.1485 S12: 0.1832 S13: -0.3558 REMARK 3 S21: -0.7113 S22: 0.0141 S23: 0.1374 REMARK 3 S31: 0.3143 S32: -0.1348 S33: -0.1710 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): -83.2410 19.1329 41.7754 REMARK 3 T TENSOR REMARK 3 T11: 1.1492 T22: 0.5540 REMARK 3 T33: 0.8700 T12: -0.1987 REMARK 3 T13: 0.2393 T23: 0.0338 REMARK 3 L TENSOR REMARK 3 L11: 4.4719 L22: 2.2867 REMARK 3 L33: 0.7719 L12: 1.4399 REMARK 3 L13: 0.5239 L23: 0.1864 REMARK 3 S TENSOR REMARK 3 S11: -0.2815 S12: 0.0813 S13: -0.2149 REMARK 3 S21: -0.3784 S22: 0.2658 S23: 0.3455 REMARK 3 S31: 0.3724 S32: -0.2847 S33: 0.0337 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): -57.2365 39.4154 32.2600 REMARK 3 T TENSOR REMARK 3 T11: 0.8403 T22: 0.4394 REMARK 3 T33: 0.6614 T12: 0.1584 REMARK 3 T13: 0.2134 T23: -0.0241 REMARK 3 L TENSOR REMARK 3 L11: 1.7207 L22: 1.0026 REMARK 3 L33: 6.9298 L12: 0.4124 REMARK 3 L13: -0.2055 L23: 0.7042 REMARK 3 S TENSOR REMARK 3 S11: 0.0589 S12: 0.3680 S13: -0.3359 REMARK 3 S21: 0.4905 S22: 0.4684 S23: -0.2288 REMARK 3 S31: 1.0619 S32: 0.3430 S33: -0.4841 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 3 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.5907 -27.2235 34.5727 REMARK 3 T TENSOR REMARK 3 T11: 0.4022 T22: 0.5150 REMARK 3 T33: 0.5139 T12: 0.1285 REMARK 3 T13: -0.0340 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 5.5413 L22: 4.2445 REMARK 3 L33: 4.6166 L12: 3.0858 REMARK 3 L13: -1.0323 L23: 0.3704 REMARK 3 S TENSOR REMARK 3 S11: -0.0434 S12: -0.1773 S13: -0.2009 REMARK 3 S21: 0.4485 S22: -0.0278 S23: -0.1844 REMARK 3 S31: 0.2746 S32: 0.7547 S33: 0.0686 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 115 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.8551 0.3336 18.8298 REMARK 3 T TENSOR REMARK 3 T11: 0.7303 T22: 0.9177 REMARK 3 T33: 0.7256 T12: -0.3194 REMARK 3 T13: 0.0242 T23: -0.1375 REMARK 3 L TENSOR REMARK 3 L11: 6.0625 L22: 4.1120 REMARK 3 L33: 3.6782 L12: 0.2352 REMARK 3 L13: 0.0861 L23: 0.5675 REMARK 3 S TENSOR REMARK 3 S11: 0.0302 S12: -0.6211 S13: 0.6005 REMARK 3 S21: -0.4502 S22: 0.1327 S23: -0.1743 REMARK 3 S31: -0.9325 S32: 0.8122 S33: -0.1281 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 2 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -57.4962 -27.1888 16.8443 REMARK 3 T TENSOR REMARK 3 T11: 0.2323 T22: 0.5740 REMARK 3 T33: 0.5105 T12: -0.0018 REMARK 3 T13: -0.0060 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 1.5622 L22: 6.5252 REMARK 3 L33: 4.3534 L12: 0.0926 REMARK 3 L13: 0.1143 L23: -0.9661 REMARK 3 S TENSOR REMARK 3 S11: -0.0411 S12: 0.3242 S13: 0.2422 REMARK 3 S21: 0.0160 S22: -0.0259 S23: 0.2565 REMARK 3 S31: 0.2075 S32: -0.2402 S33: 0.0883 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 116 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.0192 -7.3078 6.0415 REMARK 3 T TENSOR REMARK 3 T11: 0.3928 T22: 0.4602 REMARK 3 T33: 0.5030 T12: -0.0959 REMARK 3 T13: -0.0080 T23: 0.0709 REMARK 3 L TENSOR REMARK 3 L11: 7.5622 L22: 2.6635 REMARK 3 L33: 3.2089 L12: 0.0658 REMARK 3 L13: -0.9596 L23: -0.3136 REMARK 3 S TENSOR REMARK 3 S11: 0.2599 S12: -0.3727 S13: 0.5414 REMARK 3 S21: -0.0696 S22: -0.0767 S23: 0.2145 REMARK 3 S31: -0.4679 S32: 0.1860 S33: -0.1498 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UK4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1000244757. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : CRYOGENICALLY-COOLED SINGLE REMARK 200 CRYSTAL SI(220) SIDE BOUNCE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35931 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.690 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 1TVH, 5JZI, & 5C0B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE, PH 6.3, 7.5% REMARK 280 PEG6000, 0.2 M LITHIUM NITRATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.15500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 119.39000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.25350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 119.39000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.15500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.25350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 PRO D 205 REMARK 465 GLU D 206 REMARK 465 SER D 207 REMARK 465 SER D 208 REMARK 465 MET E 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 -127.70 50.01 REMARK 500 GLN A 180 37.63 -85.28 REMARK 500 LYS B 75 15.87 88.53 REMARK 500 ASP D 97 -148.10 -134.06 REMARK 500 ASP D 120 68.72 -154.11 REMARK 500 ASP D 133 -92.61 -82.99 REMARK 500 ARG E 42 -139.80 -116.19 REMARK 500 ARG E 65 -21.77 80.41 REMARK 500 THR E 98 -55.54 -141.34 REMARK 500 THR E 225 77.50 -155.05 REMARK 500 ALA E 244 36.62 -90.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6UJQ RELATED DB: PDB REMARK 900 SELF-PEPTIDE VARIANT PRESENTED BY HLA-A206 REMARK 900 RELATED ID: 6UJO RELATED DB: PDB REMARK 900 NEOANTIGEN VARIANT PRESENTED BY HLA-A206 REMARK 900 RELATED ID: 6UK2 RELATED DB: PDB REMARK 900 SELF-PEPTIDE VARIANT PRESENTED BY HLA-A206 AND BOUND BY THE TCR DBREF 6UK4 A 1 275 UNP U5YJP1 U5YJP1_HUMAN 25 299 DBREF 6UK4 B 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 6UK4 C 1 9 UNP Q5VTY9 HHAT_HUMAN 68 76 DBREF 6UK4 D 1 208 PDB 6UK4 6UK4 1 208 DBREF 6UK4 E 1 245 PDB 6UK4 6UK4 1 245 SEQADV 6UK4 MET A 0 UNP U5YJP1 INITIATING METHIONINE SEQADV 6UK4 MET B 0 UNP P61769 INITIATING METHIONINE SEQADV 6UK4 PHE C 8 UNP Q5VTY9 LEU 75 ENGINEERED MUTATION SEQRES 1 A 276 MET GLY SER HIS SER MET ARG TYR PHE TYR THR SER VAL SEQRES 2 A 276 SER ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE ALA VAL SEQRES 3 A 276 GLY TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER SEQRES 4 A 276 ASP ALA ALA SER GLN ARG MET GLU PRO ARG ALA PRO TRP SEQRES 5 A 276 ILE GLU GLN GLU GLY PRO GLU TYR TRP ASP GLY GLU THR SEQRES 6 A 276 ARG LYS VAL LYS ALA HIS SER GLN THR HIS ARG VAL ASP SEQRES 7 A 276 LEU GLY THR LEU ARG GLY TYR TYR ASN GLN SER GLU ALA SEQRES 8 A 276 GLY SER HIS THR VAL GLN ARG MET TYR GLY CYS ASP VAL SEQRES 9 A 276 GLY SER ASP TRP ARG PHE LEU ARG GLY TYR HIS GLN TYR SEQRES 10 A 276 ALA TYR ASP GLY LYS ASP TYR ILE ALA LEU LYS GLU ASP SEQRES 11 A 276 LEU ARG SER TRP THR ALA ALA ASP MET ALA ALA GLN THR SEQRES 12 A 276 THR LYS HIS LYS TRP GLU ALA ALA HIS VAL ALA GLU GLN SEQRES 13 A 276 LEU ARG ALA TYR LEU GLU GLY THR CYS VAL GLU TRP LEU SEQRES 14 A 276 ARG ARG TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG SEQRES 15 A 276 THR ASP ALA PRO LYS THR HIS MET THR HIS HIS ALA VAL SEQRES 16 A 276 SER ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU SER SEQRES 17 A 276 PHE TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP SEQRES 18 A 276 GLY GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR SEQRES 19 A 276 ARG PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA ALA SEQRES 20 A 276 VAL VAL VAL PRO SER GLY GLN GLU GLN ARG TYR THR CYS SEQRES 21 A 276 HIS VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU SEQRES 22 A 276 ARG TRP GLU SEQRES 1 B 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 B 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 B 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 B 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 B 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 B 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 B 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 B 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 C 9 LYS GLN TRP LEU VAL TRP LEU PHE LEU SEQRES 1 D 208 MET ALA GLN THR VAL THR GLN SER GLN PRO GLU MET SER SEQRES 2 D 208 VAL GLN GLU ALA GLU THR VAL THR LEU SER CYS THR TYR SEQRES 3 D 208 ASP THR SER GLU SER ASP TYR TYR LEU PHE TRP TYR LYS SEQRES 4 D 208 GLN PRO PRO SER ARG GLN MET ILE LEU VAL ILE ARG GLN SEQRES 5 D 208 GLU ALA TYR LYS GLN GLN ASN ALA THR GLU ASN ARG PHE SEQRES 6 D 208 SER VAL ASN PHE GLN LYS ALA ALA LYS SER PHE SER LEU SEQRES 7 D 208 LYS ILE SER ASP SER GLN LEU GLY ASP ALA ALA MET TYR SEQRES 8 D 208 PHE CYS ALA PHE MET ASP SER ASN TYR GLN LEU ILE TRP SEQRES 9 D 208 GLY ALA GLY THR LYS LEU ILE ILE LYS PRO ASN ILE GLN SEQRES 10 D 208 ASN PRO ASP PRO ALA VAL TYR GLN LEU ARG ASP SER LYS SEQRES 11 D 208 SER SER ASP LYS SER VAL CYS LEU PHE THR ASP PHE ASP SEQRES 12 D 208 SER GLN THR ASN VAL SER GLN SER LYS ASP SER ASP VAL SEQRES 13 D 208 TYR ILE THR ASP LYS CYS VAL LEU ASP MET ARG SER MET SEQRES 14 D 208 ASP PHE LYS SER ASN SER ALA VAL ALA TRP SER ASN LYS SEQRES 15 D 208 SER ASP PHE ALA CYS ALA ASN ALA PHE ASN ASN SER ILE SEQRES 16 D 208 ILE PRO GLU ASP THR PHE PHE PRO SER PRO GLU SER SER SEQRES 1 E 245 MET ASP ALA GLY VAL ILE GLN SER PRO ARG HIS GLU VAL SEQRES 2 E 245 THR GLU MET GLY GLN GLU VAL THR LEU ARG CYS LYS PRO SEQRES 3 E 245 ILE SER GLY HIS ASN SER LEU PHE TRP TYR ARG GLN THR SEQRES 4 E 245 MET MET ARG GLY LEU GLU LEU LEU ILE TYR PHE ASN ASN SEQRES 5 E 245 ASN VAL PRO ILE ASP ASP SER GLY MET PRO GLU ASP ARG SEQRES 6 E 245 PHE SER ALA LYS MET PRO ASN ALA SER PHE SER THR LEU SEQRES 7 E 245 LYS ILE GLN PRO SER GLU PRO ARG ASP SER ALA VAL TYR SEQRES 8 E 245 PHE CYS ALA SER SER ARG THR SER PRO THR ASP THR GLN SEQRES 9 E 245 TYR PHE GLY PRO GLY THR ARG LEU THR VAL LEU GLU ASP SEQRES 10 E 245 LEU LYS ASN VAL PHE PRO PRO GLU VAL ALA VAL PHE GLU SEQRES 11 E 245 PRO SER GLU ALA GLU ILE SER HIS THR GLN LYS ALA THR SEQRES 12 E 245 LEU VAL CYS LEU ALA THR GLY PHE TYR PRO ASP HIS VAL SEQRES 13 E 245 GLU LEU SER TRP TRP VAL ASN GLY LYS GLU VAL HIS SER SEQRES 14 E 245 GLY VAL CYS THR ASP PRO GLN PRO LEU LYS GLU GLN PRO SEQRES 15 E 245 ALA LEU ASN ASP SER ARG TYR ALA LEU SER SER ARG LEU SEQRES 16 E 245 ARG VAL SER ALA THR PHE TRP GLN ASP PRO ARG ASN HIS SEQRES 17 E 245 PHE ARG CYS GLN VAL GLN PHE TYR GLY LEU SER GLU ASN SEQRES 18 E 245 ASP GLU TRP THR GLN ASP ARG ALA LYS PRO VAL THR GLN SEQRES 19 E 245 ILE VAL SER ALA GLU ALA TRP GLY ARG ALA ASP HELIX 1 AA1 ALA A 49 GLU A 53 5 5 HELIX 2 AA2 GLY A 56 TYR A 85 1 30 HELIX 3 AA3 ASP A 137 ALA A 150 1 14 HELIX 4 AA4 HIS A 151 GLY A 162 1 12 HELIX 5 AA5 GLY A 162 GLY A 175 1 14 HELIX 6 AA6 GLY A 175 GLN A 180 1 6 HELIX 7 AA7 GLN A 253 GLN A 255 5 3 HELIX 8 AA8 GLN D 84 ALA D 88 5 5 HELIX 9 AA9 GLU E 84 SER E 88 5 5 HELIX 10 AB1 ASP E 117 VAL E 121 5 5 HELIX 11 AB2 SER E 132 GLN E 140 1 9 HELIX 12 AB3 ALA E 199 GLN E 203 1 5 SHEET 1 AA1 8 GLU A 46 PRO A 47 0 SHEET 2 AA1 8 THR A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 AA1 8 GLY A 18 VAL A 28 -1 N VAL A 28 O THR A 31 SHEET 4 AA1 8 HIS A 3 ARG A 14 -1 N PHE A 8 O VAL A 25 SHEET 5 AA1 8 THR A 94 VAL A 103 -1 O ARG A 97 N TYR A 9 SHEET 6 AA1 8 PHE A 109 TYR A 118 -1 O ARG A 111 N ASP A 102 SHEET 7 AA1 8 LYS A 121 LEU A 126 -1 O ILE A 124 N TYR A 116 SHEET 8 AA1 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 AA2 4 LYS A 186 HIS A 192 0 SHEET 2 AA2 4 GLU A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 AA2 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 AA2 4 THR A 228 LEU A 230 -1 N GLU A 229 O ALA A 246 SHEET 1 AA3 4 LYS A 186 HIS A 192 0 SHEET 2 AA3 4 GLU A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 AA3 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 AA3 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 AA4 4 GLU A 222 ASP A 223 0 SHEET 2 AA4 4 ILE A 213 ARG A 219 -1 N ARG A 219 O GLU A 222 SHEET 3 AA4 4 TYR A 257 HIS A 263 -1 O HIS A 260 N THR A 216 SHEET 4 AA4 4 LEU A 270 LEU A 272 -1 O LEU A 272 N CYS A 259 SHEET 1 AA5 4 LYS B 6 SER B 11 0 SHEET 2 AA5 4 ASN B 21 PHE B 30 -1 O SER B 28 N LYS B 6 SHEET 3 AA5 4 PHE B 62 PHE B 70 -1 O LEU B 64 N VAL B 27 SHEET 4 AA5 4 GLU B 50 HIS B 51 -1 N GLU B 50 O TYR B 67 SHEET 1 AA6 4 LYS B 6 SER B 11 0 SHEET 2 AA6 4 ASN B 21 PHE B 30 -1 O SER B 28 N LYS B 6 SHEET 3 AA6 4 PHE B 62 PHE B 70 -1 O LEU B 64 N VAL B 27 SHEET 4 AA6 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 AA7 4 GLU B 44 ARG B 45 0 SHEET 2 AA7 4 GLU B 36 LYS B 41 -1 N LYS B 41 O GLU B 44 SHEET 3 AA7 4 TYR B 78 ASN B 83 -1 O ARG B 81 N ASP B 38 SHEET 4 AA7 4 LYS B 91 LYS B 94 -1 O LYS B 91 N VAL B 82 SHEET 1 AA8 2 THR D 4 THR D 6 0 SHEET 2 AA8 2 THR D 25 ASP D 27 -1 O THR D 25 N THR D 6 SHEET 1 AA9 5 GLU D 11 GLN D 15 0 SHEET 2 AA9 5 THR D 108 LYS D 113 1 O LYS D 109 N MET D 12 SHEET 3 AA9 5 ALA D 89 MET D 96 -1 N ALA D 89 O LEU D 110 SHEET 4 AA9 5 TYR D 34 GLN D 40 -1 N GLN D 40 O MET D 90 SHEET 5 AA9 5 ILE D 47 GLU D 53 -1 O VAL D 49 N TRP D 37 SHEET 1 AB1 4 GLU D 11 GLN D 15 0 SHEET 2 AB1 4 THR D 108 LYS D 113 1 O LYS D 109 N MET D 12 SHEET 3 AB1 4 ALA D 89 MET D 96 -1 N ALA D 89 O LEU D 110 SHEET 4 AB1 4 ILE D 103 TRP D 104 -1 O ILE D 103 N PHE D 95 SHEET 1 AB2 3 VAL D 20 LEU D 22 0 SHEET 2 AB2 3 SER D 75 ILE D 80 -1 O ILE D 80 N VAL D 20 SHEET 3 AB2 3 PHE D 65 GLN D 70 -1 N GLN D 70 O SER D 75 SHEET 1 AB3 4 ALA D 122 ARG D 127 0 SHEET 2 AB3 4 SER D 135 THR D 140 -1 O VAL D 136 N LEU D 126 SHEET 3 AB3 4 PHE D 171 SER D 180 -1 O ALA D 178 N CYS D 137 SHEET 4 AB3 4 TYR D 157 ILE D 158 -1 N TYR D 157 O TRP D 179 SHEET 1 AB4 4 ALA D 122 ARG D 127 0 SHEET 2 AB4 4 SER D 135 THR D 140 -1 O VAL D 136 N LEU D 126 SHEET 3 AB4 4 PHE D 171 SER D 180 -1 O ALA D 178 N CYS D 137 SHEET 4 AB4 4 CYS D 162 MET D 166 -1 N MET D 166 O PHE D 171 SHEET 1 AB5 4 ILE E 6 SER E 8 0 SHEET 2 AB5 4 VAL E 20 LYS E 25 -1 O ARG E 23 N SER E 8 SHEET 3 AB5 4 PHE E 75 ILE E 80 -1 O ILE E 80 N VAL E 20 SHEET 4 AB5 4 PHE E 66 ASN E 72 -1 N SER E 67 O LYS E 79 SHEET 1 AB6 6 HIS E 11 GLU E 15 0 SHEET 2 AB6 6 THR E 110 LEU E 115 1 O THR E 113 N GLU E 12 SHEET 3 AB6 6 VAL E 90 SER E 96 -1 N TYR E 91 O THR E 110 SHEET 4 AB6 6 SER E 32 GLN E 38 -1 N PHE E 34 O ALA E 94 SHEET 5 AB6 6 GLU E 45 ASN E 51 -1 O LEU E 47 N TRP E 35 SHEET 6 AB6 6 VAL E 54 ASP E 57 -1 O VAL E 54 N ASN E 51 SHEET 1 AB7 4 HIS E 11 GLU E 15 0 SHEET 2 AB7 4 THR E 110 LEU E 115 1 O THR E 113 N GLU E 12 SHEET 3 AB7 4 VAL E 90 SER E 96 -1 N TYR E 91 O THR E 110 SHEET 4 AB7 4 TYR E 105 PHE E 106 -1 O TYR E 105 N SER E 95 SHEET 1 AB8 4 GLU E 125 PHE E 129 0 SHEET 2 AB8 4 LYS E 141 PHE E 151 -1 O VAL E 145 N PHE E 129 SHEET 3 AB8 4 TYR E 189 SER E 198 -1 O TYR E 189 N PHE E 151 SHEET 4 AB8 4 VAL E 171 THR E 173 -1 N CYS E 172 O ARG E 194 SHEET 1 AB9 4 GLU E 125 PHE E 129 0 SHEET 2 AB9 4 LYS E 141 PHE E 151 -1 O VAL E 145 N PHE E 129 SHEET 3 AB9 4 TYR E 189 SER E 198 -1 O TYR E 189 N PHE E 151 SHEET 4 AB9 4 LEU E 178 LYS E 179 -1 N LEU E 178 O ALA E 190 SHEET 1 AC1 4 LYS E 165 VAL E 167 0 SHEET 2 AC1 4 VAL E 156 VAL E 162 -1 N VAL E 162 O LYS E 165 SHEET 3 AC1 4 HIS E 208 PHE E 215 -1 O GLN E 212 N SER E 159 SHEET 4 AC1 4 GLN E 234 TRP E 241 -1 O ALA E 238 N CYS E 211 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.05 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.03 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.03 SSBOND 4 CYS D 24 CYS D 93 1555 1555 2.03 SSBOND 5 CYS D 137 CYS D 187 1555 1555 2.04 SSBOND 6 CYS D 162 CYS E 172 1555 1555 2.04 SSBOND 7 CYS E 24 CYS E 93 1555 1555 2.02 SSBOND 8 CYS E 146 CYS E 211 1555 1555 2.03 CISPEP 1 TYR A 209 PRO A 210 0 0.56 CISPEP 2 HIS B 31 PRO B 32 0 1.41 CISPEP 3 SER E 8 PRO E 9 0 -5.40 CISPEP 4 GLN E 81 PRO E 82 0 -6.60 CISPEP 5 TYR E 152 PRO E 153 0 -0.24 CRYST1 60.310 86.507 238.780 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016581 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011560 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004188 0.00000