HEADER HYDROLASE/DNA 04-OCT-19 6UKF TITLE HHAI ENDONUCLEASE IN COMPLEX WITH DNA AT 1 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HHAI RESTRICTION ENDONUCLEASE; COMPND 3 CHAIN: X; COMPND 4 EC: 3.-.-.-; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*TP*CP*CP*AP*AP*GP*CP*GP*CP*AP*AP*CP*G)-3'); COMPND 8 CHAIN: A; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(*CP*GP*(5IT)P*TP*GP*CP*GP*CP*TP*(5IT)P*GP*GP*A)- COMPND 12 3'); COMPND 13 CHAIN: B; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS PARAHAEMOLYTICUS; SOURCE 3 ORGANISM_TAXID: 735; SOURCE 4 GENE: HMPREF1050_0931; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: HAEMOPHILUS PARAHAEMOLYTICUS; SOURCE 10 ORGANISM_TAXID: 735; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HAEMOPHILUS PARAHAEMOLYTICUS; SOURCE 14 ORGANISM_TAXID: 735 KEYWDS RESTRICTION, MODIFICATION, PROTEIN-DNA COMPLEX, IODINE PHASING, KEYWDS 2 HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.R.HORTON,X.CHENG REVDAT 4 11-OCT-23 6UKF 1 REMARK REVDAT 3 04-MAR-20 6UKF 1 JRNL REVDAT 2 08-JAN-20 6UKF 1 JRNL REVDAT 1 18-DEC-19 6UKF 0 JRNL AUTH J.R.HORTON,J.YANG,X.ZHANG,T.PETRONZIO,A.FOMENKOV,G.G.WILSON, JRNL AUTH 2 R.J.ROBERTS,X.CHENG JRNL TITL STRUCTURE OF HHAI ENDONUCLEASE WITH COGNATE DNA AT AN ATOMIC JRNL TITL 2 RESOLUTION OF 1.0 ANGSTROM. JRNL REF NUCLEIC ACIDS RES. V. 48 1466 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 31879785 JRNL DOI 10.1093/NAR/GKZ1195 REMARK 2 REMARK 2 RESOLUTION. 1.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 148028 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.350 REMARK 3 FREE R VALUE TEST SET COUNT : 1997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.3900 - 2.4000 0.99 11440 156 0.1605 0.1561 REMARK 3 2 2.4000 - 1.9100 0.99 11225 154 0.1461 0.1679 REMARK 3 3 1.9100 - 1.6700 0.99 11109 152 0.1336 0.1454 REMARK 3 4 1.6700 - 1.5100 0.98 10973 150 0.1303 0.1372 REMARK 3 5 1.5100 - 1.4100 0.98 10982 151 0.1324 0.1426 REMARK 3 6 1.4100 - 1.3200 0.98 10919 148 0.1364 0.1626 REMARK 3 7 1.3200 - 1.2600 0.97 10892 149 0.1388 0.1729 REMARK 3 8 1.2600 - 1.2000 0.97 10797 148 0.1443 0.1709 REMARK 3 9 1.2000 - 1.1600 0.95 10576 145 0.1562 0.1814 REMARK 3 10 1.1600 - 1.1200 0.95 10602 145 0.1754 0.2017 REMARK 3 11 1.1200 - 1.0800 0.94 10451 143 0.2079 0.2402 REMARK 3 12 1.0800 - 1.0500 0.90 10064 138 0.2379 0.2352 REMARK 3 13 1.0500 - 1.0200 0.84 9310 128 0.2823 0.2931 REMARK 3 14 1.0200 - 1.0000 0.60 6691 90 0.3356 0.4293 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.111 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.623 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2850 REMARK 3 ANGLE : 0.825 3939 REMARK 3 CHIRALITY : 0.059 418 REMARK 3 PLANARITY : 0.004 426 REMARK 3 DIHEDRAL : 22.000 1085 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UKF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1000244193. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 148223 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.000 REMARK 200 RESOLUTION RANGE LOW (A) : 26.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.01 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.06900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 6UKE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% V/V 2-PROPANOL, 0.1 M SODIUM REMARK 280 PHOSPHATE DIBASIC / CITRIC ACID, PH 4.2, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 18.65850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS X 4 NZ REMARK 470 LYS X 16 CD CE NZ REMARK 470 THR X 32 OG1 CG2 REMARK 470 SER X 33 OG REMARK 470 LYS X 67 CE NZ REMARK 470 LYS X 102 NZ REMARK 470 LYS X 167 CE NZ REMARK 470 LYS X 178 CD CE NZ REMARK 470 LYS X 179 CG CD CE NZ REMARK 470 ARG X 186 CG CD NE CZ NH1 NH2 REMARK 470 GLU X 189 CG CD OE1 OE2 REMARK 470 GLU X 212 CG CD OE1 OE2 REMARK 470 ASN X 213 CG OD1 ND2 REMARK 470 ASN X 214 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH12 ARG X 162 OP2 DC A 3 1.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU X 5 CD GLU X 5 OE1 -0.067 REMARK 500 GLU X 5 CD GLU X 5 OE2 0.075 REMARK 500 GLU X 7 CD GLU X 7 OE2 0.082 REMARK 500 GLU X 46 CD GLU X 46 OE1 -0.071 REMARK 500 GLU X 46 CD GLU X 46 OE2 0.072 REMARK 500 GLU X 65 CD GLU X 65 OE1 -0.067 REMARK 500 GLU X 65 CD GLU X 65 OE2 0.074 REMARK 500 GLU X 77 CD GLU X 77 OE1 -0.067 REMARK 500 GLU X 77 CD GLU X 77 OE2 0.081 REMARK 500 GLU X 91 CD GLU X 91 OE2 0.079 REMARK 500 GLU X 145 CD GLU X 145 OE2 0.080 REMARK 500 GLU X 194 CD GLU X 194 OE1 -0.067 REMARK 500 GLU X 194 CD GLU X 194 OE2 0.077 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP X 34 CB - CG - OD1 ANGL. DEV. = -7.7 DEGREES REMARK 500 DC B 1 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DG B 5 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER X 33 -148.47 -88.77 REMARK 500 ASN X 41 73.71 -118.43 REMARK 500 CYS X 54 47.19 -150.84 REMARK 500 PRO X 107 47.94 -87.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA X 715 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER X 151 OG REMARK 620 2 THR X 153 OG1 143.4 REMARK 620 3 HOH X 845 O 106.1 86.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO X 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO X 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO X 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO X 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO X 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO X 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO X 707 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO X 708 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO X 709 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO X 710 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO X 711 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO X 712 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT X 713 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 X 714 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA X 715 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 101 DBREF 6UKF X 1 258 UNP I3DBY6 I3DBY6_HAEPH 1 258 DBREF 6UKF A 1 13 PDB 6UKF 6UKF 1 13 DBREF 6UKF B 1 13 PDB 6UKF 6UKF 1 13 SEQRES 1 X 258 MET ASN TRP LYS GLU PHE GLU VAL PHE CYS VAL THR TYR SEQRES 2 X 258 LEU ASN LYS THR TYR GLY ASN LYS PHE ALA LYS LYS GLY SEQRES 3 X 258 GLU SER ASP SER THR THR SER ASP ILE LEU PHE THR GLY SEQRES 4 X 258 ASN ASN PRO PHE TYR ILE GLU ALA LYS MET PRO HIS SER SEQRES 5 X 258 GLN CYS GLY GLN PHE VAL LEU ILE PRO ASN ARG ALA GLU SEQRES 6 X 258 TYR LYS PHE ASP TYR SER PRO LYS ASN LYS SER GLU ILE SEQRES 7 X 258 ASN PRO TYR THR GLN LYS ILE MET GLN PHE MET SER GLU SEQRES 8 X 258 ASN PHE SER GLU TYR ALA ASN LEU SER THR LYS GLY LYS SEQRES 9 X 258 ILE ILE PRO LEU PRO GLU SER VAL PHE VAL ASN TRP ILE SEQRES 10 X 258 LYS GLU TYR TYR LYS SER LYS SER VAL LYS PHE PHE ILE SEQRES 11 X 258 THR SER ASN GLY ASP PHE ILE ILE PHE PRO ILE GLU HIS SEQRES 12 X 258 PHE GLU HIS TYR PHE ASN VAL SER CYS THR TYR ARG ILE SEQRES 13 X 258 LYS LYS SER GLY SER ARG HIS LEU ASN SER LYS SER LEU SEQRES 14 X 258 PRO ASP PHE LYS GLN ALA LEU ASP LYS LYS GLY ILE SER SEQRES 15 X 258 TYR THR MET ARG GLY LEU GLU LEU HIS SER ASP GLU ASN SEQRES 16 X 258 ILE HIS ASP LYS ARG ILE SER GLY ASP ASP LYS ASP PHE SEQRES 17 X 258 LEU ILE LYS GLU ASN ASN GLY ALA TYR HIS VAL LYS ILE SEQRES 18 X 258 LEU SER ASN THR PHE ASN ALA ASN VAL ILE PHE SER ILE SEQRES 19 X 258 SER LEU LYS ASN ASN ILE SER LEU PHE ILE LEU ASN GLU SEQRES 20 X 258 ASP ARG LYS ALA PHE GLU ALA ALA ILE SER LEU SEQRES 1 A 13 DT DC DC DA DA DG DC DG DC DA DA DC DG SEQRES 1 B 13 DC DG 5IU DT DG DC DG DC DT 5IU DG DG DA HET 5IU B 3 29 HET 5IU B 10 29 HET EDO X 701 4 HET EDO X 702 4 HET EDO X 703 4 HET EDO X 704 4 HET EDO X 705 8 HET EDO X 706 4 HET EDO X 707 4 HET EDO X 708 4 HET EDO X 709 4 HET EDO X 710 4 HET EDO X 711 4 HET EDO X 712 4 HET ACT X 713 4 HET PO4 X 714 5 HET CA X 715 1 HET EDO A 101 4 HET EDO A 102 4 HET EDO A 103 4 HET EDO B 101 4 HETNAM 5IU 5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETNAM PO4 PHOSPHATE ION HETNAM CA CALCIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 5IU 2(C9 H12 I N2 O8 P) FORMUL 4 EDO 16(C2 H6 O2) FORMUL 16 ACT C2 H3 O2 1- FORMUL 17 PO4 O4 P 3- FORMUL 18 CA CA 2+ FORMUL 23 HOH *258(H2 O) HELIX 1 AA1 ASN X 2 GLY X 19 1 18 HELIX 2 AA2 ASN X 79 ASN X 92 1 14 HELIX 3 AA3 ASN X 92 ALA X 97 1 6 HELIX 4 AA4 PRO X 109 LYS X 124 1 16 HELIX 5 AA5 GLU X 142 HIS X 146 5 5 HELIX 6 AA6 ASN X 165 LYS X 167 5 3 HELIX 7 AA7 SER X 168 GLY X 180 1 13 HELIX 8 AA8 SER X 241 ILE X 256 1 16 SHEET 1 AA1 5 PHE X 22 ALA X 23 0 SHEET 2 AA1 5 ILE X 35 PHE X 37 -1 O LEU X 36 N ALA X 23 SHEET 3 AA1 5 PHE X 43 ALA X 47 -1 O ILE X 45 N ILE X 35 SHEET 4 AA1 5 VAL X 126 SER X 132 1 O ILE X 130 N GLU X 46 SHEET 5 AA1 5 PHE X 136 PRO X 140 -1 O ILE X 137 N THR X 131 SHEET 1 AA2 5 LYS X 67 TYR X 70 0 SHEET 2 AA2 5 HIS X 51 ASN X 62 -1 N ILE X 60 O ASP X 69 SHEET 3 AA2 5 ALA X 228 LEU X 236 -1 O ILE X 234 N SER X 52 SHEET 4 AA2 5 PHE X 148 ILE X 156 -1 N ASN X 149 O SER X 235 SHEET 5 AA2 5 LYS X 104 ILE X 105 -1 N LYS X 104 O TYR X 154 SHEET 1 AA3 4 ARG X 162 HIS X 163 0 SHEET 2 AA3 4 TYR X 217 ILE X 221 -1 O ILE X 221 N ARG X 162 SHEET 3 AA3 4 ASP X 207 GLU X 212 -1 N LYS X 211 O HIS X 218 SHEET 4 AA3 4 LYS X 199 SER X 202 -1 N ILE X 201 O PHE X 208 SHEET 1 AA4 2 THR X 184 ARG X 186 0 SHEET 2 AA4 2 GLU X 189 HIS X 191 -1 O HIS X 191 N THR X 184 LINK O3' DG B 2 P 5IU B 3 1555 1555 1.61 LINK O3' 5IU B 3 P DT B 4 1555 1555 1.61 LINK O3' DT B 9 P 5IU B 10 1555 1555 1.61 LINK O3' 5IU B 10 P DG B 11 1555 1555 1.61 LINK OG SER X 151 CA CA X 715 1555 1555 2.83 LINK OG1ATHR X 153 CA CA X 715 1555 1555 2.68 LINK CA CA X 715 O HOH X 845 1555 1555 3.07 SITE 1 AC1 4 DG B 5 DC B 6 LYS X 158 ARG X 200 SITE 1 AC2 5 MET X 49 PRO X 50 HIS X 51 HOH X 844 SITE 2 AC2 5 HOH X 877 SITE 1 AC3 8 ASN X 149 VAL X 150 SER X 151 SER X 233 SITE 2 AC3 8 SER X 235 EDO X 708 HOH X 805 HOH X 870 SITE 1 AC4 6 GLY X 19 ASN X 20 ASN X 149 LYS X 237 SITE 2 AC4 6 ASN X 238 ASN X 239 SITE 1 AC5 6 HIS X 163 LEU X 164 LEU X 188 HIS X 218 SITE 2 AC5 6 VAL X 219 HOH X 813 SITE 1 AC6 4 PRO X 42 PRO X 107 SER X 125 HOH X 891 SITE 1 AC7 3 ARG X 249 LYS X 250 GLU X 253 SITE 1 AC8 5 PHE X 22 ALA X 23 LYS X 25 THR X 38 SITE 2 AC8 5 EDO X 703 SITE 1 AC9 4 TYR X 18 PHE X 37 ILE X 256 HOH X 819 SITE 1 AD1 6 DC B 8 DT B 9 HOH B 205 ARG X 162 SITE 2 AD1 6 HIS X 163 HOH X 896 SITE 1 AD2 6 GLU X 91 ASN X 92 PHE X 93 SER X 94 SITE 2 AD2 6 GLU X 95 HOH X 806 SITE 1 AD3 8 DG A 8 SER X 30 THR X 32 SER X 33 SITE 2 AD3 8 GLU X 46 TYR X 120 TYR X 121 HOH X 831 SITE 1 AD4 7 ALA X 23 LYS X 24 LYS X 25 ASP X 34 SITE 2 AD4 7 TYR X 44 ILE X 105 HOH X 808 SITE 1 AD5 4 GLU X 145 HIS X 146 LYS X 237 HOH X 851 SITE 1 AD6 3 SER X 151 THR X 153 HOH X 845 SITE 1 AD7 5 DA A 11 DC A 12 HOH A 201 DT B 4 SITE 2 AD7 5 DG B 5 SITE 1 AD8 7 DC A 7 DG A 8 HOH A 202 DG B 7 SITE 2 AD8 7 DC B 8 ASP X 29 SER X 30 SITE 1 AD9 5 DG A 8 DC A 9 HOH A 202 HOH A 206 SITE 2 AD9 5 DG B 7 SITE 1 AE1 3 DT B 4 DG B 5 THR X 101 CRYST1 61.018 37.317 69.027 90.00 109.77 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016389 0.000000 0.005890 0.00000 SCALE2 0.000000 0.026797 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015394 0.00000