HEADER HYDROLASE/DNA 04-OCT-19 6UKG TITLE HHAI ENDONUCLEASE IN COMPLEX WITH DNA IN SPACE GROUP P21 (PH 4.2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HHAI RESTRICTION ENDONUCLEASE; COMPND 3 CHAIN: X; COMPND 4 EC: 3.-.-.-; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*CP*TP*GP*TP*TP*GP*CP*GP*CP*TP*TP*GP*GP*A)-3'); COMPND 8 CHAIN: A; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(*CP*CP*AP*AP*GP*CP*GP*CP*AP*AP*CP*AP*G)-3'); COMPND 12 CHAIN: B; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS PARAHAEMOLYTICUS; SOURCE 3 ORGANISM_TAXID: 735; SOURCE 4 GENE: HMPREF1050_0931; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: HAEMOPHILUS PARAHAEMOLYTICUS; SOURCE 10 ORGANISM_TAXID: 735; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HAEMOPHILUS PARAHAEMOLYTICUS; SOURCE 14 ORGANISM_TAXID: 735 KEYWDS RESTRICTION, MODIFICATION, PROTEIN-DNA COMPLEX, IODINE PHASING, KEYWDS 2 HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.R.HORTON,X.CHENG REVDAT 4 11-OCT-23 6UKG 1 REMARK REVDAT 3 04-MAR-20 6UKG 1 JRNL REVDAT 2 08-JAN-20 6UKG 1 JRNL REVDAT 1 18-DEC-19 6UKG 0 JRNL AUTH J.R.HORTON,J.YANG,X.ZHANG,T.PETRONZIO,A.FOMENKOV,G.G.WILSON, JRNL AUTH 2 R.J.ROBERTS,X.CHENG JRNL TITL STRUCTURE OF HHAI ENDONUCLEASE WITH COGNATE DNA AT AN ATOMIC JRNL TITL 2 RESOLUTION OF 1.0 ANGSTROM. JRNL REF NUCLEIC ACIDS RES. V. 48 1466 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 31879785 JRNL DOI 10.1093/NAR/GKZ1195 REMARK 2 REMARK 2 RESOLUTION. 1.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.9 REMARK 3 NUMBER OF REFLECTIONS : 181702 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.141 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.157 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.010 REMARK 3 FREE R VALUE TEST SET COUNT : 3656 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.5200 - 3.4400 0.67 5135 109 0.1652 0.2009 REMARK 3 2 3.4400 - 2.7300 0.95 7322 148 0.1547 0.1479 REMARK 3 3 2.7300 - 2.3800 1.00 7657 155 0.1495 0.1620 REMARK 3 4 2.3800 - 2.1600 0.61 4669 94 0.1375 0.1628 REMARK 3 5 2.1600 - 2.0100 1.00 7639 158 0.1342 0.1334 REMARK 3 6 2.0100 - 1.8900 0.58 4461 94 0.1303 0.1491 REMARK 3 7 1.8900 - 1.8000 0.92 7067 143 0.1234 0.1391 REMARK 3 8 1.8000 - 1.7200 0.99 7616 159 0.1131 0.1252 REMARK 3 9 1.7200 - 1.6500 0.99 7683 159 0.1127 0.1443 REMARK 3 10 1.6500 - 1.6000 1.00 7689 161 0.1072 0.1199 REMARK 3 11 1.6000 - 1.5500 0.99 7621 158 0.1062 0.1388 REMARK 3 12 1.5500 - 1.5000 0.99 7661 157 0.1117 0.1340 REMARK 3 13 1.5000 - 1.4600 0.99 7604 158 0.1166 0.1448 REMARK 3 14 1.4600 - 1.4300 0.98 7522 153 0.1225 0.1567 REMARK 3 15 1.4300 - 1.3900 0.99 7567 153 0.1225 0.1279 REMARK 3 16 1.3900 - 1.3600 0.99 7686 160 0.1293 0.1764 REMARK 3 17 1.3600 - 1.3400 0.99 7597 158 0.1359 0.1581 REMARK 3 18 1.3400 - 1.3100 0.99 7645 155 0.1441 0.1827 REMARK 3 19 1.3100 - 1.2900 0.99 7548 155 0.1491 0.1410 REMARK 3 20 1.2900 - 1.2700 0.99 7633 155 0.1526 0.1497 REMARK 3 21 1.2700 - 1.2500 0.99 7583 159 0.1558 0.1920 REMARK 3 22 1.2500 - 1.2300 0.94 7289 145 0.1673 0.2038 REMARK 3 23 1.2300 - 1.2100 0.82 6304 126 0.1932 0.1850 REMARK 3 24 1.2100 - 1.1900 0.71 5448 111 0.2002 0.1944 REMARK 3 25 1.1900 - 1.1800 0.61 4680 100 0.2269 0.2147 REMARK 3 26 1.1800 - 1.1600 0.48 3720 73 0.2470 0.2544 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.073 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.608 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3224 REMARK 3 ANGLE : 0.996 4552 REMARK 3 CHIRALITY : 0.070 490 REMARK 3 PLANARITY : 0.008 439 REMARK 3 DIHEDRAL : 22.814 1263 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UKG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1000244205. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 192216 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.160 REMARK 200 RESOLUTION RANGE LOW (A) : 31.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.9 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.35400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 6UKE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% V/V 2-PROPANOL, SODIUM PHOSPHATE / REMARK 280 CITRIC ACID, PH 4.2, 0.2 M LITHIUM SULFATE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 18.77250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DT B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU X 95 CG CD OE1 OE2 REMARK 470 ASP X 135 CG OD1 OD2 REMARK 470 LYS X 179 CG CD CE NZ REMARK 470 ARG X 186 CG CD NE CZ NH1 NH2 REMARK 470 GLU X 189 CG CD OE1 OE2 REMARK 470 ASN X 213 CG OD1 ND2 REMARK 470 ASN X 214 CG OD1 ND2 REMARK 470 DA A 14 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DA A 14 N9 C8 N7 C5 C6 N6 N1 REMARK 470 DA A 14 C2 N3 C4 REMARK 470 DC B 2 P OP1 OP2 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP2 DG A 12 O HOH A 101 1.85 REMARK 500 OP2 DA A 4 O HOH A 102 1.89 REMARK 500 O HOH X 928 O HOH X 1073 2.06 REMARK 500 O HOH X 903 O HOH X 914 2.10 REMARK 500 O HOH X 1038 O HOH X 1117 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HD22 ASN X 239 O HOH X 906 2555 1.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU X 5 CD GLU X 5 OE2 0.072 REMARK 500 GLU X 7 CD GLU X 7 OE2 0.081 REMARK 500 GLU X 46 CD GLU X 46 OE2 0.069 REMARK 500 GLU X 91 CD GLU X 91 OE2 0.077 REMARK 500 GLU X 142 CD GLU X 142 OE2 0.073 REMARK 500 GLU X 145 CD GLU X 145 OE2 0.085 REMARK 500 GLU X 194 CD GLU X 194 OE1 -0.073 REMARK 500 GLU X 194 CD GLU X 194 OE2 0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC B 9 O4' - C4' - C3' ANGL. DEV. = -2.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN X 41 72.37 -118.08 REMARK 500 CYS X 54 50.91 -161.58 REMARK 500 PRO X 107 47.15 -89.09 REMARK 500 ASN X 214 -108.97 70.67 REMARK 500 ALA X 216 -164.58 -171.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DG A 8 0.05 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 X 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO X 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 X 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO X 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 X 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1801 DBREF 6UKG X 1 258 UNP I3DBY6 I3DBY6_HAEPH 1 258 DBREF 6UKG A 1 14 PDB 6UKG 6UKG 1 14 DBREF 6UKG B 1 14 PDB 6UKG 6UKG 1 14 SEQRES 1 X 258 MET ASN TRP LYS GLU PHE GLU VAL PHE CYS VAL THR TYR SEQRES 2 X 258 LEU ASN LYS THR TYR GLY ASN LYS PHE ALA LYS LYS GLY SEQRES 3 X 258 GLU SER ASP SER THR THR SER ASP ILE LEU PHE THR GLY SEQRES 4 X 258 ASN ASN PRO PHE TYR ILE GLU ALA LYS MET PRO HIS SER SEQRES 5 X 258 GLN CYS GLY GLN PHE VAL LEU ILE PRO ASN ARG ALA GLU SEQRES 6 X 258 TYR LYS PHE ASP TYR SER PRO LYS ASN LYS SER GLU ILE SEQRES 7 X 258 ASN PRO TYR THR GLN LYS ILE MET GLN PHE MET SER GLU SEQRES 8 X 258 ASN PHE SER GLU TYR ALA ASN LEU SER THR LYS GLY LYS SEQRES 9 X 258 ILE ILE PRO LEU PRO GLU SER VAL PHE VAL ASN TRP ILE SEQRES 10 X 258 LYS GLU TYR TYR LYS SER LYS SER VAL LYS PHE PHE ILE SEQRES 11 X 258 THR SER ASN GLY ASP PHE ILE ILE PHE PRO ILE GLU HIS SEQRES 12 X 258 PHE GLU HIS TYR PHE ASN VAL SER CYS THR TYR ARG ILE SEQRES 13 X 258 LYS LYS SER GLY SER ARG HIS LEU ASN SER LYS SER LEU SEQRES 14 X 258 PRO ASP PHE LYS GLN ALA LEU ASP LYS LYS GLY ILE SER SEQRES 15 X 258 TYR THR MET ARG GLY LEU GLU LEU HIS SER ASP GLU ASN SEQRES 16 X 258 ILE HIS ASP LYS ARG ILE SER GLY ASP ASP LYS ASP PHE SEQRES 17 X 258 LEU ILE LYS GLU ASN ASN GLY ALA TYR HIS VAL LYS ILE SEQRES 18 X 258 LEU SER ASN THR PHE ASN ALA ASN VAL ILE PHE SER ILE SEQRES 19 X 258 SER LEU LYS ASN ASN ILE SER LEU PHE ILE LEU ASN GLU SEQRES 20 X 258 ASP ARG LYS ALA PHE GLU ALA ALA ILE SER LEU SEQRES 1 A 14 DC DT DG DT DT DG DC DG DC DT DT DG DG SEQRES 2 A 14 DA SEQRES 1 B 14 DT DC DC DA DA DG DC DG DC DA DA DC DA SEQRES 2 B 14 DG HET PO4 X 801 5 HET EDO X 802 10 HET SO4 X 803 10 HET EDO X 804 10 HET SO4 X 805 5 HET EDO B1801 10 HETNAM PO4 PHOSPHATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 4 PO4 O4 P 3- FORMUL 5 EDO 3(C2 H6 O2) FORMUL 6 SO4 2(O4 S 2-) FORMUL 10 HOH *270(H2 O) HELIX 1 AA1 ASN X 2 GLY X 19 1 18 HELIX 2 AA2 ASN X 79 ASN X 92 1 14 HELIX 3 AA3 ASN X 92 ALA X 97 1 6 HELIX 4 AA4 PRO X 109 LYS X 124 1 16 HELIX 5 AA5 GLU X 142 HIS X 146 5 5 HELIX 6 AA6 ASN X 165 LYS X 167 5 3 HELIX 7 AA7 SER X 168 GLY X 180 1 13 HELIX 8 AA8 SER X 241 ILE X 256 1 16 SHEET 1 AA1 5 PHE X 22 LYS X 24 0 SHEET 2 AA1 5 ILE X 35 PHE X 37 -1 O LEU X 36 N ALA X 23 SHEET 3 AA1 5 PHE X 43 ALA X 47 -1 O PHE X 43 N PHE X 37 SHEET 4 AA1 5 VAL X 126 SER X 132 1 O ILE X 130 N GLU X 46 SHEET 5 AA1 5 PHE X 136 PRO X 140 -1 O ILE X 137 N THR X 131 SHEET 1 AA2 5 LYS X 67 TYR X 70 0 SHEET 2 AA2 5 HIS X 51 ASN X 62 -1 N ASN X 62 O LYS X 67 SHEET 3 AA2 5 ALA X 228 LEU X 236 -1 O ILE X 234 N SER X 52 SHEET 4 AA2 5 PHE X 148 ILE X 156 -1 N ASN X 149 O SER X 235 SHEET 5 AA2 5 LYS X 104 ILE X 105 -1 N LYS X 104 O TYR X 154 SHEET 1 AA3 4 ARG X 162 HIS X 163 0 SHEET 2 AA3 4 ALA X 216 ILE X 221 -1 O ILE X 221 N ARG X 162 SHEET 3 AA3 4 LYS X 206 ASN X 213 -1 N LYS X 211 O HIS X 218 SHEET 4 AA3 4 ARG X 200 GLY X 203 -1 N ILE X 201 O PHE X 208 SHEET 1 AA4 2 THR X 184 ARG X 186 0 SHEET 2 AA4 2 GLU X 189 HIS X 191 -1 O HIS X 191 N THR X 184 SITE 1 AC1 3 GLU X 145 HIS X 146 HOH X 917 SITE 1 AC2 2 TYR X 81 ASN X 115 SITE 1 AC3 9 GLY X 19 ASN X 20 LYS X 21 ASN X 149 SITE 2 AC3 9 LYS X 237 ASN X 238 ASN X 239 HOH X 907 SITE 3 AC3 9 HOH X1023 SITE 1 AC4 5 HOH A 103 ASN X 224 THR X 225 PHE X 226 SITE 2 AC4 5 ASN X 227 SITE 1 AC5 9 GLU X 194 ASN X 195 ILE X 196 HIS X 197 SITE 2 AC5 9 GLU X 212 TYR X 217 HOH X 906 HOH X1011 SITE 3 AC5 9 HOH X1017 SITE 1 AC6 5 DG B 6 DC B 7 HOH B1905 LYS X 158 SITE 2 AC6 5 ARG X 200 CRYST1 61.849 37.545 69.923 90.00 110.26 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016168 0.000000 0.005967 0.00000 SCALE2 0.000000 0.026635 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015244 0.00000