HEADER TRANSFERASE 07-OCT-19 6UL8 TITLE RIP2 KINASE CATALYTIC DOMAIN COMPLEX WITH (5S,6S,8R)-2- TITLE 2 (BENZO[D]THIAZOL-5-YL)-6-HYDROXY-4,5,6,7,8,9-HEXAHYDRO-5,8- TITLE 3 METHANOPYRAZOLO[1,5-A][1,3]DIAZOCINE-3-CARBOXAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-INTERACTING SERINE/THREONINE-PROTEIN KINASE 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CARD-CONTAINING INTERLEUKIN-1 BETA-CONVERTING ENZYME- COMPND 5 ASSOCIATED KINASE,CARD-CONTAINING IL-1 BETA ICE-KINASE,RIP-LIKE- COMPND 6 INTERACTING CLARP KINASE,RECEPTOR-INTERACTING PROTEIN 2,RIP-2, COMPND 7 TYROSINE-PROTEIN KINASE RIPK2; COMPND 8 EC: 2.7.11.1,2.7.10.2; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RIPK2, CARDIAK, RICK, RIP2, UNQ277/PRO314/PRO34092; SOURCE 6 EXPRESSION_SYSTEM: UNIDENTIFIED BACULOVIRUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10469; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.M.SHEWCHUK,M.A.CONVERY REVDAT 2 11-OCT-23 6UL8 1 LINK REVDAT 1 04-DEC-19 6UL8 0 JRNL AUTH C.D.HAFFNER,A.K.CHARNLEY,C.J.AQUINO,L.CASILLAS,M.A.CONVERY, JRNL AUTH 2 J.A.COX,M.A.ELBAN,N.C.GOODWIN,P.J.GOUGH,P.A.HAILE, JRNL AUTH 3 T.V.HUGHES,B.KNAPP-REED,C.KREATSOULAS,A.S.LAKDAWALA,H.LI, JRNL AUTH 4 Y.LIAN,D.LIPSHUTZ,J.F.MEHLMANN,M.OUELLETTE,J.ROMANO, JRNL AUTH 5 L.SHEWCHUK,A.SHU,B.J.VOTTA,H.ZHOU,J.BERTIN,R.W.MARQUIS JRNL TITL DISCOVERY OF PYRAZOLOCARBOXAMIDES AS POTENT AND SELECTIVE JRNL TITL 2 RECEPTOR INTERACTING PROTEIN 2 (RIP2) KINASE INHIBITORS. JRNL REF ACS MED.CHEM.LETT. V. 10 1518 2019 JRNL REFN ISSN 1948-5875 JRNL PMID 31749904 JRNL DOI 10.1021/ACSMEDCHEMLETT.9B00141 REMARK 2 REMARK 2 RESOLUTION. 2.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 26118 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1312 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.68 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1941 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4444 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 51 REMARK 3 SOLVENT ATOMS : 121 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.99000 REMARK 3 B22 (A**2) : 0.99000 REMARK 3 B33 (A**2) : -3.20000 REMARK 3 B12 (A**2) : 0.49000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.390 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.253 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.215 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.997 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4639 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4268 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6332 ; 1.391 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9891 ; 0.951 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 561 ; 5.692 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 201 ;33.975 ;23.781 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 751 ;12.340 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;13.071 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 716 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5064 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 915 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 3 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 66 A 168 4 REMARK 3 1 B 66 B 168 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1626 ; 0.220 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1626 ; 3.950 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 209 A 228 4 REMARK 3 1 B 209 B 228 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 A (A): 336 ; 0.330 ; 0.500 REMARK 3 MEDIUM THERMAL 2 A (A**2): 336 ; 3.590 ; 2.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 3 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 248 A 290 4 REMARK 3 1 B 248 B 290 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 3 A (A): 682 ; 0.360 ; 0.500 REMARK 3 MEDIUM THERMAL 3 A (A**2): 682 ; 6.190 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 310 REMARK 3 ORIGIN FOR THE GROUP (A): 45.5920 -40.2150 4.0620 REMARK 3 T TENSOR REMARK 3 T11: 0.0876 T22: 0.1638 REMARK 3 T33: 0.0249 T12: -0.0313 REMARK 3 T13: 0.0266 T23: 0.0176 REMARK 3 L TENSOR REMARK 3 L11: 0.3991 L22: 1.3118 REMARK 3 L33: 1.1473 L12: 0.2701 REMARK 3 L13: 0.2659 L23: -0.8500 REMARK 3 S TENSOR REMARK 3 S11: -0.0304 S12: -0.0755 S13: 0.0230 REMARK 3 S21: -0.0222 S22: 0.1051 S23: 0.1281 REMARK 3 S31: 0.0376 S32: -0.2197 S33: -0.0747 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 310 REMARK 3 ORIGIN FOR THE GROUP (A): 48.7730 -14.6930 -14.3510 REMARK 3 T TENSOR REMARK 3 T11: 0.1542 T22: 0.0385 REMARK 3 T33: 0.0714 T12: 0.0364 REMARK 3 T13: -0.0501 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 0.0835 L22: 1.4160 REMARK 3 L33: 1.3993 L12: -0.3114 REMARK 3 L13: 0.1981 L23: -0.7999 REMARK 3 S TENSOR REMARK 3 S11: -0.0266 S12: -0.0423 S13: -0.0213 REMARK 3 S21: -0.0731 S22: 0.0947 S23: 0.1769 REMARK 3 S31: -0.2269 S32: -0.0373 S33: -0.0681 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6UL8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1000244796. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.17 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27463 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.680 REMARK 200 RESOLUTION RANGE LOW (A) : 105.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.65400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 5AR2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 85 MM TRIS, PH 7.5, 200 MM CALCIUM REMARK 280 CHLORIDE, 10% PEG400, 5% GLYCEROL, IN 24 WELL LINBRO TRAYS AT 22 REMARK 280 DEGREES C. CRYSTALS WERE FROZEN DIRECTLY FROM THE TRAY USING REMARK 280 PARAFFIN OIL AS A CRYOPROTECTANT., VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.50667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.25333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.25333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 70.50667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 52 REMARK 465 THR A 53 REMARK 465 PRO A 54 REMARK 465 ARG A 171 REMARK 465 MET A 172 REMARK 465 MET A 173 REMARK 465 SER A 174 REMARK 465 LEU A 175 REMARK 465 SER A 176 REMARK 465 GLN A 177 REMARK 465 SER A 178 REMARK 465 ARG A 179 REMARK 465 SER A 180 REMARK 465 SER A 181 REMARK 465 LYS A 182 REMARK 465 SER A 183 REMARK 465 ALA A 184 REMARK 465 PRO A 185 REMARK 465 GLU A 186 REMARK 465 GLY A 187 REMARK 465 PRO A 200 REMARK 465 GLY A 201 REMARK 465 GLN A 202 REMARK 465 LYS A 203 REMARK 465 SER A 204 REMARK 465 ARG A 205 REMARK 465 ALA A 206 REMARK 465 HIS B 50 REMARK 465 ILE B 51 REMARK 465 HIS B 52 REMARK 465 THR B 53 REMARK 465 PRO B 54 REMARK 465 LEU B 55 REMARK 465 ARG B 171 REMARK 465 MET B 172 REMARK 465 MET B 173 REMARK 465 SER B 174 REMARK 465 LEU B 175 REMARK 465 SER B 176 REMARK 465 GLN B 177 REMARK 465 SER B 178 REMARK 465 ARG B 179 REMARK 465 SER B 180 REMARK 465 SER B 181 REMARK 465 LYS B 182 REMARK 465 SER B 183 REMARK 465 ALA B 184 REMARK 465 PRO B 185 REMARK 465 GLU B 186 REMARK 465 GLY B 187 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 7 OG REMARK 470 ARG A 22 NE CZ NH1 NH2 REMARK 470 ARG A 26 NE CZ NH1 NH2 REMARK 470 SER A 29 OG REMARK 470 ARG A 36 NE CZ NH1 NH2 REMARK 470 HIS A 50 CG ND1 CD2 CE1 NE2 REMARK 470 ILE A 51 CG1 CG2 CD1 REMARK 470 LEU A 55 CG CD1 CD2 REMARK 470 LEU A 56 CG CD1 CD2 REMARK 470 ASP A 57 CG OD1 OD2 REMARK 470 ARG A 60 NE CZ NH1 NH2 REMARK 470 LYS A 61 CD CE NZ REMARK 470 GLU A 89 CG CD OE1 OE2 REMARK 470 LYS A 169 CG CD CE NZ REMARK 470 TRP A 170 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 170 CZ3 CH2 REMARK 470 GLU A 199 CG CD OE1 OE2 REMARK 470 ARG B 22 CD NE CZ NH1 NH2 REMARK 470 TYR B 23 CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 26 NE CZ NH1 NH2 REMARK 470 LEU B 56 CG CD1 CD2 REMARK 470 ASP B 57 CG OD1 OD2 REMARK 470 SER B 58 OG REMARK 470 GLU B 59 CG CD OE1 OE2 REMARK 470 ARG B 60 NE CZ NH1 NH2 REMARK 470 LYS B 61 CG CD CE NZ REMARK 470 GLU B 89 CG CD OE1 OE2 REMARK 470 LYS B 169 CG CD CE NZ REMARK 470 TRP B 170 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 170 CZ3 CH2 REMARK 470 GLN B 202 CG CD OE1 NE2 REMARK 470 LYS B 203 CG CD CE NZ REMARK 470 ARG B 205 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 208 CG1 CG2 CD1 REMARK 470 GLU B 230 CD OE1 OE2 REMARK 470 THR B 233 OG1 CG2 REMARK 470 ARG B 247 NE CZ NH1 NH2 REMARK 470 GLU B 299 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 21 95.20 -66.24 REMARK 500 ASP A 146 39.25 -146.49 REMARK 500 ASP A 164 84.99 65.76 REMARK 500 ASP A 231 45.46 -90.80 REMARK 500 ASP B 146 41.40 -153.77 REMARK 500 ASP B 164 77.15 65.81 REMARK 500 PHE B 165 36.90 -98.02 REMARK 500 ARG B 225 25.83 49.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 523 O REMARK 620 2 HOH A 544 O 86.1 REMARK 620 3 GLU B 112 O 149.5 113.7 REMARK 620 4 HOH B 518 O 140.2 67.7 70.3 REMARK 620 5 HOH B 528 O 73.7 87.0 84.0 130.8 REMARK 620 6 HOH B 530 O 81.6 163.0 73.5 128.8 78.4 REMARK 620 7 HOH B 556 O 101.5 111.5 92.6 64.4 160.9 82.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Q9J A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Q9J B 402 DBREF 6UL8 A 5 310 UNP O43353 RIPK2_HUMAN 5 310 DBREF 6UL8 B 5 310 UNP O43353 RIPK2_HUMAN 5 310 SEQADV 6UL8 SER A 7 UNP O43353 CYS 7 ENGINEERED MUTATION SEQADV 6UL8 CYS A 168 UNP O43353 SER 168 ENGINEERED MUTATION SEQADV 6UL8 SER B 7 UNP O43353 CYS 7 ENGINEERED MUTATION SEQADV 6UL8 CYS B 168 UNP O43353 SER 168 ENGINEERED MUTATION SEQRES 1 A 306 ALA ILE SER SER ALA LEU PRO THR ILE PRO TYR HIS LYS SEQRES 2 A 306 LEU ALA ASP LEU ARG TYR LEU SER ARG GLY ALA SER GLY SEQRES 3 A 306 THR VAL SER SER ALA ARG HIS ALA ASP TRP ARG VAL GLN SEQRES 4 A 306 VAL ALA VAL LYS HIS LEU HIS ILE HIS THR PRO LEU LEU SEQRES 5 A 306 ASP SER GLU ARG LYS ASP VAL LEU ARG GLU ALA GLU ILE SEQRES 6 A 306 LEU HIS LYS ALA ARG PHE SER TYR ILE LEU PRO ILE LEU SEQRES 7 A 306 GLY ILE CYS ASN GLU PRO GLU PHE LEU GLY ILE VAL THR SEQRES 8 A 306 GLU TYR MET PRO ASN GLY SER LEU ASN GLU LEU LEU HIS SEQRES 9 A 306 ARG LYS THR GLU TYR PRO ASP VAL ALA TRP PRO LEU ARG SEQRES 10 A 306 PHE ARG ILE LEU HIS GLU ILE ALA LEU GLY VAL ASN TYR SEQRES 11 A 306 LEU HIS ASN MET THR PRO PRO LEU LEU HIS HIS ASP LEU SEQRES 12 A 306 LYS THR GLN ASN ILE LEU LEU ASP ASN GLU PHE HIS VAL SEQRES 13 A 306 LYS ILE ALA ASP PHE GLY LEU CYS LYS TRP ARG MET MET SEQRES 14 A 306 SER LEU SER GLN SER ARG SER SER LYS SER ALA PRO GLU SEQRES 15 A 306 GLY GLY THR ILE ILE TYR MET PRO PRO GLU ASN TYR GLU SEQRES 16 A 306 PRO GLY GLN LYS SER ARG ALA SER ILE LYS HIS ASP ILE SEQRES 17 A 306 TYR SER TYR ALA VAL ILE THR TRP GLU VAL LEU SER ARG SEQRES 18 A 306 LYS GLN PRO PHE GLU ASP VAL THR ASN PRO LEU GLN ILE SEQRES 19 A 306 MET TYR SER VAL SER GLN GLY HIS ARG PRO VAL ILE ASN SEQRES 20 A 306 GLU GLU SER LEU PRO TYR ASP ILE PRO HIS ARG ALA ARG SEQRES 21 A 306 MET ILE SER LEU ILE GLU SER GLY TRP ALA GLN ASN PRO SEQRES 22 A 306 ASP GLU ARG PRO SER PHE LEU LYS CYS LEU ILE GLU LEU SEQRES 23 A 306 GLU PRO VAL LEU ARG THR PHE GLU GLU ILE THR PHE LEU SEQRES 24 A 306 GLU ALA VAL ILE GLN LEU LYS SEQRES 1 B 306 ALA ILE SER SER ALA LEU PRO THR ILE PRO TYR HIS LYS SEQRES 2 B 306 LEU ALA ASP LEU ARG TYR LEU SER ARG GLY ALA SER GLY SEQRES 3 B 306 THR VAL SER SER ALA ARG HIS ALA ASP TRP ARG VAL GLN SEQRES 4 B 306 VAL ALA VAL LYS HIS LEU HIS ILE HIS THR PRO LEU LEU SEQRES 5 B 306 ASP SER GLU ARG LYS ASP VAL LEU ARG GLU ALA GLU ILE SEQRES 6 B 306 LEU HIS LYS ALA ARG PHE SER TYR ILE LEU PRO ILE LEU SEQRES 7 B 306 GLY ILE CYS ASN GLU PRO GLU PHE LEU GLY ILE VAL THR SEQRES 8 B 306 GLU TYR MET PRO ASN GLY SER LEU ASN GLU LEU LEU HIS SEQRES 9 B 306 ARG LYS THR GLU TYR PRO ASP VAL ALA TRP PRO LEU ARG SEQRES 10 B 306 PHE ARG ILE LEU HIS GLU ILE ALA LEU GLY VAL ASN TYR SEQRES 11 B 306 LEU HIS ASN MET THR PRO PRO LEU LEU HIS HIS ASP LEU SEQRES 12 B 306 LYS THR GLN ASN ILE LEU LEU ASP ASN GLU PHE HIS VAL SEQRES 13 B 306 LYS ILE ALA ASP PHE GLY LEU CYS LYS TRP ARG MET MET SEQRES 14 B 306 SER LEU SER GLN SER ARG SER SER LYS SER ALA PRO GLU SEQRES 15 B 306 GLY GLY THR ILE ILE TYR MET PRO PRO GLU ASN TYR GLU SEQRES 16 B 306 PRO GLY GLN LYS SER ARG ALA SER ILE LYS HIS ASP ILE SEQRES 17 B 306 TYR SER TYR ALA VAL ILE THR TRP GLU VAL LEU SER ARG SEQRES 18 B 306 LYS GLN PRO PHE GLU ASP VAL THR ASN PRO LEU GLN ILE SEQRES 19 B 306 MET TYR SER VAL SER GLN GLY HIS ARG PRO VAL ILE ASN SEQRES 20 B 306 GLU GLU SER LEU PRO TYR ASP ILE PRO HIS ARG ALA ARG SEQRES 21 B 306 MET ILE SER LEU ILE GLU SER GLY TRP ALA GLN ASN PRO SEQRES 22 B 306 ASP GLU ARG PRO SER PHE LEU LYS CYS LEU ILE GLU LEU SEQRES 23 B 306 GLU PRO VAL LEU ARG THR PHE GLU GLU ILE THR PHE LEU SEQRES 24 B 306 GLU ALA VAL ILE GLN LEU LYS HET Q9J A 401 25 HET CA B 401 1 HET Q9J B 402 25 HETNAM Q9J (5S,6S,8R)-2-(1,3-BENZOTHIAZOL-5-YL)-6-HYDROXY-4,5,6,7, HETNAM 2 Q9J 8,9-HEXAHYDRO-5,8-METHANOPYRAZOLO[1,5-A][1, HETNAM 3 Q9J 3]DIAZOCINE-3-CARBOXAMIDE HETNAM CA CALCIUM ION FORMUL 3 Q9J 2(C17 H17 N5 O2 S) FORMUL 4 CA CA 2+ FORMUL 6 HOH *121(H2 O) HELIX 1 AA1 PRO A 14 HIS A 16 5 3 HELIX 2 AA2 LEU A 56 ALA A 73 1 18 HELIX 3 AA3 SER A 102 ARG A 109 1 8 HELIX 4 AA4 ALA A 117 ASN A 137 1 21 HELIX 5 AA5 LYS A 148 GLN A 150 5 3 HELIX 6 AA6 PRO A 194 TYR A 198 5 5 HELIX 7 AA7 HIS A 210 ARG A 225 1 16 HELIX 8 AA8 ASN A 234 GLN A 244 1 11 HELIX 9 AA9 HIS A 261 TRP A 273 1 13 HELIX 10 AB1 ASN A 276 ARG A 280 5 5 HELIX 11 AB2 SER A 282 ARG A 295 1 14 HELIX 12 AB3 GLU A 298 GLN A 308 1 11 HELIX 13 AB4 PRO B 14 HIS B 16 5 3 HELIX 14 AB5 ASP B 57 ALA B 73 1 17 HELIX 15 AB6 SER B 102 ARG B 109 1 8 HELIX 16 AB7 ALA B 117 ASN B 137 1 21 HELIX 17 AB8 LYS B 148 GLN B 150 5 3 HELIX 18 AB9 PRO B 194 TYR B 198 5 5 HELIX 19 AC1 GLY B 201 ALA B 206 1 6 HELIX 20 AC2 HIS B 210 ARG B 225 1 16 HELIX 21 AC3 ASN B 234 GLN B 244 1 11 HELIX 22 AC4 HIS B 261 TRP B 273 1 13 HELIX 23 AC5 ASN B 276 ARG B 280 5 5 HELIX 24 AC6 SER B 282 THR B 296 1 15 HELIX 25 AC7 GLU B 298 LYS B 310 1 13 SHEET 1 AA1 2 SER A 7 ALA A 9 0 SHEET 2 AA1 2 SER B 7 ALA B 9 -1 O SER B 8 N SER A 8 SHEET 1 AA2 5 LEU A 18 SER A 25 0 SHEET 2 AA2 5 THR A 31 HIS A 37 -1 O VAL A 32 N SER A 25 SHEET 3 AA2 5 GLN A 43 HIS A 48 -1 O HIS A 48 N THR A 31 SHEET 4 AA2 5 LEU A 91 GLU A 96 -1 O ILE A 93 N LYS A 47 SHEET 5 AA2 5 ILE A 81 ASN A 86 -1 N CYS A 85 O GLY A 92 SHEET 1 AA3 2 ILE A 152 LEU A 154 0 SHEET 2 AA3 2 VAL A 160 ILE A 162 -1 O LYS A 161 N LEU A 153 SHEET 1 AA4 5 LEU B 18 SER B 25 0 SHEET 2 AA4 5 THR B 31 HIS B 37 -1 O SER B 34 N ARG B 22 SHEET 3 AA4 5 GLN B 43 HIS B 48 -1 O VAL B 46 N SER B 33 SHEET 4 AA4 5 LEU B 91 GLU B 96 -1 O THR B 95 N ALA B 45 SHEET 5 AA4 5 ILE B 81 ASN B 86 -1 N CYS B 85 O GLY B 92 SHEET 1 AA5 2 ILE B 152 LEU B 154 0 SHEET 2 AA5 2 VAL B 160 ILE B 162 -1 O LYS B 161 N LEU B 153 LINK O HOH A 523 CA CA B 401 2544 1555 2.23 LINK O HOH A 544 CA CA B 401 2544 1555 2.55 LINK O GLU B 112 CA CA B 401 1555 1555 2.63 LINK CA CA B 401 O HOH B 518 1555 1555 2.36 LINK CA CA B 401 O HOH B 528 1555 1555 2.32 LINK CA CA B 401 O HOH B 530 1555 1555 2.39 LINK CA CA B 401 O HOH B 556 1555 1555 2.29 CISPEP 1 THR A 139 PRO A 140 0 -10.20 CISPEP 2 THR B 139 PRO B 140 0 -5.83 SITE 1 AC1 9 ALA A 45 GLU A 66 LEU A 79 THR A 95 SITE 2 AC1 9 GLU A 96 TYR A 97 MET A 98 LEU A 153 SITE 3 AC1 9 ASP A 164 SITE 1 AC2 7 HOH A 523 HOH A 544 GLU B 112 HOH B 518 SITE 2 AC2 7 HOH B 528 HOH B 530 HOH B 556 SITE 1 AC3 12 SER B 25 VAL B 32 ALA B 45 LYS B 47 SITE 2 AC3 12 GLU B 66 LEU B 79 THR B 95 GLU B 96 SITE 3 AC3 12 TYR B 97 MET B 98 LEU B 153 ASP B 164 CRYST1 125.677 125.677 105.760 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007957 0.004594 0.000000 0.00000 SCALE2 0.000000 0.009188 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009455 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.536427 -0.521220 -0.663758 54.42307 1 MTRIX2 2 -0.534449 -0.398888 0.745153 -9.31279 1 MTRIX3 2 -0.653154 0.754465 -0.064591 46.03080 1 MTRIX1 3 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 3 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 3 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 4 -0.530876 -0.481590 -0.697310 54.16464 1 MTRIX2 4 -0.558533 -0.420000 0.715291 -8.99788 1 MTRIX3 4 -0.637347 0.769202 -0.046016 45.90858 1 MTRIX1 5 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 5 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 5 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 6 -0.551111 -0.487396 -0.677290 55.49033 1 MTRIX2 6 -0.554545 -0.392570 0.733736 -8.49010 1 MTRIX3 6 -0.623504 0.779958 -0.053933 45.45376 1