HEADER TRANSFERASE 07-OCT-19 6ULD TITLE CRYSTAL STRUCTURE OF SERINE HYDROXYMETHYLTRANSFERASE FROM TITLE 2 MYCOBACTERIUM TUBERCULOSIS WITH BOUND PLP FORMING A SCHIFF BASE WITH TITLE 3 SUBSTRATE SERINE IN ONE MONOMER AND PLP FORMING A SCHIFF BASE WITH TITLE 4 PRODUCT GLYCINE IN THE OTHER MONOMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE HYDROXYMETHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SERINE METHYLASE, MYTUD.00783.A; COMPND 5 EC: 2.1.2.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: GLYA1, GLYA, ERS124361_03156; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS SSGCID, SERINE HYDROXYMETHYLTRANSFERASE, MYCOBACTERIUM TUBERCULOSIS, KEYWDS 2 PYRIDOXAL PHOSPHATE, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL KEYWDS 3 GENOMICS CENTER FOR INFECTIOUS DISEASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 11-OCT-23 6ULD 1 REMARK REVDAT 1 16-OCT-19 6ULD 0 JRNL AUTH D.M.DRANOW,J.ABENDROTH,D.D.LORIMER,P.S.HORANYI,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF SERINE HYDROXYMETHYLTRANSFERASE FROM JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS WITH BOUND PLP FORMING A SCHIFF JRNL TITL 3 BASE WITH SUBSTRATE SERINE IN ONE MONOMER AND PLP FORMING A JRNL TITL 4 SCHIFF BASE WITH PRODUCT GLYCINE IN THE OTHER MONOMER JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17RC1-3602 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 121428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.126 REMARK 3 R VALUE (WORKING SET) : 0.126 REMARK 3 FREE R VALUE : 0.163 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.680 REMARK 3 FREE R VALUE TEST SET COUNT : 2036 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.7600 - 3.7000 1.00 8226 126 0.1445 0.1747 REMARK 3 2 3.7000 - 2.9400 1.00 8048 171 0.1272 0.1583 REMARK 3 3 2.9400 - 2.5600 1.00 8047 125 0.1269 0.1683 REMARK 3 4 2.5600 - 2.3300 1.00 8059 137 0.1213 0.1470 REMARK 3 5 2.3300 - 2.1600 1.00 7990 134 0.1076 0.1313 REMARK 3 6 2.1600 - 2.0400 1.00 8015 95 0.1014 0.1617 REMARK 3 7 2.0400 - 1.9300 1.00 8002 142 0.0975 0.1266 REMARK 3 8 1.9300 - 1.8500 1.00 7992 159 0.1064 0.1752 REMARK 3 9 1.8500 - 1.7800 1.00 7962 122 0.1075 0.1718 REMARK 3 10 1.7800 - 1.7200 0.99 7918 140 0.1125 0.1566 REMARK 3 11 1.7200 - 1.6600 0.99 7994 128 0.1168 0.1659 REMARK 3 12 1.6600 - 1.6200 0.99 7896 138 0.1270 0.1879 REMARK 3 13 1.6200 - 1.5700 0.99 7977 133 0.1429 0.1818 REMARK 3 14 1.5700 - 1.5300 0.99 7817 144 0.1656 0.2253 REMARK 3 15 1.5300 - 1.5000 0.93 7449 142 0.1905 0.2264 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.118 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 6710 REMARK 3 ANGLE : 0.827 9181 REMARK 3 CHIRALITY : 0.049 1056 REMARK 3 PLANARITY : 0.006 1235 REMARK 3 DIHEDRAL : 15.703 4096 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ULD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1000244812. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 121439 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.088 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.6200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.36 REMARK 200 R MERGE FOR SHELL (I) : 0.51700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.230 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: 3H7F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MYTUD.00783.A.A1.PS00175 AT 20.2 REMARK 280 MG/ML, INCUBATED WITH 5 MM PYRAZINOIC ACID, MIXED 1:1 WITH 12.5% REMARK 280 (W/V) PEG-1000, 12.5% (W/V) PEG-3350, 12.5% (V/V) MPD, 0.1 M MES/ REMARK 280 IMIDAZOLE, PH=6.5, 0.02 M OF SODIUM L-GLUTAMATE, DL-ALANINE, REMARK 280 GLYCINE, DL-LYSINE HCL, DL-SERINE. TRAY: 311079G8, PUCK: VED0-8, REMARK 280 PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.00500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 MET A 9 REMARK 465 GLY A 10 REMARK 465 THR A 11 REMARK 465 LEU A 12 REMARK 465 GLU A 13 REMARK 465 ALA A 14 REMARK 465 GLN A 15 REMARK 465 THR A 16 REMARK 465 GLN A 17 REMARK 465 GLY A 18 REMARK 465 PRO A 19 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 MET B 9 REMARK 465 GLY B 10 REMARK 465 THR B 11 REMARK 465 LEU B 12 REMARK 465 GLU B 13 REMARK 465 ALA B 14 REMARK 465 GLN B 15 REMARK 465 THR B 16 REMARK 465 GLN B 17 REMARK 465 GLY B 18 REMARK 465 PRO B 19 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 139 CG CD1 CD2 REMARK 470 ARG A 150 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 183 CG CD OE1 OE2 REMARK 470 LYS A 325 CG CD CE NZ REMARK 470 ARG A 431 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 447 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 299 CG CD OE1 OE2 REMARK 470 ARG B 305 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 325 CG CD CE NZ REMARK 470 ARG B 428 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 441 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER B 347 O HOH B 601 2.01 REMARK 500 OE1 GLU B 75 O HOH B 602 2.03 REMARK 500 O LEU B 344 O HOH B 601 2.07 REMARK 500 OG SER A 503 O HOH A 601 2.17 REMARK 500 O HOH A 660 O HOH A 870 2.18 REMARK 500 O HOH B 878 O HOH B 884 2.19 REMARK 500 O HOH A 826 O HOH A 863 2.19 REMARK 500 O HOH B 870 O HOH B 908 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 74 46.40 -143.09 REMARK 500 ALA A 195 18.58 -150.55 REMARK 500 LYS A 248 -117.62 -93.74 REMARK 500 LYS A 248 -118.25 -92.94 REMARK 500 SER A 255 175.07 177.63 REMARK 500 VAL A 337 -159.12 -130.30 REMARK 500 THR A 380 166.25 64.95 REMARK 500 ALA B 74 44.42 -148.49 REMARK 500 ALA B 195 88.71 -152.35 REMARK 500 LYS B 248 -140.97 75.00 REMARK 500 LYS B 248 -119.21 -93.87 REMARK 500 SER B 255 177.44 177.63 REMARK 500 THR B 380 166.73 66.99 REMARK 500 ASP B 418 83.95 -68.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SER A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand PLP B 501 bound to SER A REMARK 800 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PLP A 501 and GLY A REMARK 800 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3H7F RELATED DB: PDB REMARK 900 SAME PROTEIN, PLP-MODIFIED LYSINE DBREF1 6ULD A 22 447 UNP A0A0T9NP28_MYCTX DBREF2 6ULD A A0A0T9NP28 1 426 DBREF1 6ULD B 22 447 UNP A0A0T9NP28_MYCTX DBREF2 6ULD B A0A0T9NP28 1 426 SEQADV 6ULD MET A 1 UNP A0A0T9NP2 INITIATING METHIONINE SEQADV 6ULD ALA A 2 UNP A0A0T9NP2 EXPRESSION TAG SEQADV 6ULD HIS A 3 UNP A0A0T9NP2 EXPRESSION TAG SEQADV 6ULD HIS A 4 UNP A0A0T9NP2 EXPRESSION TAG SEQADV 6ULD HIS A 5 UNP A0A0T9NP2 EXPRESSION TAG SEQADV 6ULD HIS A 6 UNP A0A0T9NP2 EXPRESSION TAG SEQADV 6ULD HIS A 7 UNP A0A0T9NP2 EXPRESSION TAG SEQADV 6ULD HIS A 8 UNP A0A0T9NP2 EXPRESSION TAG SEQADV 6ULD MET A 9 UNP A0A0T9NP2 EXPRESSION TAG SEQADV 6ULD GLY A 10 UNP A0A0T9NP2 EXPRESSION TAG SEQADV 6ULD THR A 11 UNP A0A0T9NP2 EXPRESSION TAG SEQADV 6ULD LEU A 12 UNP A0A0T9NP2 EXPRESSION TAG SEQADV 6ULD GLU A 13 UNP A0A0T9NP2 EXPRESSION TAG SEQADV 6ULD ALA A 14 UNP A0A0T9NP2 EXPRESSION TAG SEQADV 6ULD GLN A 15 UNP A0A0T9NP2 EXPRESSION TAG SEQADV 6ULD THR A 16 UNP A0A0T9NP2 EXPRESSION TAG SEQADV 6ULD GLN A 17 UNP A0A0T9NP2 EXPRESSION TAG SEQADV 6ULD GLY A 18 UNP A0A0T9NP2 EXPRESSION TAG SEQADV 6ULD PRO A 19 UNP A0A0T9NP2 EXPRESSION TAG SEQADV 6ULD GLY A 20 UNP A0A0T9NP2 EXPRESSION TAG SEQADV 6ULD SER A 21 UNP A0A0T9NP2 EXPRESSION TAG SEQADV 6ULD MET B 1 UNP A0A0T9NP2 INITIATING METHIONINE SEQADV 6ULD ALA B 2 UNP A0A0T9NP2 EXPRESSION TAG SEQADV 6ULD HIS B 3 UNP A0A0T9NP2 EXPRESSION TAG SEQADV 6ULD HIS B 4 UNP A0A0T9NP2 EXPRESSION TAG SEQADV 6ULD HIS B 5 UNP A0A0T9NP2 EXPRESSION TAG SEQADV 6ULD HIS B 6 UNP A0A0T9NP2 EXPRESSION TAG SEQADV 6ULD HIS B 7 UNP A0A0T9NP2 EXPRESSION TAG SEQADV 6ULD HIS B 8 UNP A0A0T9NP2 EXPRESSION TAG SEQADV 6ULD MET B 9 UNP A0A0T9NP2 EXPRESSION TAG SEQADV 6ULD GLY B 10 UNP A0A0T9NP2 EXPRESSION TAG SEQADV 6ULD THR B 11 UNP A0A0T9NP2 EXPRESSION TAG SEQADV 6ULD LEU B 12 UNP A0A0T9NP2 EXPRESSION TAG SEQADV 6ULD GLU B 13 UNP A0A0T9NP2 EXPRESSION TAG SEQADV 6ULD ALA B 14 UNP A0A0T9NP2 EXPRESSION TAG SEQADV 6ULD GLN B 15 UNP A0A0T9NP2 EXPRESSION TAG SEQADV 6ULD THR B 16 UNP A0A0T9NP2 EXPRESSION TAG SEQADV 6ULD GLN B 17 UNP A0A0T9NP2 EXPRESSION TAG SEQADV 6ULD GLY B 18 UNP A0A0T9NP2 EXPRESSION TAG SEQADV 6ULD PRO B 19 UNP A0A0T9NP2 EXPRESSION TAG SEQADV 6ULD GLY B 20 UNP A0A0T9NP2 EXPRESSION TAG SEQADV 6ULD SER B 21 UNP A0A0T9NP2 EXPRESSION TAG SEQRES 1 A 447 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 447 ALA GLN THR GLN GLY PRO GLY SER MET SER ALA PRO LEU SEQRES 3 A 447 ALA GLU VAL ASP PRO ASP ILE ALA GLU LEU LEU ALA LYS SEQRES 4 A 447 GLU LEU GLY ARG GLN ARG ASP THR LEU GLU MET ILE ALA SEQRES 5 A 447 SER GLU ASN PHE VAL PRO ARG ALA VAL LEU GLN ALA GLN SEQRES 6 A 447 GLY SER VAL LEU THR ASN LYS TYR ALA GLU GLY LEU PRO SEQRES 7 A 447 GLY ARG ARG TYR TYR GLY GLY CYS GLU HIS VAL ASP VAL SEQRES 8 A 447 VAL GLU ASN LEU ALA ARG ASP ARG ALA LYS ALA LEU PHE SEQRES 9 A 447 GLY ALA GLU PHE ALA ASN VAL GLN PRO HIS SER GLY ALA SEQRES 10 A 447 GLN ALA ASN ALA ALA VAL LEU HIS ALA LEU MET SER PRO SEQRES 11 A 447 GLY GLU ARG LEU LEU GLY LEU ASP LEU ALA ASN GLY GLY SEQRES 12 A 447 HIS LEU THR HIS GLY MET ARG LEU ASN PHE SER GLY LYS SEQRES 13 A 447 LEU TYR GLU ASN GLY PHE TYR GLY VAL ASP PRO ALA THR SEQRES 14 A 447 HIS LEU ILE ASP MET ASP ALA VAL ARG ALA THR ALA LEU SEQRES 15 A 447 GLU PHE ARG PRO LYS VAL ILE ILE ALA GLY TRP SER ALA SEQRES 16 A 447 TYR PRO ARG VAL LEU ASP PHE ALA ALA PHE ARG SER ILE SEQRES 17 A 447 ALA ASP GLU VAL GLY ALA LYS LEU LEU VAL ASP MET ALA SEQRES 18 A 447 HIS PHE ALA GLY LEU VAL ALA ALA GLY LEU HIS PRO SER SEQRES 19 A 447 PRO VAL PRO HIS ALA ASP VAL VAL SER THR THR VAL HIS SEQRES 20 A 447 LYS THR LEU GLY GLY GLY ARG SER GLY LEU ILE VAL GLY SEQRES 21 A 447 LYS GLN GLN TYR ALA LYS ALA ILE ASN SER ALA VAL PHE SEQRES 22 A 447 PRO GLY GLN GLN GLY GLY PRO LEU MET HIS VAL ILE ALA SEQRES 23 A 447 GLY LYS ALA VAL ALA LEU LYS ILE ALA ALA THR PRO GLU SEQRES 24 A 447 PHE ALA ASP ARG GLN ARG ARG THR LEU SER GLY ALA ARG SEQRES 25 A 447 ILE ILE ALA ASP ARG LEU MET ALA PRO ASP VAL ALA LYS SEQRES 26 A 447 ALA GLY VAL SER VAL VAL SER GLY GLY THR ASP VAL HIS SEQRES 27 A 447 LEU VAL LEU VAL ASP LEU ARG ASP SER PRO LEU ASP GLY SEQRES 28 A 447 GLN ALA ALA GLU ASP LEU LEU HIS GLU VAL GLY ILE THR SEQRES 29 A 447 VAL ASN ARG ASN ALA VAL PRO ASN ASP PRO ARG PRO PRO SEQRES 30 A 447 MET VAL THR SER GLY LEU ARG ILE GLY THR PRO ALA LEU SEQRES 31 A 447 ALA THR ARG GLY PHE GLY ASP THR GLU PHE THR GLU VAL SEQRES 32 A 447 ALA ASP ILE ILE ALA THR ALA LEU ALA THR GLY SER SER SEQRES 33 A 447 VAL ASP VAL SER ALA LEU LYS ASP ARG ALA THR ARG LEU SEQRES 34 A 447 ALA ARG ALA PHE PRO LEU TYR ASP GLY LEU GLU GLU TRP SEQRES 35 A 447 SER LEU VAL GLY ARG SEQRES 1 B 447 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 B 447 ALA GLN THR GLN GLY PRO GLY SER MET SER ALA PRO LEU SEQRES 3 B 447 ALA GLU VAL ASP PRO ASP ILE ALA GLU LEU LEU ALA LYS SEQRES 4 B 447 GLU LEU GLY ARG GLN ARG ASP THR LEU GLU MET ILE ALA SEQRES 5 B 447 SER GLU ASN PHE VAL PRO ARG ALA VAL LEU GLN ALA GLN SEQRES 6 B 447 GLY SER VAL LEU THR ASN LYS TYR ALA GLU GLY LEU PRO SEQRES 7 B 447 GLY ARG ARG TYR TYR GLY GLY CYS GLU HIS VAL ASP VAL SEQRES 8 B 447 VAL GLU ASN LEU ALA ARG ASP ARG ALA LYS ALA LEU PHE SEQRES 9 B 447 GLY ALA GLU PHE ALA ASN VAL GLN PRO HIS SER GLY ALA SEQRES 10 B 447 GLN ALA ASN ALA ALA VAL LEU HIS ALA LEU MET SER PRO SEQRES 11 B 447 GLY GLU ARG LEU LEU GLY LEU ASP LEU ALA ASN GLY GLY SEQRES 12 B 447 HIS LEU THR HIS GLY MET ARG LEU ASN PHE SER GLY LYS SEQRES 13 B 447 LEU TYR GLU ASN GLY PHE TYR GLY VAL ASP PRO ALA THR SEQRES 14 B 447 HIS LEU ILE ASP MET ASP ALA VAL ARG ALA THR ALA LEU SEQRES 15 B 447 GLU PHE ARG PRO LYS VAL ILE ILE ALA GLY TRP SER ALA SEQRES 16 B 447 TYR PRO ARG VAL LEU ASP PHE ALA ALA PHE ARG SER ILE SEQRES 17 B 447 ALA ASP GLU VAL GLY ALA LYS LEU LEU VAL ASP MET ALA SEQRES 18 B 447 HIS PHE ALA GLY LEU VAL ALA ALA GLY LEU HIS PRO SER SEQRES 19 B 447 PRO VAL PRO HIS ALA ASP VAL VAL SER THR THR VAL HIS SEQRES 20 B 447 LYS THR LEU GLY GLY GLY ARG SER GLY LEU ILE VAL GLY SEQRES 21 B 447 LYS GLN GLN TYR ALA LYS ALA ILE ASN SER ALA VAL PHE SEQRES 22 B 447 PRO GLY GLN GLN GLY GLY PRO LEU MET HIS VAL ILE ALA SEQRES 23 B 447 GLY LYS ALA VAL ALA LEU LYS ILE ALA ALA THR PRO GLU SEQRES 24 B 447 PHE ALA ASP ARG GLN ARG ARG THR LEU SER GLY ALA ARG SEQRES 25 B 447 ILE ILE ALA ASP ARG LEU MET ALA PRO ASP VAL ALA LYS SEQRES 26 B 447 ALA GLY VAL SER VAL VAL SER GLY GLY THR ASP VAL HIS SEQRES 27 B 447 LEU VAL LEU VAL ASP LEU ARG ASP SER PRO LEU ASP GLY SEQRES 28 B 447 GLN ALA ALA GLU ASP LEU LEU HIS GLU VAL GLY ILE THR SEQRES 29 B 447 VAL ASN ARG ASN ALA VAL PRO ASN ASP PRO ARG PRO PRO SEQRES 30 B 447 MET VAL THR SER GLY LEU ARG ILE GLY THR PRO ALA LEU SEQRES 31 B 447 ALA THR ARG GLY PHE GLY ASP THR GLU PHE THR GLU VAL SEQRES 32 B 447 ALA ASP ILE ILE ALA THR ALA LEU ALA THR GLY SER SER SEQRES 33 B 447 VAL ASP VAL SER ALA LEU LYS ASP ARG ALA THR ARG LEU SEQRES 34 B 447 ALA ARG ALA PHE PRO LEU TYR ASP GLY LEU GLU GLU TRP SEQRES 35 B 447 SER LEU VAL GLY ARG HET PLP A 501 15 HET GLY A 502 5 HET SER A 503 7 HET PLP B 501 15 HET MPD B 502 8 HET MPD B 503 8 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM GLY GLYCINE HETNAM SER SERINE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 3 PLP 2(C8 H10 N O6 P) FORMUL 4 GLY C2 H5 N O2 FORMUL 5 SER C3 H7 N O3 FORMUL 7 MPD 2(C6 H14 O2) FORMUL 9 HOH *594(H2 O) HELIX 1 AA1 PRO A 25 ASP A 30 1 6 HELIX 2 AA2 ASP A 30 THR A 47 1 18 HELIX 3 AA3 PRO A 58 GLY A 66 1 9 HELIX 4 AA4 SER A 67 LYS A 72 5 6 HELIX 5 AA5 CYS A 86 GLY A 105 1 20 HELIX 6 AA6 SER A 115 MET A 128 1 14 HELIX 7 AA7 LEU A 139 GLY A 142 5 4 HELIX 8 AA8 HIS A 144 GLY A 148 5 5 HELIX 9 AA9 ASN A 152 LEU A 157 1 6 HELIX 10 AB1 ASP A 173 ARG A 185 1 13 HELIX 11 AB2 ASP A 201 GLY A 213 1 13 HELIX 12 AB3 PHE A 223 ALA A 229 1 7 HELIX 13 AB4 TYR A 264 PHE A 273 1 10 HELIX 14 AB5 LEU A 281 ALA A 295 1 15 HELIX 15 AB6 THR A 297 MET A 319 1 23 HELIX 16 AB7 ALA A 320 LYS A 325 1 6 HELIX 17 AB8 SER A 332 GLY A 334 5 3 HELIX 18 AB9 ASP A 350 VAL A 361 1 12 HELIX 19 AC1 THR A 387 GLY A 394 1 8 HELIX 20 AC2 GLY A 396 GLY A 414 1 19 HELIX 21 AC3 SER A 415 VAL A 417 5 3 HELIX 22 AC4 ASP A 418 PHE A 433 1 16 HELIX 23 AC5 GLY A 438 TRP A 442 5 5 HELIX 24 AC6 PRO B 25 ASP B 30 1 6 HELIX 25 AC7 ASP B 30 THR B 47 1 18 HELIX 26 AC8 PRO B 58 GLY B 66 1 9 HELIX 27 AC9 SER B 67 LYS B 72 5 6 HELIX 28 AD1 CYS B 86 GLY B 105 1 20 HELIX 29 AD2 SER B 115 MET B 128 1 14 HELIX 30 AD3 LEU B 139 GLY B 142 5 4 HELIX 31 AD4 HIS B 144 GLY B 148 5 5 HELIX 32 AD5 ASN B 152 LEU B 157 1 6 HELIX 33 AD6 ASP B 173 ARG B 185 1 13 HELIX 34 AD7 ASP B 201 GLY B 213 1 13 HELIX 35 AD8 PHE B 223 ALA B 229 1 7 HELIX 36 AD9 HIS B 247 GLY B 251 5 5 HELIX 37 AE1 TYR B 264 PHE B 273 1 10 HELIX 38 AE2 LEU B 281 ALA B 295 1 15 HELIX 39 AE3 THR B 297 MET B 319 1 23 HELIX 40 AE4 ALA B 320 LYS B 325 1 6 HELIX 41 AE5 SER B 332 GLY B 334 5 3 HELIX 42 AE6 ASP B 350 GLY B 362 1 13 HELIX 43 AE7 THR B 387 GLY B 394 1 8 HELIX 44 AE8 GLY B 396 GLY B 414 1 19 HELIX 45 AE9 ASP B 418 PHE B 433 1 16 HELIX 46 AF1 GLY B 438 TRP B 442 5 5 SHEET 1 AA1 2 LEU A 48 GLU A 49 0 SHEET 2 AA1 2 ILE A 363 THR A 364 1 O THR A 364 N LEU A 48 SHEET 1 AA2 2 GLY A 76 LEU A 77 0 SHEET 2 AA2 2 ARG A 80 ARG A 81 -1 O ARG A 80 N LEU A 77 SHEET 1 AA3 7 PHE A 108 ASN A 110 0 SHEET 2 AA3 7 GLY A 256 GLY A 260 -1 O ILE A 258 N ASN A 110 SHEET 3 AA3 7 VAL A 241 THR A 245 -1 N VAL A 242 O VAL A 259 SHEET 4 AA3 7 LYS A 215 ASP A 219 1 N VAL A 218 O SER A 243 SHEET 5 AA3 7 VAL A 188 GLY A 192 1 N ILE A 189 O LYS A 215 SHEET 6 AA3 7 ARG A 133 LEU A 137 1 N LEU A 135 O ILE A 190 SHEET 7 AA3 7 GLU A 159 TYR A 163 1 O GLY A 161 N LEU A 134 SHEET 1 AA4 4 SER A 329 VAL A 330 0 SHEET 2 AA4 4 LEU A 339 ASP A 343 -1 O ASP A 343 N SER A 329 SHEET 3 AA4 4 GLY A 382 GLY A 386 -1 O LEU A 383 N VAL A 342 SHEET 4 AA4 4 ASN A 366 ARG A 367 -1 N ASN A 366 O ARG A 384 SHEET 1 AA5 2 LEU B 48 GLU B 49 0 SHEET 2 AA5 2 ILE B 363 THR B 364 1 O THR B 364 N LEU B 48 SHEET 1 AA6 2 GLY B 76 LEU B 77 0 SHEET 2 AA6 2 ARG B 80 ARG B 81 -1 O ARG B 80 N LEU B 77 SHEET 1 AA7 7 PHE B 108 ASN B 110 0 SHEET 2 AA7 7 GLY B 256 GLY B 260 -1 O ILE B 258 N ASN B 110 SHEET 3 AA7 7 VAL B 241 THR B 245 -1 N VAL B 242 O VAL B 259 SHEET 4 AA7 7 LYS B 215 ASP B 219 1 N VAL B 218 O SER B 243 SHEET 5 AA7 7 VAL B 188 GLY B 192 1 N ILE B 189 O LYS B 215 SHEET 6 AA7 7 ARG B 133 LEU B 137 1 N LEU B 135 O ILE B 190 SHEET 7 AA7 7 GLU B 159 TYR B 163 1 O GLY B 161 N LEU B 134 SHEET 1 AA8 4 SER B 329 VAL B 330 0 SHEET 2 AA8 4 LEU B 339 ASP B 343 -1 O ASP B 343 N SER B 329 SHEET 3 AA8 4 GLY B 382 GLY B 386 -1 O ILE B 385 N VAL B 340 SHEET 4 AA8 4 ASN B 366 ARG B 367 -1 N ASN B 366 O ARG B 384 LINK C4A PLP A 501 N GLY A 502 1555 1555 1.47 LINK N SER A 503 C4A PLP B 501 1555 1555 1.47 CISPEP 1 PHE A 273 PRO A 274 0 6.86 CISPEP 2 PHE B 273 PRO B 274 0 4.78 SITE 1 AC1 11 TYR A 73 GLU A 75 TYR A 83 HOH A 601 SITE 2 AC1 11 SER B 53 HIS B 144 SER B 194 HIS B 222 SITE 3 AC1 11 LYS B 248 ARG B 384 PLP B 501 SITE 1 AC2 6 GLY B 131 LYS B 156 LEU B 157 TYR B 158 SITE 2 AC2 6 GLU B 159 HOH B 707 SITE 1 AC3 10 LEU B 77 ARG B 80 TYR B 82 ASN B 269 SITE 2 AC3 10 SER B 270 PHE B 273 PRO B 274 SER B 416 SITE 3 AC3 10 HOH B 650 HOH B 674 SITE 1 AC4 19 TYR A 73 GLY A 278 GLY A 279 SER A 503 SITE 2 AC4 19 HOH A 612 SER B 115 GLY B 116 ALA B 117 SITE 3 AC4 19 HIS B 144 TRP B 193 SER B 194 ASP B 219 SITE 4 AC4 19 ALA B 221 HIS B 222 THR B 245 HIS B 247 SITE 5 AC4 19 LYS B 248 HOH B 715 HOH B 751 SITE 1 AC5 20 SER A 53 SER A 115 GLY A 116 ALA A 117 SITE 2 AC5 20 HIS A 144 TRP A 193 SER A 194 ASP A 219 SITE 3 AC5 20 ALA A 221 HIS A 222 THR A 245 HIS A 247 SITE 4 AC5 20 LYS A 248 ARG A 384 HOH A 633 HOH A 771 SITE 5 AC5 20 TYR B 73 TYR B 83 GLY B 278 GLY B 279 CRYST1 63.650 60.010 101.660 90.00 92.99 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015711 0.000000 0.000821 0.00000 SCALE2 0.000000 0.016664 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009850 0.00000