HEADER LIGASE 09-OCT-19 6UML TITLE STRUCTURAL BASIS FOR THALIDOMIDE TERATOGENICITY REVEALED BY THE TITLE 2 CEREBLON-DDB1-SALL4-POMALIDOMIDE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA DAMAGE-BINDING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DDB P127 SUBUNIT,DNA DAMAGE-BINDING PROTEIN A,DDBA,DAMAGE- COMPND 5 SPECIFIC DNA-BINDING PROTEIN 1,HBV X-ASSOCIATED PROTEIN 1,XAP-1,UV- COMPND 6 DAMAGED DNA-BINDING FACTOR,UV-DAMAGED DNA-BINDING PROTEIN 1,UV-DDB 1, COMPND 7 XPE-BINDING FACTOR,XPE-BF,XERODERMA PIGMENTOSUM GROUP E-COMPLEMENTING COMPND 8 PROTEIN,XPCE; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: PROTEIN CEREBLON; COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: SAL-LIKE PROTEIN 4; COMPND 16 CHAIN: E; COMPND 17 SYNONYM: ZINC FINGER PROTEIN 797,ZINC FINGER PROTEIN SALL4; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DDB1, XAP1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: CRBN, AD-006; SOURCE 13 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 GENE: SALL4, ZNF797; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CELMOD, CEREBLON-CRL4, UBIQUITIN LIGASE, C2H2 ZINC FINGER, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR T.L.CLAYTON,M.E.MATYSKIELA,B.E.PAGARIGAN,E.T.TRAN,P.P.CHAMBERLAIN REVDAT 3 11-OCT-23 6UML 1 REMARK REVDAT 2 22-APR-20 6UML 1 JRNL REVDAT 1 15-APR-20 6UML 0 JRNL AUTH M.E.MATYSKIELA,T.CLAYTON,X.ZHENG,C.MAYNE,E.TRAN,A.CARPENTER, JRNL AUTH 2 B.PAGARIGAN,J.MCDONALD,M.ROLFE,L.G.HAMANN,G.LU, JRNL AUTH 3 P.P.CHAMBERLAIN JRNL TITL CRYSTAL STRUCTURE OF THE SALL4-POMALIDOMIDE-CEREBLON-DDB1 JRNL TITL 2 COMPLEX. JRNL REF NAT.STRUCT.MOL.BIOL. V. 27 319 2020 JRNL REFN ESSN 1545-9985 JRNL PMID 32251415 JRNL DOI 10.1038/S41594-020-0405-9 REMARK 2 REMARK 2 RESOLUTION. 3.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 23576 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.630 REMARK 3 FREE R VALUE TEST SET COUNT : 1092 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.7000 - 7.1400 0.97 2825 133 0.1966 0.2544 REMARK 3 2 7.1400 - 5.6700 0.98 2803 143 0.2287 0.2613 REMARK 3 3 5.6700 - 4.9600 1.00 2859 133 0.1823 0.2602 REMARK 3 4 4.9600 - 4.5100 0.98 2802 117 0.1641 0.2286 REMARK 3 5 4.5100 - 4.1800 0.98 2806 139 0.1764 0.2195 REMARK 3 6 4.1800 - 3.9400 0.99 2763 165 0.2159 0.2953 REMARK 3 7 3.9400 - 3.7400 0.99 2851 124 0.2470 0.3405 REMARK 3 8 3.7400 - 3.5800 0.98 2775 138 0.2812 0.3514 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.512 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.413 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 79.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 85.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 11319 REMARK 3 ANGLE : 0.679 15386 REMARK 3 CHIRALITY : 0.046 1806 REMARK 3 PLANARITY : 0.006 1959 REMARK 3 DIHEDRAL : 6.335 6736 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 355 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.7778 -23.6905 -71.5912 REMARK 3 T TENSOR REMARK 3 T11: 0.6890 T22: 0.6772 REMARK 3 T33: 0.6778 T12: 0.1425 REMARK 3 T13: 0.1535 T23: -0.1397 REMARK 3 L TENSOR REMARK 3 L11: 1.4253 L22: 3.4598 REMARK 3 L33: 2.0905 L12: 1.2176 REMARK 3 L13: 0.2464 L23: 0.2419 REMARK 3 S TENSOR REMARK 3 S11: -0.0245 S12: 0.4464 S13: -0.3732 REMARK 3 S21: -0.5918 S22: -0.0576 S23: -0.3210 REMARK 3 S31: 0.3404 S32: 0.0738 S33: 0.0749 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 394 THROUGH 672 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.0234 -11.1077 -9.7633 REMARK 3 T TENSOR REMARK 3 T11: 0.4598 T22: 0.5447 REMARK 3 T33: 0.4523 T12: 0.0463 REMARK 3 T13: -0.1025 T23: -0.0308 REMARK 3 L TENSOR REMARK 3 L11: 1.7951 L22: 2.6909 REMARK 3 L33: 2.9366 L12: 1.0730 REMARK 3 L13: 0.4469 L23: 0.3904 REMARK 3 S TENSOR REMARK 3 S11: 0.1264 S12: 0.1844 S13: -0.0131 REMARK 3 S21: 0.1874 S22: -0.0305 S23: -0.1420 REMARK 3 S31: -0.1121 S32: 0.4213 S33: -0.0603 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 713 THROUGH 1081 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.0145 3.1076 -48.9387 REMARK 3 T TENSOR REMARK 3 T11: 0.5358 T22: 0.4308 REMARK 3 T33: 0.4307 T12: -0.0064 REMARK 3 T13: -0.0184 T23: 0.0512 REMARK 3 L TENSOR REMARK 3 L11: 2.3889 L22: 2.2976 REMARK 3 L33: 1.3503 L12: -0.0319 REMARK 3 L13: -0.3136 L23: -0.3459 REMARK 3 S TENSOR REMARK 3 S11: -0.0681 S12: 0.0803 S13: 0.1711 REMARK 3 S21: 0.2628 S22: 0.0373 S23: 0.0735 REMARK 3 S31: -0.2058 S32: -0.0107 S33: 0.0370 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 60 THROUGH 186) REMARK 3 ORIGIN FOR THE GROUP (A): 28.7174 24.2488 -93.8306 REMARK 3 T TENSOR REMARK 3 T11: 0.8489 T22: 0.7676 REMARK 3 T33: 0.9037 T12: -0.0848 REMARK 3 T13: -0.1375 T23: 0.2974 REMARK 3 L TENSOR REMARK 3 L11: 6.3057 L22: 7.6706 REMARK 3 L33: 6.0777 L12: 0.2758 REMARK 3 L13: 0.8215 L23: -1.8357 REMARK 3 S TENSOR REMARK 3 S11: -0.2706 S12: 0.7346 S13: 1.0946 REMARK 3 S21: 0.0597 S22: -0.5364 S23: -1.5495 REMARK 3 S31: -1.2079 S32: 0.7940 S33: 0.8342 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 200 THROUGH 317 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.6424 2.9701 -72.8585 REMARK 3 T TENSOR REMARK 3 T11: 0.6258 T22: 0.5761 REMARK 3 T33: 0.6191 T12: -0.0220 REMARK 3 T13: -0.0623 T23: 0.0620 REMARK 3 L TENSOR REMARK 3 L11: 3.2739 L22: 6.9445 REMARK 3 L33: 4.8493 L12: -2.0834 REMARK 3 L13: 1.8426 L23: -2.7627 REMARK 3 S TENSOR REMARK 3 S11: 0.3068 S12: -0.0343 S13: -0.1625 REMARK 3 S21: -0.9536 S22: 0.1610 S23: 0.3859 REMARK 3 S31: 0.2441 S32: -0.5419 S33: -0.4790 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 319 THROUGH 427) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8046 22.7988 -88.3753 REMARK 3 T TENSOR REMARK 3 T11: 0.7617 T22: 0.4582 REMARK 3 T33: 0.4241 T12: 0.0470 REMARK 3 T13: -0.1564 T23: 0.1012 REMARK 3 L TENSOR REMARK 3 L11: 6.9600 L22: 4.6720 REMARK 3 L33: 1.6003 L12: -1.4772 REMARK 3 L13: -1.3787 L23: 1.8716 REMARK 3 S TENSOR REMARK 3 S11: -0.2630 S12: -0.2662 S13: 0.0859 REMARK 3 S21: -0.2471 S22: 0.1110 S23: 0.1968 REMARK 3 S31: -0.0258 S32: 0.1029 S33: 0.1178 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 408 THROUGH 421 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.8262 38.7750 -98.5063 REMARK 3 T TENSOR REMARK 3 T11: 1.2508 T22: 0.8600 REMARK 3 T33: 1.0217 T12: -0.0909 REMARK 3 T13: 0.0864 T23: 0.1685 REMARK 3 L TENSOR REMARK 3 L11: 1.6777 L22: 7.4168 REMARK 3 L33: 2.7882 L12: 2.8740 REMARK 3 L13: -2.1200 L23: -3.2000 REMARK 3 S TENSOR REMARK 3 S11: 0.7694 S12: 0.8190 S13: 1.4007 REMARK 3 S21: -0.5351 S22: 0.5022 S23: 0.5335 REMARK 3 S31: -0.1850 S32: -0.5924 S33: -1.0902 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 422 THROUGH 432 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3937 43.2726 -91.6322 REMARK 3 T TENSOR REMARK 3 T11: 0.9592 T22: 1.0187 REMARK 3 T33: 0.8512 T12: -0.2582 REMARK 3 T13: 0.2163 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 3.2794 L22: 8.1533 REMARK 3 L33: 5.2128 L12: 1.3480 REMARK 3 L13: -3.0969 L23: 2.8970 REMARK 3 S TENSOR REMARK 3 S11: 1.1856 S12: 0.1284 S13: 0.9498 REMARK 3 S21: 0.3063 S22: 0.9462 S23: -0.4594 REMARK 3 S31: -1.1695 S32: 0.2671 S33: -1.9558 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UML COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1000244837. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23629 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.580 REMARK 200 RESOLUTION RANGE LOW (A) : 38.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.16370 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.0400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.56990 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4TZ4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG MME 500, 8% PEG 20K, 210MM REMARK 280 CALCIUM ACETATE, 100MM TRIS PH 7.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 63.86250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 47 REMARK 465 GLY A 48 REMARK 465 SER A 94 REMARK 465 GLY A 95 REMARK 465 GLU A 96 REMARK 465 GLN A 370 REMARK 465 GLY A 371 REMARK 465 GLY A 547 REMARK 465 ASP A 548 REMARK 465 SER A 549 REMARK 465 ASN A 550 REMARK 465 LEU A 577 REMARK 465 ARG A 626 REMARK 465 SER A 746 REMARK 465 GLY A 747 REMARK 465 GLY A 748 REMARK 465 SER A 772 REMARK 465 SER A 773 REMARK 465 SER A 774 REMARK 465 THR A 775 REMARK 465 ALA A 776 REMARK 465 PRO A 777 REMARK 465 HIS A 778 REMARK 465 GLU A 779 REMARK 465 THR A 780 REMARK 465 SER A 781 REMARK 465 PHE A 782 REMARK 465 GLY A 783 REMARK 465 SER A 981 REMARK 465 ALA A 982 REMARK 465 ALA A 983 REMARK 465 THR A 984 REMARK 465 THR A 985 REMARK 465 ASP A 986 REMARK 465 MET A 1014 REMARK 465 GLN A 1015 REMARK 465 ASN A 1016 REMARK 465 LEU A 1017 REMARK 465 GLY A 1018 REMARK 465 GLU A 1019 REMARK 465 THR A 1020 REMARK 465 SER A 1021 REMARK 465 THR A 1022 REMARK 465 PRO A 1023 REMARK 465 GLU A 1079 REMARK 465 ARG A 1080 REMARK 465 GLY A 1117 REMARK 465 SER A 1118 REMARK 465 GLY A 1119 REMARK 465 MET A 1120 REMARK 465 GLY C 37 REMARK 465 SER C 38 REMARK 465 MET C 39 REMARK 465 GLU C 40 REMARK 465 ALA C 41 REMARK 465 LYS C 42 REMARK 465 LYS C 43 REMARK 465 PRO C 44 REMARK 465 ASN C 45 REMARK 465 ILE C 46 REMARK 465 ILE C 47 REMARK 465 GLY C 61 REMARK 465 ALA C 62 REMARK 465 ASP C 63 REMARK 465 MET C 64 REMARK 465 GLU C 65 REMARK 465 GLU C 66 REMARK 465 ALA C 124 REMARK 465 ASN C 127 REMARK 465 VAL C 128 REMARK 465 GLN C 129 REMARK 465 GLU C 130 REMARK 465 ARG C 131 REMARK 465 VAL C 167 REMARK 465 LEU C 168 REMARK 465 GLU C 169 REMARK 465 LEU C 170 REMARK 465 ARG C 171 REMARK 465 THR C 172 REMARK 465 GLN C 173 REMARK 465 SER C 174 REMARK 465 ASP C 175 REMARK 465 GLY C 176 REMARK 465 ILE C 177 REMARK 465 GLN C 178 REMARK 465 PRO C 209 REMARK 465 SER C 210 REMARK 465 LYS C 211 REMARK 465 PRO C 212 REMARK 465 VAL C 213 REMARK 465 SER C 214 REMARK 465 ARG C 215 REMARK 465 GLU C 216 REMARK 465 ASP C 217 REMARK 465 GLN C 218 REMARK 465 CYS C 219 REMARK 465 GLU C 266 REMARK 465 ASN C 267 REMARK 465 LEU C 268 REMARK 465 LYS C 269 REMARK 465 ASP C 270 REMARK 465 ASP C 271 REMARK 465 SER C 272 REMARK 465 ASP C 428 REMARK 465 THR C 429 REMARK 465 GLU C 430 REMARK 465 ASP C 431 REMARK 465 GLU C 432 REMARK 465 ILE C 433 REMARK 465 SER C 434 REMARK 465 PRO C 435 REMARK 465 ASP C 436 REMARK 465 LYS C 437 REMARK 465 VAL C 438 REMARK 465 ILE C 439 REMARK 465 LEU C 440 REMARK 465 CYS C 441 REMARK 465 LEU C 442 REMARK 465 THR E 405 REMARK 465 GLY E 406 REMARK 465 GLU E 407 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 24 OG1 CG2 REMARK 470 GLU A 27 CG CD OE1 OE2 REMARK 470 ARG A 38 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 70 CG CD CE NZ REMARK 470 LYS A 74 CG CD CE NZ REMARK 470 GLU A 90 CG CD OE1 OE2 REMARK 470 LYS A 92 CG CD CE NZ REMARK 470 GLN A 93 CG CD OE1 NE2 REMARK 470 ARG A 111 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 112 CG1 CG2 CD1 REMARK 470 ARG A 114 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 131 CG1 CG2 CD1 REMARK 470 LEU A 133 CG CD1 CD2 REMARK 470 ARG A 147 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 148 CG OD1 OD2 REMARK 470 LYS A 150 CG CD CE NZ REMARK 470 LYS A 153 CG CD CE NZ REMARK 470 ARG A 158 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 174 CG CD OE1 NE2 REMARK 470 GLN A 186 CG CD OE1 NE2 REMARK 470 GLN A 209 CG CD OE1 NE2 REMARK 470 GLU A 210 CG CD OE1 OE2 REMARK 470 ASN A 211 CG OD1 ND2 REMARK 470 GLN A 234 CG CD OE1 NE2 REMARK 470 LYS A 244 CG CD CE NZ REMARK 470 TYR A 245 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 246 CG CD1 CD2 REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 VAL A 295 CG1 CG2 REMARK 470 ARG A 301 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 319 CG OD1 ND2 REMARK 470 VAL A 321 CG1 CG2 REMARK 470 ASN A 341 CG OD1 ND2 REMARK 470 GLU A 342 CG CD OE1 OE2 REMARK 470 GLN A 343 CG CD OE1 NE2 REMARK 470 GLU A 368 CG CD OE1 OE2 REMARK 470 GLN A 372 CG CD OE1 NE2 REMARK 470 ARG A 391 CG CD NE CZ NH1 NH2 REMARK 470 SER A 415 OG REMARK 470 ARG A 419 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 420 O CG CD OE1 OE2 REMARK 470 GLN A 494 CG CD OE1 NE2 REMARK 470 HIS A 531 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 537 CG CD OE1 OE2 REMARK 470 LEU A 552 CG CD1 CD2 REMARK 470 THR A 562 OG1 CG2 REMARK 470 LYS A 570 CG CD CE NZ REMARK 470 GLU A 575 CG CD OE1 OE2 REMARK 470 LEU A 576 CG CD1 CD2 REMARK 470 HIS A 578 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 585 CG CD OE1 OE2 REMARK 470 ARG A 589 CG CD NE CZ NH1 NH2 REMARK 470 SER A 590 OG REMARK 470 GLU A 597 CG CD OE1 OE2 REMARK 470 ASN A 617 CG OD1 ND2 REMARK 470 GLU A 619 CG CD OE1 OE2 REMARK 470 THR A 620 OG1 CG2 REMARK 470 LEU A 622 CG CD1 CD2 REMARK 470 LYS A 627 CG CD CE NZ REMARK 470 GLN A 634 CG CD OE1 NE2 REMARK 470 ARG A 642 CG CD NE CZ NH1 NH2 REMARK 470 SER A 643 OG REMARK 470 LEU A 644 CG CD1 CD2 REMARK 470 SER A 645 OG REMARK 470 ASP A 654 CG OD1 OD2 REMARK 470 ARG A 655 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 665 CG CD CE NZ REMARK 470 SER A 669 OG REMARK 470 LYS A 674 CG CD CE NZ REMARK 470 GLU A 675 CG CD OE1 OE2 REMARK 470 THR A 703 OG1 CG2 REMARK 470 GLU A 706 CG CD OE1 OE2 REMARK 470 GLN A 708 CG CD OE1 NE2 REMARK 470 LYS A 709 CG CD CE NZ REMARK 470 SER A 762 OG REMARK 470 LYS A 769 CG CD CE NZ REMARK 470 LEU A 770 CG CD1 CD2 REMARK 470 GLU A 784 CG CD OE1 OE2 REMARK 470 LYS A 844 CG CD CE NZ REMARK 470 ASP A 855 CG OD1 OD2 REMARK 470 LYS A 857 CG CD CE NZ REMARK 470 LYS A 867 CG CD CE NZ REMARK 470 GLU A 896 CG CD OE1 OE2 REMARK 470 LYS A1081 CG CD CE NZ REMARK 470 GLN A1106 CG CD OE1 NE2 REMARK 470 ASN A1111 CG OD1 ND2 REMARK 470 GLN A1113 CG CD OE1 NE2 REMARK 470 TYR A1114 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A1115 CG OD1 OD2 REMARK 470 LYS A1121 CG CD CE NZ REMARK 470 GLU A1123 CG CD OE1 OE2 REMARK 470 HIS C 68 CG ND1 CD2 CE1 NE2 REMARK 470 ARG C 70 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 111 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 116 CG CD CE NZ REMARK 470 SER C 126 OG REMARK 470 GLU C 132 CG CD OE1 OE2 REMARK 470 ARG C 145 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 166 CG CD CE NZ REMARK 470 GLN C 183 CG CD OE1 NE2 REMARK 470 TYR C 221 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS C 226 CG CD CE NZ REMARK 470 LYS C 229 CG CD CE NZ REMARK 470 ARG C 230 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 262 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 317 CG CD CE NZ REMARK 470 ARG E 408 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 422 CG CD CE NZ REMARK 470 HIS E 430 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 36 -118.50 57.98 REMARK 500 VAL A 52 -54.77 -139.27 REMARK 500 TYR A 58 49.10 -95.80 REMARK 500 ILE A 61 108.66 -58.33 REMARK 500 LEU A 145 37.10 -79.80 REMARK 500 ASP A 148 56.21 -106.52 REMARK 500 ILE A 165 -71.10 -91.37 REMARK 500 GLU A 213 154.45 -39.82 REMARK 500 PRO A 223 -165.78 -71.09 REMARK 500 ASN A 241 107.40 -164.21 REMARK 500 ASP A 292 31.33 -153.80 REMARK 500 ILE A 310 107.46 -58.35 REMARK 500 GLU A 312 -50.21 -122.57 REMARK 500 SER A 345 121.37 -34.56 REMARK 500 ILE A 359 98.17 -54.82 REMARK 500 LEU A 367 -60.45 -95.11 REMARK 500 PHE A 382 -138.46 62.80 REMARK 500 ASP A 423 14.36 -153.14 REMARK 500 PHE A 459 146.61 -170.51 REMARK 500 PRO A 483 81.55 24.63 REMARK 500 ASN A 504 -156.49 -145.64 REMARK 500 ALA A 511 113.00 -164.99 REMARK 500 ILE A 529 -50.57 -135.53 REMARK 500 ILE A 543 34.54 -141.83 REMARK 500 GLU A 597 -124.75 49.63 REMARK 500 LEU A 644 -139.63 61.38 REMARK 500 SER A 653 -163.46 170.24 REMARK 500 LYS A 674 -167.65 -68.65 REMARK 500 ASN A 683 74.84 -117.41 REMARK 500 SER A 697 -33.95 -135.34 REMARK 500 TYR A 718 14.82 59.85 REMARK 500 ASP A 744 -129.44 48.45 REMARK 500 SER A 755 -168.41 -120.39 REMARK 500 SER A 767 73.33 53.17 REMARK 500 ASN A 810 19.28 59.00 REMARK 500 ALA A 834 118.68 -161.52 REMARK 500 ASP A 855 -133.34 58.75 REMARK 500 LYS A 864 98.33 -164.59 REMARK 500 ASN A 885 -118.88 53.03 REMARK 500 GLU A 896 2.34 -69.29 REMARK 500 ALA A 911 78.10 -66.81 REMARK 500 LYS A 917 109.52 -161.21 REMARK 500 ARG A 928 -9.56 68.76 REMARK 500 ARG A 947 135.38 -174.63 REMARK 500 THR A1082 116.98 -160.88 REMARK 500 ASN A1111 65.71 -112.42 REMARK 500 GLU A1123 104.89 -50.34 REMARK 500 LYS C 116 -121.77 68.64 REMARK 500 PRO C 191 -171.74 -67.73 REMARK 500 THR C 238 -169.32 -109.69 REMARK 500 REMARK 500 THIS ENTRY HAS 54 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 323 SG REMARK 620 2 CYS C 326 SG 102.7 REMARK 620 3 CYS C 391 SG 95.1 103.7 REMARK 620 4 CYS C 394 SG 98.5 144.8 102.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS E 412 SG REMARK 620 2 CYS E 415 SG 109.5 REMARK 620 3 HIS E 428 NE2 120.1 106.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue Y70 C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN E 501 DBREF 6UML A 1 1140 UNP Q16531 DDB1_HUMAN 1 1140 DBREF 6UML C 40 442 UNP Q96SW2 CRBN_HUMAN 40 442 DBREF 6UML E 405 432 UNP Q9UJQ4 SALL4_HUMAN 405 432 SEQADV 6UML GLY C 37 UNP Q96SW2 EXPRESSION TAG SEQADV 6UML SER C 38 UNP Q96SW2 EXPRESSION TAG SEQADV 6UML MET C 39 UNP Q96SW2 EXPRESSION TAG SEQRES 1 A 1140 MET SER TYR ASN TYR VAL VAL THR ALA GLN LYS PRO THR SEQRES 2 A 1140 ALA VAL ASN GLY CYS VAL THR GLY HIS PHE THR SER ALA SEQRES 3 A 1140 GLU ASP LEU ASN LEU LEU ILE ALA LYS ASN THR ARG LEU SEQRES 4 A 1140 GLU ILE TYR VAL VAL THR ALA GLU GLY LEU ARG PRO VAL SEQRES 5 A 1140 LYS GLU VAL GLY MET TYR GLY LYS ILE ALA VAL MET GLU SEQRES 6 A 1140 LEU PHE ARG PRO LYS GLY GLU SER LYS ASP LEU LEU PHE SEQRES 7 A 1140 ILE LEU THR ALA LYS TYR ASN ALA CYS ILE LEU GLU TYR SEQRES 8 A 1140 LYS GLN SER GLY GLU SER ILE ASP ILE ILE THR ARG ALA SEQRES 9 A 1140 HIS GLY ASN VAL GLN ASP ARG ILE GLY ARG PRO SER GLU SEQRES 10 A 1140 THR GLY ILE ILE GLY ILE ILE ASP PRO GLU CYS ARG MET SEQRES 11 A 1140 ILE GLY LEU ARG LEU TYR ASP GLY LEU PHE LYS VAL ILE SEQRES 12 A 1140 PRO LEU ASP ARG ASP ASN LYS GLU LEU LYS ALA PHE ASN SEQRES 13 A 1140 ILE ARG LEU GLU GLU LEU HIS VAL ILE ASP VAL LYS PHE SEQRES 14 A 1140 LEU TYR GLY CYS GLN ALA PRO THR ILE CYS PHE VAL TYR SEQRES 15 A 1140 GLN ASP PRO GLN GLY ARG HIS VAL LYS THR TYR GLU VAL SEQRES 16 A 1140 SER LEU ARG GLU LYS GLU PHE ASN LYS GLY PRO TRP LYS SEQRES 17 A 1140 GLN GLU ASN VAL GLU ALA GLU ALA SER MET VAL ILE ALA SEQRES 18 A 1140 VAL PRO GLU PRO PHE GLY GLY ALA ILE ILE ILE GLY GLN SEQRES 19 A 1140 GLU SER ILE THR TYR HIS ASN GLY ASP LYS TYR LEU ALA SEQRES 20 A 1140 ILE ALA PRO PRO ILE ILE LYS GLN SER THR ILE VAL CYS SEQRES 21 A 1140 HIS ASN ARG VAL ASP PRO ASN GLY SER ARG TYR LEU LEU SEQRES 22 A 1140 GLY ASP MET GLU GLY ARG LEU PHE MET LEU LEU LEU GLU SEQRES 23 A 1140 LYS GLU GLU GLN MET ASP GLY THR VAL THR LEU LYS ASP SEQRES 24 A 1140 LEU ARG VAL GLU LEU LEU GLY GLU THR SER ILE ALA GLU SEQRES 25 A 1140 CYS LEU THR TYR LEU ASP ASN GLY VAL VAL PHE VAL GLY SEQRES 26 A 1140 SER ARG LEU GLY ASP SER GLN LEU VAL LYS LEU ASN VAL SEQRES 27 A 1140 ASP SER ASN GLU GLN GLY SER TYR VAL VAL ALA MET GLU SEQRES 28 A 1140 THR PHE THR ASN LEU GLY PRO ILE VAL ASP MET CYS VAL SEQRES 29 A 1140 VAL ASP LEU GLU ARG GLN GLY GLN GLY GLN LEU VAL THR SEQRES 30 A 1140 CYS SER GLY ALA PHE LYS GLU GLY SER LEU ARG ILE ILE SEQRES 31 A 1140 ARG ASN GLY ILE GLY ILE HIS GLU HIS ALA SER ILE ASP SEQRES 32 A 1140 LEU PRO GLY ILE LYS GLY LEU TRP PRO LEU ARG SER ASP SEQRES 33 A 1140 PRO ASN ARG GLU THR ASP ASP THR LEU VAL LEU SER PHE SEQRES 34 A 1140 VAL GLY GLN THR ARG VAL LEU MET LEU ASN GLY GLU GLU SEQRES 35 A 1140 VAL GLU GLU THR GLU LEU MET GLY PHE VAL ASP ASP GLN SEQRES 36 A 1140 GLN THR PHE PHE CYS GLY ASN VAL ALA HIS GLN GLN LEU SEQRES 37 A 1140 ILE GLN ILE THR SER ALA SER VAL ARG LEU VAL SER GLN SEQRES 38 A 1140 GLU PRO LYS ALA LEU VAL SER GLU TRP LYS GLU PRO GLN SEQRES 39 A 1140 ALA LYS ASN ILE SER VAL ALA SER CYS ASN SER SER GLN SEQRES 40 A 1140 VAL VAL VAL ALA VAL GLY ARG ALA LEU TYR TYR LEU GLN SEQRES 41 A 1140 ILE HIS PRO GLN GLU LEU ARG GLN ILE SER HIS THR GLU SEQRES 42 A 1140 MET GLU HIS GLU VAL ALA CYS LEU ASP ILE THR PRO LEU SEQRES 43 A 1140 GLY ASP SER ASN GLY LEU SER PRO LEU CYS ALA ILE GLY SEQRES 44 A 1140 LEU TRP THR ASP ILE SER ALA ARG ILE LEU LYS LEU PRO SEQRES 45 A 1140 SER PHE GLU LEU LEU HIS LYS GLU MET LEU GLY GLY GLU SEQRES 46 A 1140 ILE ILE PRO ARG SER ILE LEU MET THR THR PHE GLU SER SEQRES 47 A 1140 SER HIS TYR LEU LEU CYS ALA LEU GLY ASP GLY ALA LEU SEQRES 48 A 1140 PHE TYR PHE GLY LEU ASN ILE GLU THR GLY LEU LEU SER SEQRES 49 A 1140 ASP ARG LYS LYS VAL THR LEU GLY THR GLN PRO THR VAL SEQRES 50 A 1140 LEU ARG THR PHE ARG SER LEU SER THR THR ASN VAL PHE SEQRES 51 A 1140 ALA CYS SER ASP ARG PRO THR VAL ILE TYR SER SER ASN SEQRES 52 A 1140 HIS LYS LEU VAL PHE SER ASN VAL ASN LEU LYS GLU VAL SEQRES 53 A 1140 ASN TYR MET CYS PRO LEU ASN SER ASP GLY TYR PRO ASP SEQRES 54 A 1140 SER LEU ALA LEU ALA ASN ASN SER THR LEU THR ILE GLY SEQRES 55 A 1140 THR ILE ASP GLU ILE GLN LYS LEU HIS ILE ARG THR VAL SEQRES 56 A 1140 PRO LEU TYR GLU SER PRO ARG LYS ILE CYS TYR GLN GLU SEQRES 57 A 1140 VAL SER GLN CYS PHE GLY VAL LEU SER SER ARG ILE GLU SEQRES 58 A 1140 VAL GLN ASP THR SER GLY GLY THR THR ALA LEU ARG PRO SEQRES 59 A 1140 SER ALA SER THR GLN ALA LEU SER SER SER VAL SER SER SEQRES 60 A 1140 SER LYS LEU PHE SER SER SER THR ALA PRO HIS GLU THR SEQRES 61 A 1140 SER PHE GLY GLU GLU VAL GLU VAL HIS ASN LEU LEU ILE SEQRES 62 A 1140 ILE ASP GLN HIS THR PHE GLU VAL LEU HIS ALA HIS GLN SEQRES 63 A 1140 PHE LEU GLN ASN GLU TYR ALA LEU SER LEU VAL SER CYS SEQRES 64 A 1140 LYS LEU GLY LYS ASP PRO ASN THR TYR PHE ILE VAL GLY SEQRES 65 A 1140 THR ALA MET VAL TYR PRO GLU GLU ALA GLU PRO LYS GLN SEQRES 66 A 1140 GLY ARG ILE VAL VAL PHE GLN TYR SER ASP GLY LYS LEU SEQRES 67 A 1140 GLN THR VAL ALA GLU LYS GLU VAL LYS GLY ALA VAL TYR SEQRES 68 A 1140 SER MET VAL GLU PHE ASN GLY LYS LEU LEU ALA SER ILE SEQRES 69 A 1140 ASN SER THR VAL ARG LEU TYR GLU TRP THR THR GLU LYS SEQRES 70 A 1140 GLU LEU ARG THR GLU CYS ASN HIS TYR ASN ASN ILE MET SEQRES 71 A 1140 ALA LEU TYR LEU LYS THR LYS GLY ASP PHE ILE LEU VAL SEQRES 72 A 1140 GLY ASP LEU MET ARG SER VAL LEU LEU LEU ALA TYR LYS SEQRES 73 A 1140 PRO MET GLU GLY ASN PHE GLU GLU ILE ALA ARG ASP PHE SEQRES 74 A 1140 ASN PRO ASN TRP MET SER ALA VAL GLU ILE LEU ASP ASP SEQRES 75 A 1140 ASP ASN PHE LEU GLY ALA GLU ASN ALA PHE ASN LEU PHE SEQRES 76 A 1140 VAL CYS GLN LYS ASP SER ALA ALA THR THR ASP GLU GLU SEQRES 77 A 1140 ARG GLN HIS LEU GLN GLU VAL GLY LEU PHE HIS LEU GLY SEQRES 78 A 1140 GLU PHE VAL ASN VAL PHE CYS HIS GLY SER LEU VAL MET SEQRES 79 A 1140 GLN ASN LEU GLY GLU THR SER THR PRO THR GLN GLY SER SEQRES 80 A 1140 VAL LEU PHE GLY THR VAL ASN GLY MET ILE GLY LEU VAL SEQRES 81 A 1140 THR SER LEU SER GLU SER TRP TYR ASN LEU LEU LEU ASP SEQRES 82 A 1140 MET GLN ASN ARG LEU ASN LYS VAL ILE LYS SER VAL GLY SEQRES 83 A 1140 LYS ILE GLU HIS SER PHE TRP ARG SER PHE HIS THR GLU SEQRES 84 A 1140 ARG LYS THR GLU PRO ALA THR GLY PHE ILE ASP GLY ASP SEQRES 85 A 1140 LEU ILE GLU SER PHE LEU ASP ILE SER ARG PRO LYS MET SEQRES 86 A 1140 GLN GLU VAL VAL ALA ASN LEU GLN TYR ASP ASP GLY SER SEQRES 87 A 1140 GLY MET LYS ARG GLU ALA THR ALA ASP ASP LEU ILE LYS SEQRES 88 A 1140 VAL VAL GLU GLU LEU THR ARG ILE HIS SEQRES 1 C 406 GLY SER MET GLU ALA LYS LYS PRO ASN ILE ILE ASN PHE SEQRES 2 C 406 ASP THR SER LEU PRO THR SER HIS THR TYR LEU GLY ALA SEQRES 3 C 406 ASP MET GLU GLU PHE HIS GLY ARG THR LEU HIS ASP ASP SEQRES 4 C 406 ASP SER CYS GLN VAL ILE PRO VAL LEU PRO GLN VAL MET SEQRES 5 C 406 MET ILE LEU ILE PRO GLY GLN THR LEU PRO LEU GLN LEU SEQRES 6 C 406 PHE HIS PRO GLN GLU VAL SER MET VAL ARG ASN LEU ILE SEQRES 7 C 406 GLN LYS ASP ARG THR PHE ALA VAL LEU ALA TYR SER ASN SEQRES 8 C 406 VAL GLN GLU ARG GLU ALA GLN PHE GLY THR THR ALA GLU SEQRES 9 C 406 ILE TYR ALA TYR ARG GLU GLU GLN ASP PHE GLY ILE GLU SEQRES 10 C 406 ILE VAL LYS VAL LYS ALA ILE GLY ARG GLN ARG PHE LYS SEQRES 11 C 406 VAL LEU GLU LEU ARG THR GLN SER ASP GLY ILE GLN GLN SEQRES 12 C 406 ALA LYS VAL GLN ILE LEU PRO GLU CYS VAL LEU PRO SER SEQRES 13 C 406 THR MET SER ALA VAL GLN LEU GLU SER LEU ASN LYS CYS SEQRES 14 C 406 GLN ILE PHE PRO SER LYS PRO VAL SER ARG GLU ASP GLN SEQRES 15 C 406 CYS SER TYR LYS TRP TRP GLN LYS TYR GLN LYS ARG LYS SEQRES 16 C 406 PHE HIS CYS ALA ASN LEU THR SER TRP PRO ARG TRP LEU SEQRES 17 C 406 TYR SER LEU TYR ASP ALA GLU THR LEU MET ASP ARG ILE SEQRES 18 C 406 LYS LYS GLN LEU ARG GLU TRP ASP GLU ASN LEU LYS ASP SEQRES 19 C 406 ASP SER LEU PRO SER ASN PRO ILE ASP PHE SER TYR ARG SEQRES 20 C 406 VAL ALA ALA CYS LEU PRO ILE ASP ASP VAL LEU ARG ILE SEQRES 21 C 406 GLN LEU LEU LYS ILE GLY SER ALA ILE GLN ARG LEU ARG SEQRES 22 C 406 CYS GLU LEU ASP ILE MET ASN LYS CYS THR SER LEU CYS SEQRES 23 C 406 CYS LYS GLN CYS GLN GLU THR GLU ILE THR THR LYS ASN SEQRES 24 C 406 GLU ILE PHE SER LEU SER LEU CYS GLY PRO MET ALA ALA SEQRES 25 C 406 TYR VAL ASN PRO HIS GLY TYR VAL HIS GLU THR LEU THR SEQRES 26 C 406 VAL TYR LYS ALA CYS ASN LEU ASN LEU ILE GLY ARG PRO SEQRES 27 C 406 SER THR GLU HIS SER TRP PHE PRO GLY TYR ALA TRP THR SEQRES 28 C 406 VAL ALA GLN CYS LYS ILE CYS ALA SER HIS ILE GLY TRP SEQRES 29 C 406 LYS PHE THR ALA THR LYS LYS ASP MET SER PRO GLN LYS SEQRES 30 C 406 PHE TRP GLY LEU THR ARG SER ALA LEU LEU PRO THR ILE SEQRES 31 C 406 PRO ASP THR GLU ASP GLU ILE SER PRO ASP LYS VAL ILE SEQRES 32 C 406 LEU CYS LEU SEQRES 1 E 28 THR GLY GLU ARG PRO PHE VAL CYS SER VAL CYS GLY HIS SEQRES 2 E 28 ARG PHE THR THR LYS GLY ASN LEU LYS VAL HIS PHE HIS SEQRES 3 E 28 ARG HIS HET ZN C 501 1 HET Y70 C 502 20 HET ZN E 501 1 HETNAM ZN ZINC ION HETNAM Y70 S-POMALIDOMIDE FORMUL 4 ZN 2(ZN 2+) FORMUL 5 Y70 C13 H11 N3 O4 HELIX 1 AA1 PRO A 250 LYS A 254 5 5 HELIX 2 AA2 ALA A 381 GLU A 384 5 4 HELIX 3 AA3 PRO A 937 GLY A 940 5 4 HELIX 4 AA4 SER A 1044 ILE A 1062 1 19 HELIX 5 AA5 GLU A 1069 SER A 1075 1 7 HELIX 6 AA6 ASP A 1090 GLU A 1095 1 6 HELIX 7 AA7 SER A 1096 ASP A 1099 5 4 HELIX 8 AA8 SER A 1101 VAL A 1109 1 9 HELIX 9 AA9 THR A 1125 THR A 1137 1 13 HELIX 10 AB1 LEU C 53 HIS C 57 5 5 HELIX 11 AB2 HIS C 103 ILE C 114 1 12 HELIX 12 AB3 LEU C 199 LYS C 204 1 6 HELIX 13 AB4 TYR C 221 PHE C 232 1 12 HELIX 14 AB5 HIS C 233 THR C 238 5 6 HELIX 15 AB6 PRO C 241 LEU C 247 1 7 HELIX 16 AB7 ASP C 249 TRP C 264 1 16 HELIX 17 AB8 ASN C 276 LEU C 288 1 13 HELIX 18 AB9 ASP C 291 ILE C 301 1 11 HELIX 19 AC1 SER C 303 CYS C 318 1 16 HELIX 20 AC2 ASN C 335 ILE C 337 5 3 HELIX 21 AC3 THR E 421 HIS E 430 1 10 SHEET 1 AA1 4 TYR A 3 GLN A 10 0 SHEET 2 AA1 4 ILE A1037 LEU A1043 -1 O LEU A1043 N TYR A 3 SHEET 3 AA1 4 GLN A1025 THR A1032 -1 N GLN A1025 O SER A1042 SHEET 4 AA1 4 VAL A1004 HIS A1009 -1 N CYS A1008 O LEU A1029 SHEET 1 AA2 4 GLY A 17 GLY A 21 0 SHEET 2 AA2 4 ASN A 30 ALA A 34 -1 O ASN A 30 N GLY A 21 SHEET 3 AA2 4 LEU A 39 VAL A 43 -1 O GLU A 40 N ILE A 33 SHEET 4 AA2 4 ARG A 50 VAL A 55 -1 O ARG A 50 N VAL A 43 SHEET 1 AA3 4 ILE A 61 PHE A 67 0 SHEET 2 AA3 4 LEU A 76 THR A 81 -1 O LEU A 76 N PHE A 67 SHEET 3 AA3 4 ASN A 85 LYS A 92 -1 O LEU A 89 N LEU A 77 SHEET 4 AA3 4 ASP A 99 ASN A 107 -1 O ARG A 103 N ILE A 88 SHEET 1 AA4 4 ILE A 121 ILE A 124 0 SHEET 2 AA4 4 MET A 130 ARG A 134 -1 O ARG A 134 N ILE A 121 SHEET 3 AA4 4 LEU A 139 PRO A 144 -1 O ILE A 143 N ILE A 131 SHEET 4 AA4 4 PHE A 155 ARG A 158 -1 O PHE A 155 N VAL A 142 SHEET 1 AA5 4 VAL A 164 PHE A 169 0 SHEET 2 AA5 4 THR A 177 ASP A 184 -1 O VAL A 181 N ILE A 165 SHEET 3 AA5 4 GLY A 187 VAL A 195 -1 O LYS A 191 N PHE A 180 SHEET 4 AA5 4 PHE A 202 GLN A 209 -1 O ASN A 203 N GLU A 194 SHEET 1 AA6 4 MET A 218 ALA A 221 0 SHEET 2 AA6 4 ALA A 229 ILE A 232 -1 O ILE A 230 N ILE A 220 SHEET 3 AA6 4 ILE A 237 ASN A 241 -1 O THR A 238 N ILE A 231 SHEET 4 AA6 4 LYS A 244 ILE A 248 -1 O LYS A 244 N ASN A 241 SHEET 1 AA7 4 ILE A 258 ARG A 263 0 SHEET 2 AA7 4 ARG A 270 ASP A 275 -1 O GLY A 274 N CYS A 260 SHEET 3 AA7 4 ARG A 279 GLN A 290 -1 O LEU A 283 N TYR A 271 SHEET 4 AA7 4 GLY A 293 GLU A 307 -1 O LYS A 298 N GLU A 286 SHEET 1 AA8 4 ALA A 311 LEU A 317 0 SHEET 2 AA8 4 VAL A 321 SER A 326 -1 O VAL A 321 N LEU A 317 SHEET 3 AA8 4 SER A 331 ASN A 337 -1 O VAL A 334 N VAL A 322 SHEET 4 AA8 4 TYR A 346 PHE A 353 -1 O VAL A 348 N LYS A 335 SHEET 1 AA9 4 ASP A 361 VAL A 365 0 SHEET 2 AA9 4 GLN A 374 SER A 379 -1 O CYS A 378 N ASP A 361 SHEET 3 AA9 4 SER A 386 GLY A 393 -1 O SER A 386 N SER A 379 SHEET 4 AA9 4 LYS A 709 PRO A 716 -1 O VAL A 715 N LEU A 387 SHEET 1 AB1 4 ILE A 396 ASP A 403 0 SHEET 2 AB1 4 THR A 698 ILE A 704 -1 O ILE A 701 N HIS A 399 SHEET 3 AB1 4 SER A 690 ALA A 694 -1 N LEU A 693 O THR A 700 SHEET 4 AB1 4 TYR A 678 LEU A 682 -1 N LEU A 682 O SER A 690 SHEET 1 AB2 4 GLY A 409 LEU A 413 0 SHEET 2 AB2 4 THR A 424 PHE A 429 -1 O VAL A 426 N TRP A 411 SHEET 3 AB2 4 GLN A 432 ASN A 439 -1 O ARG A 434 N LEU A 427 SHEET 4 AB2 4 GLU A 442 THR A 446 -1 O THR A 446 N VAL A 435 SHEET 1 AB3 4 THR A 457 VAL A 463 0 SHEET 2 AB3 4 GLN A 467 THR A 472 -1 O ILE A 471 N PHE A 459 SHEET 3 AB3 4 VAL A 476 SER A 480 -1 O ARG A 477 N GLN A 470 SHEET 4 AB3 4 LEU A 486 TRP A 490 -1 O VAL A 487 N LEU A 478 SHEET 1 AB4 3 GLN A 507 VAL A 512 0 SHEET 2 AB4 3 ALA A 515 HIS A 522 -1 O LEU A 519 N VAL A 508 SHEET 3 AB4 3 GLU A 525 THR A 532 -1 O THR A 532 N LEU A 516 SHEET 1 AB5 4 VAL A 538 ASP A 542 0 SHEET 2 AB5 4 LEU A 555 LEU A 560 -1 O ALA A 557 N ASP A 542 SHEET 3 AB5 4 SER A 565 LYS A 570 -1 O ARG A 567 N ILE A 558 SHEET 4 AB5 4 LYS A 579 MET A 581 -1 O GLU A 580 N ALA A 566 SHEET 1 AB6 4 PRO A 588 THR A 595 0 SHEET 2 AB6 4 HIS A 600 LEU A 606 -1 O LEU A 603 N LEU A 592 SHEET 3 AB6 4 ALA A 610 LEU A 616 -1 O PHE A 612 N CYS A 604 SHEET 4 AB6 4 LEU A 623 SER A 624 -1 O SER A 624 N GLY A 615 SHEET 1 AB7 4 PRO A 588 THR A 595 0 SHEET 2 AB7 4 HIS A 600 LEU A 606 -1 O LEU A 603 N LEU A 592 SHEET 3 AB7 4 ALA A 610 LEU A 616 -1 O PHE A 612 N CYS A 604 SHEET 4 AB7 4 LYS A 628 THR A 630 -1 O VAL A 629 N LEU A 611 SHEET 1 AB8 4 VAL A 637 SER A 643 0 SHEET 2 AB8 4 THR A 646 CYS A 652 -1 O PHE A 650 N ARG A 639 SHEET 3 AB8 4 THR A 657 SER A 661 -1 O THR A 657 N ALA A 651 SHEET 4 AB8 4 LEU A 666 ASN A 670 -1 O VAL A 667 N TYR A 660 SHEET 1 AB9 3 SER A 720 GLN A 727 0 SHEET 2 AB9 3 CYS A 732 VAL A 742 -1 O LEU A 736 N ARG A 722 SHEET 3 AB9 3 THR A 750 ALA A 751 -1 O THR A 750 N VAL A 742 SHEET 1 AC1 5 SER A 720 GLN A 727 0 SHEET 2 AC1 5 CYS A 732 VAL A 742 -1 O LEU A 736 N ARG A 722 SHEET 3 AC1 5 VAL A 786 ASP A 795 -1 O LEU A 792 N VAL A 735 SHEET 4 AC1 5 VAL A 801 GLN A 806 -1 O HIS A 803 N ILE A 793 SHEET 5 AC1 5 SER A 762 VAL A 765 1 N SER A 764 O GLN A 806 SHEET 1 AC2 4 GLU A 811 CYS A 819 0 SHEET 2 AC2 4 TYR A 828 MET A 835 -1 O GLY A 832 N SER A 815 SHEET 3 AC2 4 ILE A 848 SER A 854 -1 O PHE A 851 N PHE A 829 SHEET 4 AC2 4 LYS A 857 ALA A 862 -1 O GLN A 859 N GLN A 852 SHEET 1 AC3 4 MET A 873 PHE A 876 0 SHEET 2 AC3 4 LYS A 879 ILE A 884 -1 O LYS A 879 N PHE A 876 SHEET 3 AC3 4 THR A 887 TRP A 893 -1 O THR A 887 N ILE A 884 SHEET 4 AC3 4 LEU A 899 TYR A 906 -1 O ARG A 900 N GLU A 892 SHEET 1 AC4 4 TYR A 913 LYS A 917 0 SHEET 2 AC4 4 PHE A 920 GLY A 924 -1 O LEU A 922 N LYS A 915 SHEET 3 AC4 4 VAL A 930 LYS A 936 -1 O LEU A 931 N VAL A 923 SHEET 4 AC4 4 ASN A 941 ASP A 948 -1 O ASP A 948 N VAL A 930 SHEET 1 AC5 4 MET A 954 ILE A 959 0 SHEET 2 AC5 4 ASN A 964 GLU A 969 -1 O ALA A 968 N SER A 955 SHEET 3 AC5 4 ASN A 973 GLN A 978 -1 O PHE A 975 N GLY A 967 SHEET 4 AC5 4 GLN A 993 HIS A 999 -1 O PHE A 998 N LEU A 974 SHEET 1 AC6 4 CYS C 78 ILE C 81 0 SHEET 2 AC6 4 ALA C 180 ILE C 184 -1 O VAL C 182 N GLN C 79 SHEET 3 AC6 4 ILE C 152 LYS C 166 -1 N LYS C 166 O GLN C 183 SHEET 4 AC6 4 THR C 96 LEU C 101 -1 N LEU C 97 O ALA C 159 SHEET 1 AC7 5 CYS C 78 ILE C 81 0 SHEET 2 AC7 5 ALA C 180 ILE C 184 -1 O VAL C 182 N GLN C 79 SHEET 3 AC7 5 ILE C 152 LYS C 166 -1 N LYS C 166 O GLN C 183 SHEET 4 AC7 5 GLY C 136 ASP C 149 -1 N GLU C 147 O ILE C 154 SHEET 5 AC7 5 THR C 119 VAL C 122 -1 N PHE C 120 O ALA C 139 SHEET 1 AC8 3 GLU C 330 THR C 333 0 SHEET 2 AC8 3 SER C 320 CYS C 323 -1 N LEU C 321 O ILE C 331 SHEET 3 AC8 3 LEU C 422 THR C 425 -1 O THR C 425 N SER C 320 SHEET 1 AC9 6 MET C 346 VAL C 350 0 SHEET 2 AC9 6 VAL C 356 VAL C 362 -1 O HIS C 357 N TYR C 349 SHEET 3 AC9 6 LYS C 413 THR C 418 -1 O LEU C 417 N LEU C 360 SHEET 4 AC9 6 HIS C 397 ALA C 404 -1 N TRP C 400 O GLY C 416 SHEET 5 AC9 6 TYR C 384 CYS C 391 -1 N ALA C 385 O THR C 403 SHEET 6 AC9 6 LEU C 368 SER C 375 -1 N ASN C 369 O GLN C 390 SHEET 1 AD1 2 PHE E 410 VAL E 411 0 SHEET 2 AD1 2 ARG E 418 PHE E 419 -1 O PHE E 419 N PHE E 410 SSBOND 1 CYS A 18 CYS A 313 1555 1555 2.03 LINK SG CYS C 323 ZN ZN C 501 1555 1555 2.49 LINK SG CYS C 326 ZN ZN C 501 1555 1555 2.28 LINK SG CYS C 391 ZN ZN C 501 1555 1555 2.49 LINK SG CYS C 394 ZN ZN C 501 1555 1555 2.25 LINK SG CYS E 412 ZN ZN E 501 1555 1555 2.35 LINK SG CYS E 415 ZN ZN E 501 1555 1555 2.47 LINK NE2 HIS E 428 ZN ZN E 501 1555 1555 2.08 CISPEP 1 LEU A 571 PRO A 572 0 -1.04 SITE 1 AC1 4 CYS C 323 CYS C 326 CYS C 391 CYS C 394 SITE 1 AC2 13 ASN C 351 PRO C 352 HIS C 353 GLU C 377 SITE 2 AC2 13 HIS C 378 TRP C 380 TRP C 386 PHE C 402 SITE 3 AC2 13 VAL E 411 CYS E 412 VAL E 414 CYS E 415 SITE 4 AC2 13 GLY E 416 SITE 1 AC3 4 CYS E 412 CYS E 415 HIS E 428 HIS E 432 CRYST1 77.409 127.725 110.174 90.00 109.69 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012918 0.000000 0.004624 0.00000 SCALE2 0.000000 0.007829 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009640 0.00000