HEADER TRANSFERASE 10-OCT-19 6UMQ TITLE STRUCTURE OF DUF89 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DAMAGE-CONTROL PHOSPHATASE DUF89; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ACIDIC RESIDUE METHYLTRANSFERASE 1,PROTEIN-GLUTAMATE O- COMPND 5 METHYLTRANSFERASE,SUGAR PHOSPHATE PHOSPHATASE ARMT1; COMPND 6 EC: 3.1.3.-,2.1.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ARMT1, C6ORF211; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METABOLITE REPAIR, DUF89, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.J.PERRY,N.KENJIC,T.N.DENNIS REVDAT 3 11-OCT-23 6UMQ 1 REMARK REVDAT 2 07-OCT-20 6UMQ 1 JRNL REVDAT 1 29-JUL-20 6UMQ 0 JRNL AUTH T.N.DENNIS,N.KENJIC,A.S.KANG,J.D.LOWENSON,J.S.KIRKWOOD, JRNL AUTH 2 S.G.CLARKE,J.J.P.PERRY JRNL TITL HUMAN ARMT1 STRUCTURE AND SUBSTRATE SPECIFICITY INDICATES JRNL TITL 2 THAT IT IS A DUF89 FAMILY DAMAGE-CONTROL PHOSPHATASE. JRNL REF J.STRUCT.BIOL. V. 212 07576 2020 JRNL REFN ESSN 1095-8657 JRNL PMID 32682077 JRNL DOI 10.1016/J.JSB.2020.107576 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 84395 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.340 REMARK 3 FREE R VALUE TEST SET COUNT : 1975 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 4.4600 - 3.5400 0.98 5968 142 0.1847 0.1954 REMARK 3 2 3.5400 - 3.0900 0.99 5958 142 0.1942 0.2415 REMARK 3 3 3.0900 - 2.8100 0.98 5861 142 0.1972 0.1991 REMARK 3 4 2.8100 - 2.6100 0.98 5843 138 0.1969 0.2074 REMARK 3 5 2.6100 - 2.4500 0.98 5833 139 0.1922 0.2272 REMARK 3 6 2.4500 - 2.3300 0.98 5843 143 0.1912 0.2135 REMARK 3 7 2.3300 - 2.2300 0.98 5852 140 0.1873 0.2241 REMARK 3 8 2.2300 - 2.1400 0.98 5808 140 0.1863 0.2662 REMARK 3 9 2.1400 - 2.0700 0.99 5891 140 0.1920 0.2111 REMARK 3 10 2.0700 - 2.0000 0.99 5878 140 0.1845 0.2360 REMARK 3 11 2.0000 - 1.9500 0.99 5854 141 0.1874 0.2324 REMARK 3 12 1.9500 - 1.9000 0.99 5867 142 0.1967 0.2525 REMARK 3 13 1.9000 - 1.8500 0.99 5849 141 0.2169 0.2713 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.175 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.456 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 7094 REMARK 3 ANGLE : 1.215 9630 REMARK 3 CHIRALITY : 0.063 1030 REMARK 3 PLANARITY : 0.008 1214 REMARK 3 DIHEDRAL : 21.570 2580 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UMQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1000244847. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 12.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85552 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 66.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.11800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.21500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3PT1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 4000, 200MM MGCL2, 100MM TRIS REMARK 280 -HCL PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.10050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.10050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.07000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 97.23650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.07000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 97.23650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.10050 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.07000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 97.23650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 57.10050 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.07000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 97.23650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 VAL A 3 REMARK 465 GLY A 191 REMARK 465 ASN A 192 REMARK 465 LYS A 193 REMARK 465 CYS A 194 REMARK 465 ASP A 195 REMARK 465 LEU A 196 REMARK 465 SER A 197 REMARK 465 LEU A 198 REMARK 465 SER A 199 REMARK 465 GLY A 200 REMARK 465 GLY A 201 REMARK 465 GLU A 202 REMARK 465 SER A 203 REMARK 465 SER A 204 REMARK 465 SER A 205 REMARK 465 GLN A 206 REMARK 465 ASN A 207 REMARK 465 THR A 208 REMARK 465 ASN A 209 REMARK 465 VAL A 210 REMARK 465 LEU A 211 REMARK 465 ASN A 212 REMARK 465 SER A 213 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 VAL B 3 REMARK 465 GLY B 191 REMARK 465 ASN B 192 REMARK 465 LYS B 193 REMARK 465 CYS B 194 REMARK 465 ASP B 195 REMARK 465 LEU B 196 REMARK 465 SER B 197 REMARK 465 LEU B 198 REMARK 465 SER B 199 REMARK 465 GLY B 200 REMARK 465 GLY B 201 REMARK 465 GLU B 202 REMARK 465 SER B 203 REMARK 465 SER B 204 REMARK 465 SER B 205 REMARK 465 GLN B 206 REMARK 465 ASN B 207 REMARK 465 THR B 208 REMARK 465 ASN B 209 REMARK 465 VAL B 210 REMARK 465 LEU B 211 REMARK 465 ASN B 212 REMARK 465 SER B 213 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 844 O HOH A 854 2.12 REMARK 500 OG SER A 143 O HOH A 601 2.13 REMARK 500 OG1 THR B 168 O HOH B 601 2.15 REMARK 500 O HOH A 674 O HOH A 840 2.15 REMARK 500 O HOH B 807 O HOH B 817 2.16 REMARK 500 O HOH B 809 O HOH B 865 2.16 REMARK 500 O HOH A 663 O HOH A 871 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 46 CE LYS A 46 NZ -0.313 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 351 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 253 -107.73 -120.55 REMARK 500 VAL A 289 -74.75 64.85 REMARK 500 HIS A 393 57.31 -141.64 REMARK 500 GLN A 408 119.41 -163.10 REMARK 500 GLU A 423 82.39 -156.82 REMARK 500 ASP B 253 -103.69 -122.08 REMARK 500 VAL B 289 -76.30 66.35 REMARK 500 HIS B 393 57.28 -143.07 REMARK 500 GLU B 423 81.39 -156.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 253 OD1 REMARK 620 2 ASN A 254 OD1 87.8 REMARK 620 3 ASP A 291 OD1 90.7 89.1 REMARK 620 4 HOH A 653 O 178.6 91.9 90.8 REMARK 620 5 HOH A 728 O 88.6 174.4 86.7 91.8 REMARK 620 6 HOH A 811 O 91.5 92.8 177.1 87.1 91.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 669 O REMARK 620 2 HOH A 722 O 86.7 REMARK 620 3 HOH A 845 O 85.9 172.5 REMARK 620 4 HOH B 644 O 92.3 86.2 92.7 REMARK 620 5 HOH B 728 O 179.4 93.8 93.6 87.4 REMARK 620 6 HOH B 852 O 91.9 93.0 88.5 175.7 88.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 673 O REMARK 620 2 HOH A 682 O 87.5 REMARK 620 3 HOH A 710 O 88.4 92.1 REMARK 620 4 HOH A 874 O 176.9 89.6 90.8 REMARK 620 5 HOH B 630 O 91.6 179.0 88.0 91.4 REMARK 620 6 HOH B 823 O 93.7 97.3 170.4 87.6 82.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 253 OD1 REMARK 620 2 ASN B 254 OD1 86.0 REMARK 620 3 ASP B 291 OD1 89.7 90.0 REMARK 620 4 HOH B 655 O 175.6 90.1 92.3 REMARK 620 5 HOH B 762 O 89.0 174.9 89.0 95.0 REMARK 620 6 HOH B 773 O 91.8 89.7 178.4 86.1 91.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6UMR RELATED DB: PDB DBREF 6UMQ A 1 441 UNP Q9H993 ARMT1_HUMAN 1 441 DBREF 6UMQ B 1 441 UNP Q9H993 ARMT1_HUMAN 1 441 SEQRES 1 A 441 MET ALA VAL VAL PRO ALA SER LEU SER GLY GLN ASP VAL SEQRES 2 A 441 GLY SER PHE ALA TYR LEU THR ILE LYS ASP ARG ILE PRO SEQRES 3 A 441 GLN ILE LEU THR LYS VAL ILE ASP THR LEU HIS ARG HIS SEQRES 4 A 441 LYS SER GLU PHE PHE GLU LYS HIS GLY GLU GLU GLY VAL SEQRES 5 A 441 GLU ALA GLU LYS LYS ALA ILE SER LEU LEU SER LYS LEU SEQRES 6 A 441 ARG ASN GLU LEU GLN THR ASP LYS PRO PHE ILE PRO LEU SEQRES 7 A 441 VAL GLU LYS PHE VAL ASP THR ASP ILE TRP ASN GLN TYR SEQRES 8 A 441 LEU GLU TYR GLN GLN SER LEU LEU ASN GLU SER ASP GLY SEQRES 9 A 441 LYS SER ARG TRP PHE TYR SER PRO TRP LEU LEU VAL GLU SEQRES 10 A 441 CYS TYR MET TYR ARG ARG ILE HIS GLU ALA ILE ILE GLN SEQRES 11 A 441 SER PRO PRO ILE ASP TYR PHE ASP VAL PHE LYS GLU SER SEQRES 12 A 441 LYS GLU GLN ASN PHE TYR GLY SER GLN GLU SER ILE ILE SEQRES 13 A 441 ALA LEU CYS THR HIS LEU GLN GLN LEU ILE ARG THR ILE SEQRES 14 A 441 GLU ASP LEU ASP GLU ASN GLN LEU LYS ASP GLU PHE PHE SEQRES 15 A 441 LYS LEU LEU GLN ILE SER LEU TRP GLY ASN LYS CYS ASP SEQRES 16 A 441 LEU SER LEU SER GLY GLY GLU SER SER SER GLN ASN THR SEQRES 17 A 441 ASN VAL LEU ASN SER LEU GLU ASP LEU LYS PRO PHE ILE SEQRES 18 A 441 LEU LEU ASN ASP MET GLU HIS LEU TRP SER LEU LEU SER SEQRES 19 A 441 ASN CYS LYS LYS THR ARG GLU LYS ALA SER ALA THR ARG SEQRES 20 A 441 VAL TYR ILE VAL LEU ASP ASN SER GLY PHE GLU LEU VAL SEQRES 21 A 441 THR ASP LEU ILE LEU ALA ASP PHE LEU LEU SER SER GLU SEQRES 22 A 441 LEU ALA THR GLU VAL HIS PHE TYR GLY LYS THR ILE PRO SEQRES 23 A 441 TRP PHE VAL SER ASP THR THR ILE HIS ASP PHE ASN TRP SEQRES 24 A 441 LEU ILE GLU GLN VAL LYS HIS SER ASN HIS LYS TRP MET SEQRES 25 A 441 SER LYS CYS GLY ALA ASP TRP GLU GLU TYR ILE LYS MET SEQRES 26 A 441 GLY LYS TRP VAL TYR HIS ASN HIS ILE PHE TRP THR LEU SEQRES 27 A 441 PRO HIS GLU TYR CYS ALA MET PRO GLN VAL ALA PRO ASP SEQRES 28 A 441 LEU TYR ALA GLU LEU GLN LYS ALA HIS LEU ILE LEU PHE SEQRES 29 A 441 LYS GLY ASP LEU ASN TYR ARG LYS LEU THR GLY ASP ARG SEQRES 30 A 441 LYS TRP GLU PHE SER VAL PRO PHE HIS GLN ALA LEU ASN SEQRES 31 A 441 GLY PHE HIS PRO ALA PRO LEU CYS THR ILE ARG THR LEU SEQRES 32 A 441 LYS ALA GLU ILE GLN VAL GLY LEU GLN PRO GLY GLN GLY SEQRES 33 A 441 GLU GLN LEU LEU ALA SER GLU PRO SER TRP TRP THR THR SEQRES 34 A 441 GLY LYS TYR GLY ILE PHE GLN TYR ASP GLY PRO LEU SEQRES 1 B 441 MET ALA VAL VAL PRO ALA SER LEU SER GLY GLN ASP VAL SEQRES 2 B 441 GLY SER PHE ALA TYR LEU THR ILE LYS ASP ARG ILE PRO SEQRES 3 B 441 GLN ILE LEU THR LYS VAL ILE ASP THR LEU HIS ARG HIS SEQRES 4 B 441 LYS SER GLU PHE PHE GLU LYS HIS GLY GLU GLU GLY VAL SEQRES 5 B 441 GLU ALA GLU LYS LYS ALA ILE SER LEU LEU SER LYS LEU SEQRES 6 B 441 ARG ASN GLU LEU GLN THR ASP LYS PRO PHE ILE PRO LEU SEQRES 7 B 441 VAL GLU LYS PHE VAL ASP THR ASP ILE TRP ASN GLN TYR SEQRES 8 B 441 LEU GLU TYR GLN GLN SER LEU LEU ASN GLU SER ASP GLY SEQRES 9 B 441 LYS SER ARG TRP PHE TYR SER PRO TRP LEU LEU VAL GLU SEQRES 10 B 441 CYS TYR MET TYR ARG ARG ILE HIS GLU ALA ILE ILE GLN SEQRES 11 B 441 SER PRO PRO ILE ASP TYR PHE ASP VAL PHE LYS GLU SER SEQRES 12 B 441 LYS GLU GLN ASN PHE TYR GLY SER GLN GLU SER ILE ILE SEQRES 13 B 441 ALA LEU CYS THR HIS LEU GLN GLN LEU ILE ARG THR ILE SEQRES 14 B 441 GLU ASP LEU ASP GLU ASN GLN LEU LYS ASP GLU PHE PHE SEQRES 15 B 441 LYS LEU LEU GLN ILE SER LEU TRP GLY ASN LYS CYS ASP SEQRES 16 B 441 LEU SER LEU SER GLY GLY GLU SER SER SER GLN ASN THR SEQRES 17 B 441 ASN VAL LEU ASN SER LEU GLU ASP LEU LYS PRO PHE ILE SEQRES 18 B 441 LEU LEU ASN ASP MET GLU HIS LEU TRP SER LEU LEU SER SEQRES 19 B 441 ASN CYS LYS LYS THR ARG GLU LYS ALA SER ALA THR ARG SEQRES 20 B 441 VAL TYR ILE VAL LEU ASP ASN SER GLY PHE GLU LEU VAL SEQRES 21 B 441 THR ASP LEU ILE LEU ALA ASP PHE LEU LEU SER SER GLU SEQRES 22 B 441 LEU ALA THR GLU VAL HIS PHE TYR GLY LYS THR ILE PRO SEQRES 23 B 441 TRP PHE VAL SER ASP THR THR ILE HIS ASP PHE ASN TRP SEQRES 24 B 441 LEU ILE GLU GLN VAL LYS HIS SER ASN HIS LYS TRP MET SEQRES 25 B 441 SER LYS CYS GLY ALA ASP TRP GLU GLU TYR ILE LYS MET SEQRES 26 B 441 GLY LYS TRP VAL TYR HIS ASN HIS ILE PHE TRP THR LEU SEQRES 27 B 441 PRO HIS GLU TYR CYS ALA MET PRO GLN VAL ALA PRO ASP SEQRES 28 B 441 LEU TYR ALA GLU LEU GLN LYS ALA HIS LEU ILE LEU PHE SEQRES 29 B 441 LYS GLY ASP LEU ASN TYR ARG LYS LEU THR GLY ASP ARG SEQRES 30 B 441 LYS TRP GLU PHE SER VAL PRO PHE HIS GLN ALA LEU ASN SEQRES 31 B 441 GLY PHE HIS PRO ALA PRO LEU CYS THR ILE ARG THR LEU SEQRES 32 B 441 LYS ALA GLU ILE GLN VAL GLY LEU GLN PRO GLY GLN GLY SEQRES 33 B 441 GLU GLN LEU LEU ALA SER GLU PRO SER TRP TRP THR THR SEQRES 34 B 441 GLY LYS TYR GLY ILE PHE GLN TYR ASP GLY PRO LEU HET MG A 501 1 HET MG A 502 1 HET MG B 501 1 HET MG B 502 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 4(MG 2+) FORMUL 7 HOH *575(H2 O) HELIX 1 AA1 SER A 15 ASP A 23 1 9 HELIX 2 AA2 ASP A 23 HIS A 39 1 17 HELIX 3 AA3 HIS A 39 GLY A 48 1 10 HELIX 4 AA4 GLY A 48 THR A 71 1 24 HELIX 5 AA5 ASP A 84 LEU A 98 1 15 HELIX 6 AA6 LEU A 99 GLY A 104 5 6 HELIX 7 AA7 PRO A 112 GLN A 130 1 19 HELIX 8 AA8 PHE A 140 SER A 151 1 12 HELIX 9 AA9 SER A 151 THR A 168 1 18 HELIX 10 AB1 ILE A 169 LEU A 172 5 4 HELIX 11 AB2 ASP A 173 TRP A 190 1 18 HELIX 12 AB3 LEU A 217 PRO A 219 5 3 HELIX 13 AB4 ASP A 225 ARG A 240 1 16 HELIX 14 AB5 SER A 255 SER A 272 1 18 HELIX 15 AB6 THR A 293 HIS A 306 1 14 HELIX 16 AB7 HIS A 309 MET A 325 1 17 HELIX 17 AB8 HIS A 333 LEU A 338 5 6 HELIX 18 AB9 GLU A 341 CYS A 343 5 3 HELIX 19 AC1 ALA A 344 ALA A 349 1 6 HELIX 20 AC2 ALA A 349 GLN A 357 1 9 HELIX 21 AC3 GLY A 366 THR A 374 1 9 HELIX 22 AC4 PRO A 384 LEU A 389 1 6 HELIX 23 AC5 GLY A 414 GLU A 423 1 10 HELIX 24 AC6 SER A 425 THR A 429 5 5 HELIX 25 AC7 SER B 15 HIS B 39 1 25 HELIX 26 AC8 HIS B 39 GLY B 48 1 10 HELIX 27 AC9 GLY B 48 ASP B 72 1 25 HELIX 28 AD1 ASP B 84 LEU B 98 1 15 HELIX 29 AD2 LEU B 99 GLY B 104 5 6 HELIX 30 AD3 PRO B 112 GLN B 130 1 19 HELIX 31 AD4 PHE B 140 GLY B 150 1 11 HELIX 32 AD5 SER B 151 THR B 168 1 18 HELIX 33 AD6 ILE B 169 LEU B 172 5 4 HELIX 34 AD7 ASP B 173 TRP B 190 1 18 HELIX 35 AD8 LEU B 217 PRO B 219 5 3 HELIX 36 AD9 ASP B 225 ARG B 240 1 16 HELIX 37 AE1 SER B 255 SER B 272 1 18 HELIX 38 AE2 THR B 293 HIS B 306 1 14 HELIX 39 AE3 HIS B 309 MET B 325 1 17 HELIX 40 AE4 HIS B 333 LEU B 338 5 6 HELIX 41 AE5 GLU B 341 CYS B 343 5 3 HELIX 42 AE6 ALA B 344 ALA B 349 1 6 HELIX 43 AE7 ALA B 349 GLN B 357 1 9 HELIX 44 AE8 GLY B 366 GLY B 375 1 10 HELIX 45 AE9 PRO B 384 LEU B 389 1 6 HELIX 46 AF1 GLY B 414 GLU B 423 1 10 HELIX 47 AF2 SER B 425 THR B 429 5 5 SHEET 1 AA1 7 ILE A 221 ASN A 224 0 SHEET 2 AA1 7 GLY A 433 ASP A 438 1 O GLY A 433 N LEU A 222 SHEET 3 AA1 7 LEU A 397 THR A 402 -1 N LEU A 397 O ASP A 438 SHEET 4 AA1 7 LEU A 361 LYS A 365 1 N PHE A 364 O CYS A 398 SHEET 5 AA1 7 ARG A 247 VAL A 251 1 N TYR A 249 O LEU A 363 SHEET 6 AA1 7 GLU A 277 TYR A 281 1 O HIS A 279 N ILE A 250 SHEET 7 AA1 7 TRP A 328 HIS A 331 1 O VAL A 329 N PHE A 280 SHEET 1 AA2 7 ILE B 221 ASN B 224 0 SHEET 2 AA2 7 GLY B 433 ASP B 438 1 O GLY B 433 N LEU B 222 SHEET 3 AA2 7 LEU B 397 THR B 402 -1 N LEU B 397 O ASP B 438 SHEET 4 AA2 7 LEU B 361 LYS B 365 1 N PHE B 364 O CYS B 398 SHEET 5 AA2 7 ARG B 247 VAL B 251 1 N TYR B 249 O LEU B 363 SHEET 6 AA2 7 GLU B 277 TYR B 281 1 O HIS B 279 N ILE B 250 SHEET 7 AA2 7 TRP B 328 HIS B 331 1 O VAL B 329 N PHE B 280 LINK OD1 ASP A 253 MG MG A 502 1555 1555 2.01 LINK OD1 ASN A 254 MG MG A 502 1555 1555 2.06 LINK OD1 ASP A 291 MG MG A 502 1555 1555 1.95 LINK MG MG A 501 O HOH A 669 1555 1555 2.12 LINK MG MG A 501 O HOH A 722 1555 1555 2.02 LINK MG MG A 501 O HOH A 845 1555 1555 2.08 LINK MG MG A 501 O HOH B 644 1555 1555 2.17 LINK MG MG A 501 O HOH B 728 1555 1555 2.08 LINK MG MG A 501 O HOH B 852 1555 1555 2.08 LINK MG MG A 502 O HOH A 653 1555 1555 2.10 LINK MG MG A 502 O HOH A 728 1555 1555 2.08 LINK MG MG A 502 O HOH A 811 1555 1555 2.22 LINK O HOH A 673 MG MG B 501 1555 1555 2.15 LINK O HOH A 682 MG MG B 501 1555 1555 2.17 LINK O HOH A 710 MG MG B 501 1555 1555 2.03 LINK O HOH A 874 MG MG B 501 1555 1555 2.15 LINK OD1 ASP B 253 MG MG B 502 1555 1555 2.05 LINK OD1 ASN B 254 MG MG B 502 1555 1555 2.09 LINK OD1 ASP B 291 MG MG B 502 1555 1555 1.98 LINK MG MG B 501 O HOH B 630 1555 1555 2.10 LINK MG MG B 501 O HOH B 823 1555 1555 2.12 LINK MG MG B 502 O HOH B 655 1555 1555 2.07 LINK MG MG B 502 O HOH B 762 1555 1555 2.11 LINK MG MG B 502 O HOH B 773 1555 1555 2.17 CISPEP 1 PRO A 132 PRO A 133 0 11.66 CISPEP 2 PRO B 132 PRO B 133 0 11.17 SITE 1 AC1 6 HOH A 669 HOH A 722 HOH A 845 HOH B 644 SITE 2 AC1 6 HOH B 728 HOH B 852 SITE 1 AC2 6 ASP A 253 ASN A 254 ASP A 291 HOH A 653 SITE 2 AC2 6 HOH A 728 HOH A 811 SITE 1 AC3 6 HOH A 673 HOH A 682 HOH A 710 HOH A 874 SITE 2 AC3 6 HOH B 630 HOH B 823 SITE 1 AC4 6 ASP B 253 ASN B 254 ASP B 291 HOH B 655 SITE 2 AC4 6 HOH B 762 HOH B 773 CRYST1 90.140 194.473 114.201 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011094 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005142 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008756 0.00000