HEADER TRANSFERASE 10-OCT-19 6UMR TITLE STRUCTURE OF DUF89 - D291A MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: DAMAGE-CONTROL PHOSPHATASE DUF89; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ACIDIC RESIDUE METHYLTRANSFERASE 1,PROTEIN-GLUTAMATE O- COMPND 5 METHYLTRANSFERASE,SUGAR PHOSPHATE PHOSPHATASE ARMT1; COMPND 6 EC: 3.1.3.-,2.1.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ARMT1, C6ORF211; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METABOLITE REPAIR; DUF89, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.J.PERRY,N.KENJIC,T.N.DENNIS REVDAT 3 11-OCT-23 6UMR 1 REMARK REVDAT 2 07-OCT-20 6UMR 1 JRNL REVDAT 1 29-JUL-20 6UMR 0 JRNL AUTH T.N.DENNIS,N.KENJIC,A.S.KANG,J.D.LOWENSON,J.S.KIRKWOOD, JRNL AUTH 2 S.G.CLARKE,J.J.P.PERRY JRNL TITL HUMAN ARMT1 STRUCTURE AND SUBSTRATE SPECIFICITY INDICATES JRNL TITL 2 THAT IT IS A DUF89 FAMILY DAMAGE-CONTROL PHOSPHATASE. JRNL REF J.STRUCT.BIOL. V. 212 07576 2020 JRNL REFN ESSN 1095-8657 JRNL PMID 32682077 JRNL DOI 10.1016/J.JSB.2020.107576 REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 50882 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.930 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 5.3200 - 4.2300 1.00 3589 146 0.1739 0.1895 REMARK 3 2 4.2300 - 3.6900 1.00 3543 146 0.1857 0.2314 REMARK 3 3 3.6900 - 3.3600 0.99 3531 143 0.2102 0.3145 REMARK 3 4 3.3600 - 3.1100 0.99 3529 144 0.2195 0.2300 REMARK 3 5 3.1100 - 2.9300 0.99 3481 143 0.2311 0.2567 REMARK 3 6 2.9300 - 2.7800 0.99 3491 142 0.2386 0.2685 REMARK 3 7 2.7800 - 2.6600 0.98 3443 141 0.2346 0.2662 REMARK 3 8 2.6600 - 2.5600 0.98 3456 141 0.2244 0.2829 REMARK 3 9 2.5600 - 2.4700 0.98 3448 141 0.2288 0.2770 REMARK 3 10 2.4700 - 2.4000 0.98 3409 140 0.2319 0.2716 REMARK 3 11 2.4000 - 2.3300 0.98 3456 140 0.2467 0.2799 REMARK 3 12 2.3300 - 2.2700 0.98 3415 140 0.2798 0.3492 REMARK 3 13 2.2700 - 2.2100 0.97 3399 139 0.3023 0.3338 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.246 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.271 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 7094 REMARK 3 ANGLE : 1.071 9626 REMARK 3 CHIRALITY : 0.053 1030 REMARK 3 PLANARITY : 0.006 1212 REMARK 3 DIHEDRAL : 20.698 2576 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UMR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1000244855. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 12.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50993 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.210 REMARK 200 RESOLUTION RANGE LOW (A) : 99.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.13400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.48400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3PT1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 4000, 200MM MGCL2, 100MM TRIS REMARK 280 -HCL PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.47000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.47000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.63000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 97.34550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.63000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 97.34550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.47000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.63000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 97.34550 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 57.47000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.63000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 97.34550 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASN A 192 REMARK 465 LYS A 193 REMARK 465 CYS A 194 REMARK 465 ASP A 195 REMARK 465 LEU A 196 REMARK 465 SER A 197 REMARK 465 LEU A 198 REMARK 465 SER A 199 REMARK 465 GLY A 200 REMARK 465 GLY A 201 REMARK 465 GLU A 202 REMARK 465 SER A 203 REMARK 465 SER A 204 REMARK 465 SER A 205 REMARK 465 GLN A 206 REMARK 465 ASN A 207 REMARK 465 THR A 208 REMARK 465 ASN A 209 REMARK 465 VAL A 210 REMARK 465 LEU A 211 REMARK 465 ASN A 212 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 191 REMARK 465 ASN B 192 REMARK 465 LYS B 193 REMARK 465 CYS B 194 REMARK 465 ASP B 195 REMARK 465 LEU B 196 REMARK 465 SER B 197 REMARK 465 LEU B 198 REMARK 465 SER B 199 REMARK 465 GLY B 200 REMARK 465 GLY B 201 REMARK 465 GLU B 202 REMARK 465 SER B 203 REMARK 465 SER B 204 REMARK 465 SER B 205 REMARK 465 GLN B 206 REMARK 465 ASN B 207 REMARK 465 THR B 208 REMARK 465 ASN B 209 REMARK 465 VAL B 210 REMARK 465 LEU B 211 REMARK 465 ASN B 212 REMARK 465 LEU B 441 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 281 OE1 GLU B 355 2.16 REMARK 500 O HOH B 630 O HOH B 668 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 145 CD GLU A 145 OE1 -0.083 REMARK 500 GLU A 145 CD GLU A 145 OE2 -0.095 REMARK 500 GLU A 258 CD GLU A 258 OE1 -0.067 REMARK 500 GLU A 258 CD GLU A 258 OE2 -0.116 REMARK 500 GLU A 417 CD GLU A 417 OE1 -0.107 REMARK 500 GLU A 417 CD GLU A 417 OE2 -0.079 REMARK 500 LYS B 218 C PRO B 219 N 0.189 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 240 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 TYR A 342 CB - CG - CD1 ANGL. DEV. = 4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 79 -55.20 -128.40 REMARK 500 ASP A 253 -99.85 -120.48 REMARK 500 SER A 255 -158.98 -91.36 REMARK 500 VAL A 289 -83.30 66.15 REMARK 500 GLN A 408 114.55 -168.51 REMARK 500 ASP B 253 -102.91 -117.76 REMARK 500 SER B 255 -154.98 -82.37 REMARK 500 VAL B 289 -77.55 65.60 REMARK 500 GLN B 408 116.97 -165.87 REMARK 500 GLU B 423 81.44 -159.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 652 O REMARK 620 2 HOH A 749 O 89.7 REMARK 620 3 HOH B 655 O 89.8 81.0 REMARK 620 4 HOH B 666 O 163.6 101.1 79.9 REMARK 620 5 HOH B 689 O 76.9 155.4 78.4 88.5 REMARK 620 6 HOH B 789 O 95.3 112.8 165.2 91.9 89.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 640 O REMARK 620 2 HOH A 680 O 87.0 REMARK 620 3 HOH A 815 O 84.6 156.6 REMARK 620 4 HOH B 616 O 163.7 97.0 85.6 REMARK 620 5 HOH B 683 O 84.8 84.7 72.9 79.9 REMARK 620 6 HOH B 760 O 113.9 115.4 87.9 78.7 152.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6UMQ RELATED DB: PDB DBREF 6UMR A 1 441 UNP Q9H993 ARMT1_HUMAN 1 441 DBREF 6UMR B 1 441 UNP Q9H993 ARMT1_HUMAN 1 441 SEQADV 6UMR ALA A 291 UNP Q9H993 ASP 291 ENGINEERED MUTATION SEQADV 6UMR ALA B 291 UNP Q9H993 ASP 291 ENGINEERED MUTATION SEQRES 1 A 441 MET ALA VAL VAL PRO ALA SER LEU SER GLY GLN ASP VAL SEQRES 2 A 441 GLY SER PHE ALA TYR LEU THR ILE LYS ASP ARG ILE PRO SEQRES 3 A 441 GLN ILE LEU THR LYS VAL ILE ASP THR LEU HIS ARG HIS SEQRES 4 A 441 LYS SER GLU PHE PHE GLU LYS HIS GLY GLU GLU GLY VAL SEQRES 5 A 441 GLU ALA GLU LYS LYS ALA ILE SER LEU LEU SER LYS LEU SEQRES 6 A 441 ARG ASN GLU LEU GLN THR ASP LYS PRO PHE ILE PRO LEU SEQRES 7 A 441 VAL GLU LYS PHE VAL ASP THR ASP ILE TRP ASN GLN TYR SEQRES 8 A 441 LEU GLU TYR GLN GLN SER LEU LEU ASN GLU SER ASP GLY SEQRES 9 A 441 LYS SER ARG TRP PHE TYR SER PRO TRP LEU LEU VAL GLU SEQRES 10 A 441 CYS TYR MET TYR ARG ARG ILE HIS GLU ALA ILE ILE GLN SEQRES 11 A 441 SER PRO PRO ILE ASP TYR PHE ASP VAL PHE LYS GLU SER SEQRES 12 A 441 LYS GLU GLN ASN PHE TYR GLY SER GLN GLU SER ILE ILE SEQRES 13 A 441 ALA LEU CYS THR HIS LEU GLN GLN LEU ILE ARG THR ILE SEQRES 14 A 441 GLU ASP LEU ASP GLU ASN GLN LEU LYS ASP GLU PHE PHE SEQRES 15 A 441 LYS LEU LEU GLN ILE SER LEU TRP GLY ASN LYS CYS ASP SEQRES 16 A 441 LEU SER LEU SER GLY GLY GLU SER SER SER GLN ASN THR SEQRES 17 A 441 ASN VAL LEU ASN SER LEU GLU ASP LEU LYS PRO PHE ILE SEQRES 18 A 441 LEU LEU ASN ASP MET GLU HIS LEU TRP SER LEU LEU SER SEQRES 19 A 441 ASN CYS LYS LYS THR ARG GLU LYS ALA SER ALA THR ARG SEQRES 20 A 441 VAL TYR ILE VAL LEU ASP ASN SER GLY PHE GLU LEU VAL SEQRES 21 A 441 THR ASP LEU ILE LEU ALA ASP PHE LEU LEU SER SER GLU SEQRES 22 A 441 LEU ALA THR GLU VAL HIS PHE TYR GLY LYS THR ILE PRO SEQRES 23 A 441 TRP PHE VAL SER ALA THR THR ILE HIS ASP PHE ASN TRP SEQRES 24 A 441 LEU ILE GLU GLN VAL LYS HIS SER ASN HIS LYS TRP MET SEQRES 25 A 441 SER LYS CYS GLY ALA ASP TRP GLU GLU TYR ILE LYS MET SEQRES 26 A 441 GLY LYS TRP VAL TYR HIS ASN HIS ILE PHE TRP THR LEU SEQRES 27 A 441 PRO HIS GLU TYR CYS ALA MET PRO GLN VAL ALA PRO ASP SEQRES 28 A 441 LEU TYR ALA GLU LEU GLN LYS ALA HIS LEU ILE LEU PHE SEQRES 29 A 441 LYS GLY ASP LEU ASN TYR ARG LYS LEU THR GLY ASP ARG SEQRES 30 A 441 LYS TRP GLU PHE SER VAL PRO PHE HIS GLN ALA LEU ASN SEQRES 31 A 441 GLY PHE HIS PRO ALA PRO LEU CYS THR ILE ARG THR LEU SEQRES 32 A 441 LYS ALA GLU ILE GLN VAL GLY LEU GLN PRO GLY GLN GLY SEQRES 33 A 441 GLU GLN LEU LEU ALA SER GLU PRO SER TRP TRP THR THR SEQRES 34 A 441 GLY LYS TYR GLY ILE PHE GLN TYR ASP GLY PRO LEU SEQRES 1 B 441 MET ALA VAL VAL PRO ALA SER LEU SER GLY GLN ASP VAL SEQRES 2 B 441 GLY SER PHE ALA TYR LEU THR ILE LYS ASP ARG ILE PRO SEQRES 3 B 441 GLN ILE LEU THR LYS VAL ILE ASP THR LEU HIS ARG HIS SEQRES 4 B 441 LYS SER GLU PHE PHE GLU LYS HIS GLY GLU GLU GLY VAL SEQRES 5 B 441 GLU ALA GLU LYS LYS ALA ILE SER LEU LEU SER LYS LEU SEQRES 6 B 441 ARG ASN GLU LEU GLN THR ASP LYS PRO PHE ILE PRO LEU SEQRES 7 B 441 VAL GLU LYS PHE VAL ASP THR ASP ILE TRP ASN GLN TYR SEQRES 8 B 441 LEU GLU TYR GLN GLN SER LEU LEU ASN GLU SER ASP GLY SEQRES 9 B 441 LYS SER ARG TRP PHE TYR SER PRO TRP LEU LEU VAL GLU SEQRES 10 B 441 CYS TYR MET TYR ARG ARG ILE HIS GLU ALA ILE ILE GLN SEQRES 11 B 441 SER PRO PRO ILE ASP TYR PHE ASP VAL PHE LYS GLU SER SEQRES 12 B 441 LYS GLU GLN ASN PHE TYR GLY SER GLN GLU SER ILE ILE SEQRES 13 B 441 ALA LEU CYS THR HIS LEU GLN GLN LEU ILE ARG THR ILE SEQRES 14 B 441 GLU ASP LEU ASP GLU ASN GLN LEU LYS ASP GLU PHE PHE SEQRES 15 B 441 LYS LEU LEU GLN ILE SER LEU TRP GLY ASN LYS CYS ASP SEQRES 16 B 441 LEU SER LEU SER GLY GLY GLU SER SER SER GLN ASN THR SEQRES 17 B 441 ASN VAL LEU ASN SER LEU GLU ASP LEU LYS PRO PHE ILE SEQRES 18 B 441 LEU LEU ASN ASP MET GLU HIS LEU TRP SER LEU LEU SER SEQRES 19 B 441 ASN CYS LYS LYS THR ARG GLU LYS ALA SER ALA THR ARG SEQRES 20 B 441 VAL TYR ILE VAL LEU ASP ASN SER GLY PHE GLU LEU VAL SEQRES 21 B 441 THR ASP LEU ILE LEU ALA ASP PHE LEU LEU SER SER GLU SEQRES 22 B 441 LEU ALA THR GLU VAL HIS PHE TYR GLY LYS THR ILE PRO SEQRES 23 B 441 TRP PHE VAL SER ALA THR THR ILE HIS ASP PHE ASN TRP SEQRES 24 B 441 LEU ILE GLU GLN VAL LYS HIS SER ASN HIS LYS TRP MET SEQRES 25 B 441 SER LYS CYS GLY ALA ASP TRP GLU GLU TYR ILE LYS MET SEQRES 26 B 441 GLY LYS TRP VAL TYR HIS ASN HIS ILE PHE TRP THR LEU SEQRES 27 B 441 PRO HIS GLU TYR CYS ALA MET PRO GLN VAL ALA PRO ASP SEQRES 28 B 441 LEU TYR ALA GLU LEU GLN LYS ALA HIS LEU ILE LEU PHE SEQRES 29 B 441 LYS GLY ASP LEU ASN TYR ARG LYS LEU THR GLY ASP ARG SEQRES 30 B 441 LYS TRP GLU PHE SER VAL PRO PHE HIS GLN ALA LEU ASN SEQRES 31 B 441 GLY PHE HIS PRO ALA PRO LEU CYS THR ILE ARG THR LEU SEQRES 32 B 441 LYS ALA GLU ILE GLN VAL GLY LEU GLN PRO GLY GLN GLY SEQRES 33 B 441 GLU GLN LEU LEU ALA SER GLU PRO SER TRP TRP THR THR SEQRES 34 B 441 GLY LYS TYR GLY ILE PHE GLN TYR ASP GLY PRO LEU HET MG A 501 1 HET MG B 501 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *446(H2 O) HELIX 1 AA1 SER A 15 HIS A 39 1 25 HELIX 2 AA2 HIS A 39 GLY A 48 1 10 HELIX 3 AA3 GLY A 48 THR A 71 1 24 HELIX 4 AA4 ASP A 84 LEU A 98 1 15 HELIX 5 AA5 LEU A 99 GLY A 104 5 6 HELIX 6 AA6 PRO A 112 GLN A 130 1 19 HELIX 7 AA7 PHE A 140 SER A 151 1 12 HELIX 8 AA8 SER A 151 ILE A 169 1 19 HELIX 9 AA9 GLU A 170 LEU A 172 5 3 HELIX 10 AB1 ASP A 173 GLY A 191 1 19 HELIX 11 AB2 LEU A 214 LYS A 218 1 5 HELIX 12 AB3 ASP A 225 THR A 239 1 15 HELIX 13 AB4 SER A 255 SER A 272 1 18 HELIX 14 AB5 THR A 293 HIS A 306 1 14 HELIX 15 AB6 HIS A 309 MET A 325 1 17 HELIX 16 AB7 HIS A 333 LEU A 338 5 6 HELIX 17 AB8 GLU A 341 CYS A 343 5 3 HELIX 18 AB9 ALA A 344 ALA A 349 1 6 HELIX 19 AC1 ALA A 349 GLN A 357 1 9 HELIX 20 AC2 GLY A 366 THR A 374 1 9 HELIX 21 AC3 PRO A 384 LEU A 389 1 6 HELIX 22 AC4 GLY A 414 GLU A 423 1 10 HELIX 23 AC5 SER A 425 THR A 429 5 5 HELIX 24 AC6 SER B 15 HIS B 39 1 25 HELIX 25 AC7 HIS B 39 GLY B 48 1 10 HELIX 26 AC8 GLY B 48 THR B 71 1 24 HELIX 27 AC9 ASP B 84 LEU B 98 1 15 HELIX 28 AD1 LEU B 99 GLY B 104 5 6 HELIX 29 AD2 PRO B 112 GLN B 130 1 19 HELIX 30 AD3 PHE B 140 SER B 151 1 12 HELIX 31 AD4 SER B 151 THR B 168 1 18 HELIX 32 AD5 ILE B 169 LEU B 172 5 4 HELIX 33 AD6 ASP B 173 TRP B 190 1 18 HELIX 34 AD7 LEU B 214 LYS B 218 1 5 HELIX 35 AD8 ASP B 225 THR B 239 1 15 HELIX 36 AD9 SER B 255 SER B 272 1 18 HELIX 37 AE1 THR B 293 HIS B 306 1 14 HELIX 38 AE2 HIS B 309 MET B 325 1 17 HELIX 39 AE3 HIS B 333 LEU B 338 5 6 HELIX 40 AE4 GLU B 341 CYS B 343 5 3 HELIX 41 AE5 ALA B 344 ALA B 349 1 6 HELIX 42 AE6 ALA B 349 GLN B 357 1 9 HELIX 43 AE7 GLY B 366 THR B 374 1 9 HELIX 44 AE8 PRO B 384 LEU B 389 1 6 HELIX 45 AE9 GLY B 414 GLU B 423 1 10 HELIX 46 AF1 SER B 425 THR B 429 5 5 SHEET 1 AA1 7 ILE A 221 ASN A 224 0 SHEET 2 AA1 7 GLY A 433 ASP A 438 1 O PHE A 435 N LEU A 223 SHEET 3 AA1 7 LEU A 397 THR A 402 -1 N LEU A 397 O ASP A 438 SHEET 4 AA1 7 LEU A 361 LYS A 365 1 N PHE A 364 O ILE A 400 SHEET 5 AA1 7 ARG A 247 VAL A 251 1 N TYR A 249 O LEU A 363 SHEET 6 AA1 7 GLU A 277 TYR A 281 1 O HIS A 279 N ILE A 250 SHEET 7 AA1 7 TRP A 328 HIS A 331 1 O VAL A 329 N PHE A 280 SHEET 1 AA2 7 ILE B 221 ASN B 224 0 SHEET 2 AA2 7 GLY B 433 ASP B 438 1 O PHE B 435 N LEU B 223 SHEET 3 AA2 7 LEU B 397 THR B 402 -1 N LEU B 397 O ASP B 438 SHEET 4 AA2 7 LEU B 361 LYS B 365 1 N PHE B 364 O ILE B 400 SHEET 5 AA2 7 ARG B 247 VAL B 251 1 N VAL B 251 O LEU B 363 SHEET 6 AA2 7 GLU B 277 TYR B 281 1 O HIS B 279 N ILE B 250 SHEET 7 AA2 7 TRP B 328 HIS B 331 1 O VAL B 329 N PHE B 280 LINK MG MG A 501 O HOH A 652 1555 1555 2.01 LINK MG MG A 501 O HOH A 749 1555 1555 1.81 LINK MG MG A 501 O HOH B 655 1555 1555 2.44 LINK MG MG A 501 O HOH B 666 1555 1555 2.05 LINK MG MG A 501 O HOH B 689 1555 1555 2.40 LINK MG MG A 501 O HOH B 789 1555 1555 1.75 LINK O HOH A 640 MG MG B 501 1555 1555 2.02 LINK O HOH A 680 MG MG B 501 1555 1555 1.97 LINK O HOH A 815 MG MG B 501 1555 1555 2.16 LINK MG MG B 501 O HOH B 616 1555 1555 2.10 LINK MG MG B 501 O HOH B 683 1555 1555 2.27 LINK MG MG B 501 O HOH B 760 1555 1555 2.10 CISPEP 1 PRO A 132 PRO A 133 0 9.42 CISPEP 2 PRO B 132 PRO B 133 0 11.25 SITE 1 AC1 6 HOH A 652 HOH A 749 HOH B 655 HOH B 666 SITE 2 AC1 6 HOH B 689 HOH B 789 SITE 1 AC2 7 HOH A 640 HOH A 680 HOH A 815 GLN B 96 SITE 2 AC2 7 HOH B 616 HOH B 683 HOH B 760 CRYST1 91.260 194.691 114.940 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010958 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005136 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008700 0.00000