HEADER TRANSFERASE/ANTIBIOTIC 11-OCT-19 6UN8 TITLE WILD TYPE ANT BOUND TO NEOMYCIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOGLYCOSIDE NUCLEOTIDYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ANT, KANAMYCIN NUCLEOTIDYLTRANSFERASE; COMPND 5 EC: 2.7.7.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: KNT, KAN; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 83333 KEYWDS ANTIBIOTIC RESISTANCE, NEOMYCIN, TRANSFERASE-ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.J.CUNEO,B.SELVARAJ REVDAT 2 11-OCT-23 6UN8 1 LINK REVDAT 1 06-MAY-20 6UN8 0 JRNL AUTH B.SELVARAJ,S.KOCAMAN,M.TRIFAS,E.H.SERPERSU,M.J.CUNEO JRNL TITL "CATCH AND RELEASE": A VARIATION OF THE ARCHETYPAL JRNL TITL 2 NUCLEOTIDYLTRANSFER REACTION JRNL REF ACS CATAL V. 10 3548 2020 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/ACSCATAL.9B05201 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 68577 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1989 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.5580 - 3.9728 0.96 4922 142 0.1467 0.1595 REMARK 3 2 3.9728 - 3.1534 0.97 4739 146 0.1527 0.1772 REMARK 3 3 3.1534 - 2.7549 0.99 4815 137 0.1823 0.2086 REMARK 3 4 2.7549 - 2.5030 0.99 4769 145 0.1845 0.2189 REMARK 3 5 2.5030 - 2.3236 0.99 4769 139 0.1791 0.2110 REMARK 3 6 2.3236 - 2.1866 0.99 4760 140 0.1827 0.1769 REMARK 3 7 2.1866 - 2.0771 1.00 4769 144 0.1795 0.2215 REMARK 3 8 2.0771 - 1.9867 1.00 4740 151 0.1906 0.1976 REMARK 3 9 1.9867 - 1.9102 1.00 4727 147 0.1908 0.2322 REMARK 3 10 1.9102 - 1.8443 1.00 4768 138 0.2040 0.2389 REMARK 3 11 1.8443 - 1.7866 1.00 4745 131 0.2043 0.2421 REMARK 3 12 1.7866 - 1.7355 1.00 4730 146 0.2080 0.2432 REMARK 3 13 1.7355 - 1.6898 1.00 4733 138 0.2195 0.2688 REMARK 3 14 1.6898 - 1.6500 0.97 4602 145 0.2400 0.2719 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 2 THROUGH 38 OR RESID REMARK 3 40 THROUGH 48 OR RESID 50 THROUGH 53 OR REMARK 3 RESID 56 THROUGH 64 OR RESID 66 THROUGH REMARK 3 86 OR RESID 88 THROUGH 93 OR RESID 95 REMARK 3 THROUGH 104 OR RESID 106 THROUGH 111 OR REMARK 3 RESID 113 THROUGH 124 OR RESID 126 REMARK 3 THROUGH 137 OR RESID 140 THROUGH 202 OR REMARK 3 RESID 204 THROUGH 225 OR RESID 227 REMARK 3 THROUGH 228 OR RESID 230 THROUGH 253)) REMARK 3 SELECTION : (CHAIN B AND (RESID 2 THROUGH 38 OR RESID REMARK 3 40 THROUGH 48 OR RESID 50 THROUGH 53 OR REMARK 3 RESID 56 THROUGH 64 OR RESID 66 THROUGH REMARK 3 86 OR RESID 88 THROUGH 93 OR RESID 95 REMARK 3 THROUGH 104 OR RESID 106 THROUGH 111 OR REMARK 3 RESID 113 THROUGH 124 OR RESID 126 REMARK 3 THROUGH 137 OR RESID 140 THROUGH 202 OR REMARK 3 RESID 204 THROUGH 225 OR RESID 227 REMARK 3 THROUGH 228 OR RESID 230 THROUGH 253)) REMARK 3 ATOM PAIRS NUMBER : 1358 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UN8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1000244884. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68631 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.649 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1KNY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16-17% PEG 8K, 0.1 M TRIS PH 7-8, 0.1 REMARK 280 -0.2 M MGCL2, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.33050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.11550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.89700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.11550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.33050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.89700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 421 O HOH A 615 1.98 REMARK 500 O HOH B 479 O HOH B 493 2.00 REMARK 500 O HOH A 404 O HOH A 506 2.02 REMARK 500 NE2 GLN B 102 O HOH B 401 2.04 REMARK 500 O HOH B 479 O HOH B 585 2.04 REMARK 500 O HOH A 572 O HOH A 615 2.06 REMARK 500 OD1 ASP A 25 O HOH A 401 2.10 REMARK 500 O HOH B 607 O HOH B 621 2.11 REMARK 500 NZ LYS B 118 O HOH B 402 2.17 REMARK 500 NZ LYS A 118 O HOH A 402 2.18 REMARK 500 OG SER B 125 O HOH B 403 2.19 REMARK 500 O HOH B 595 O HOH B 612 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 401 O HOH A 458 2454 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 236 CB GLU A 236 CG -0.145 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 236 CB - CA - C ANGL. DEV. = -13.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 37 -165.90 -125.38 REMARK 500 GLU A 63 92.85 -162.58 REMARK 500 TYR B 37 -164.41 -124.57 REMARK 500 GLU B 63 94.40 -161.93 REMARK 500 PRO B 252 31.42 -89.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 NMY A 300 O4 REMARK 620 2 HOH A 446 O 101.6 REMARK 620 3 GLU B 145 OE1 79.4 135.4 REMARK 620 4 GLU B 145 OE2 108.5 89.6 49.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NMY A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NMY B 302 DBREF 6UN8 A 1 253 UNP P05057 KANU_STAAU 1 253 DBREF 6UN8 B 1 253 UNP P05057 KANU_STAAU 1 253 SEQRES 1 A 253 MET ASN GLY PRO ILE ILE MET THR ARG GLU GLU ARG MET SEQRES 2 A 253 LYS ILE VAL HIS GLU ILE LYS GLU ARG ILE LEU ASP LYS SEQRES 3 A 253 TYR GLY ASP ASP VAL LYS ALA ILE GLY VAL TYR GLY SER SEQRES 4 A 253 LEU GLY ARG GLN THR ASP GLY PRO TYR SER ASP ILE GLU SEQRES 5 A 253 MET MET CYS VAL MET SER THR GLU GLU ALA GLU PHE SER SEQRES 6 A 253 HIS GLU TRP THR THR GLY GLU TRP LYS VAL GLU VAL ASN SEQRES 7 A 253 PHE ASP SER GLU GLU ILE LEU LEU ASP TYR ALA SER GLN SEQRES 8 A 253 VAL GLU SER ASP TRP PRO LEU THR HIS GLY GLN PHE PHE SEQRES 9 A 253 SER ILE LEU PRO ILE TYR ASP SER GLY GLY TYR LEU GLU SEQRES 10 A 253 LYS VAL TYR GLN THR ALA LYS SER VAL GLU ALA GLN THR SEQRES 11 A 253 PHE HIS ASP ALA ILE CYS ALA LEU ILE VAL GLU GLU LEU SEQRES 12 A 253 PHE GLU TYR ALA GLY LYS TRP ARG ASN ILE ARG VAL GLN SEQRES 13 A 253 GLY PRO THR THR PHE LEU PRO SER LEU THR VAL GLN VAL SEQRES 14 A 253 ALA MET ALA GLY ALA MET LEU ILE GLY LEU HIS HIS ARG SEQRES 15 A 253 ILE CYS TYR THR THR SER ALA SER VAL LEU THR GLU ALA SEQRES 16 A 253 VAL LYS GLN SER ASP LEU PRO SER GLY TYR ASP HIS LEU SEQRES 17 A 253 CYS GLN PHE VAL MET SER GLY GLN LEU SER ASP SER GLU SEQRES 18 A 253 LYS LEU LEU GLU SER LEU GLU ASN PHE TRP ASN GLY ILE SEQRES 19 A 253 GLN GLU TRP THR GLU ARG HIS GLY TYR ILE VAL ASP VAL SEQRES 20 A 253 SER LYS ARG ILE PRO PHE SEQRES 1 B 253 MET ASN GLY PRO ILE ILE MET THR ARG GLU GLU ARG MET SEQRES 2 B 253 LYS ILE VAL HIS GLU ILE LYS GLU ARG ILE LEU ASP LYS SEQRES 3 B 253 TYR GLY ASP ASP VAL LYS ALA ILE GLY VAL TYR GLY SER SEQRES 4 B 253 LEU GLY ARG GLN THR ASP GLY PRO TYR SER ASP ILE GLU SEQRES 5 B 253 MET MET CYS VAL MET SER THR GLU GLU ALA GLU PHE SER SEQRES 6 B 253 HIS GLU TRP THR THR GLY GLU TRP LYS VAL GLU VAL ASN SEQRES 7 B 253 PHE ASP SER GLU GLU ILE LEU LEU ASP TYR ALA SER GLN SEQRES 8 B 253 VAL GLU SER ASP TRP PRO LEU THR HIS GLY GLN PHE PHE SEQRES 9 B 253 SER ILE LEU PRO ILE TYR ASP SER GLY GLY TYR LEU GLU SEQRES 10 B 253 LYS VAL TYR GLN THR ALA LYS SER VAL GLU ALA GLN THR SEQRES 11 B 253 PHE HIS ASP ALA ILE CYS ALA LEU ILE VAL GLU GLU LEU SEQRES 12 B 253 PHE GLU TYR ALA GLY LYS TRP ARG ASN ILE ARG VAL GLN SEQRES 13 B 253 GLY PRO THR THR PHE LEU PRO SER LEU THR VAL GLN VAL SEQRES 14 B 253 ALA MET ALA GLY ALA MET LEU ILE GLY LEU HIS HIS ARG SEQRES 15 B 253 ILE CYS TYR THR THR SER ALA SER VAL LEU THR GLU ALA SEQRES 16 B 253 VAL LYS GLN SER ASP LEU PRO SER GLY TYR ASP HIS LEU SEQRES 17 B 253 CYS GLN PHE VAL MET SER GLY GLN LEU SER ASP SER GLU SEQRES 18 B 253 LYS LEU LEU GLU SER LEU GLU ASN PHE TRP ASN GLY ILE SEQRES 19 B 253 GLN GLU TRP THR GLU ARG HIS GLY TYR ILE VAL ASP VAL SEQRES 20 B 253 SER LYS ARG ILE PRO PHE HET NMY A 300 42 HET MG B 301 1 HET NMY B 302 42 HETNAM NMY NEOMYCIN HETNAM MG MAGNESIUM ION HETSYN NMY MYCIFRADIN; NEOMAS; PIMAVECORT; VONAMYCIN FORMUL 3 NMY 2(C23 H46 N6 O13) FORMUL 4 MG MG 2+ FORMUL 6 HOH *500(H2 O) HELIX 1 AA1 THR A 8 GLY A 28 1 21 HELIX 2 AA2 GLY A 38 ARG A 42 1 5 HELIX 3 AA3 GLU A 82 GLN A 91 1 10 HELIX 4 AA4 ASP A 95 HIS A 100 1 6 HELIX 5 AA5 GLY A 101 SER A 105 5 5 HELIX 6 AA6 GLY A 114 SER A 125 1 12 HELIX 7 AA7 GLU A 127 GLU A 142 1 16 HELIX 8 AA8 GLU A 142 GLY A 157 1 16 HELIX 9 AA9 PRO A 158 THR A 160 5 3 HELIX 10 AB1 PHE A 161 ARG A 182 1 22 HELIX 11 AB2 THR A 187 ALA A 189 5 3 HELIX 12 AB3 SER A 190 LYS A 197 1 8 HELIX 13 AB4 GLY A 204 GLY A 215 1 12 HELIX 14 AB5 ASP A 219 GLY A 242 1 24 HELIX 15 AB6 THR B 8 GLY B 28 1 21 HELIX 16 AB7 GLY B 38 ARG B 42 1 5 HELIX 17 AB8 GLU B 82 SER B 90 1 9 HELIX 18 AB9 ASP B 95 HIS B 100 1 6 HELIX 19 AC1 GLY B 101 SER B 105 5 5 HELIX 20 AC2 GLY B 114 SER B 125 1 12 HELIX 21 AC3 GLU B 127 GLU B 142 1 16 HELIX 22 AC4 GLU B 142 GLY B 157 1 16 HELIX 23 AC5 PRO B 158 THR B 160 5 3 HELIX 24 AC6 PHE B 161 ARG B 182 1 22 HELIX 25 AC7 THR B 187 ALA B 189 5 3 HELIX 26 AC8 SER B 190 LYS B 197 1 8 HELIX 27 AC9 GLY B 204 GLY B 215 1 12 HELIX 28 AD1 ASP B 219 GLY B 242 1 24 SHEET 1 AA1 5 GLU A 63 THR A 69 0 SHEET 2 AA1 5 LYS A 74 SER A 81 -1 O PHE A 79 N PHE A 64 SHEET 3 AA1 5 ILE A 51 MET A 57 1 N MET A 57 O ASP A 80 SHEET 4 AA1 5 VAL A 31 TYR A 37 -1 N LYS A 32 O VAL A 56 SHEET 5 AA1 5 LEU A 107 ASP A 111 -1 O TYR A 110 N ILE A 34 SHEET 1 AA2 5 GLU B 63 THR B 69 0 SHEET 2 AA2 5 LYS B 74 SER B 81 -1 O PHE B 79 N PHE B 64 SHEET 3 AA2 5 ILE B 51 MET B 57 1 N MET B 57 O ASP B 80 SHEET 4 AA2 5 VAL B 31 TYR B 37 -1 N LYS B 32 O VAL B 56 SHEET 5 AA2 5 LEU B 107 ASP B 111 -1 O LEU B 107 N VAL B 36 LINK O4 NMY A 300 MG MG B 301 1555 1555 2.65 LINK O HOH A 446 MG MG B 301 1555 1555 2.60 LINK OE1 GLU B 145 MG MG B 301 1555 1555 2.86 LINK OE2 GLU B 145 MG MG B 301 1555 1555 2.13 CISPEP 1 GLY A 3 PRO A 4 0 6.20 CISPEP 2 GLY A 157 PRO A 158 0 -0.11 CISPEP 3 GLY B 3 PRO B 4 0 9.09 CISPEP 4 GLY B 157 PRO B 158 0 -0.17 SITE 1 AC1 22 TYR A 37 GLU A 52 GLU A 63 GLU A 67 SITE 2 AC1 22 GLU A 76 ASP A 80 LEU A 85 TYR A 88 SITE 3 AC1 22 GLN A 102 HOH A 442 HOH A 449 HOH A 479 SITE 4 AC1 22 HOH A 519 HOH A 525 HOH A 538 HOH A 548 SITE 5 AC1 22 HOH A 557 HOH A 582 HOH A 584 GLU B 141 SITE 6 AC1 22 GLU B 145 MG B 301 SITE 1 AC2 5 LYS A 74 GLU A 76 NMY A 300 HOH A 446 SITE 2 AC2 5 GLU B 145 SITE 1 AC3 17 GLU A 141 GLU A 145 HOH A 411 TYR B 37 SITE 2 AC3 17 GLU B 52 GLU B 63 GLU B 67 GLU B 76 SITE 3 AC3 17 ASP B 80 TYR B 88 GLN B 102 HOH B 427 SITE 4 AC3 17 HOH B 437 HOH B 512 HOH B 549 HOH B 578 SITE 5 AC3 17 HOH B 580 CRYST1 56.661 97.794 102.231 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017649 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010226 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009782 0.00000