HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 12-OCT-19 6UNJ TITLE HUMAN CYP3A4 BOUND TO AN INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450 3A4; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 1,8-CINEOLE 2-EXO-MONOOXYGENASE,ALBENDAZOLE MONOOXYGENASE, COMPND 5 ALBENDAZOLE SULFOXIDASE,CYPIIIA3,CYPIIIA4,CHOLESTEROL 25-HYDROXYLASE, COMPND 6 CYTOCHROME P450 3A3,CYTOCHROME P450 HLP,CYTOCHROME P450 NF-25, COMPND 7 CYTOCHROME P450-PCN1,NIFEDIPINE OXIDASE,QUININE 3-MONOOXYGENASE, COMPND 8 TAUROCHENODEOXYCHOLATE 6-ALPHA-HYDROXYLASE; COMPND 9 EC: 1.14.14.1,1.14.14.56,1.14.14.73,1.14.14.55; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CYP3A4, CYP3A3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: C41; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PCWORI KEYWDS CYP3A4, INHIBITOR, COMPLEX, OXIDOREDUCTASE, OXIDOREDUCTASE- KEYWDS 2 OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR I.SEVRIOUKOVA REVDAT 5 11-OCT-23 6UNJ 1 REMARK REVDAT 4 04-MAR-20 6UNJ 1 JRNL REVDAT 3 26-FEB-20 6UNJ 1 JRNL REVDAT 2 12-FEB-20 6UNJ 1 REMARK REVDAT 1 05-FEB-20 6UNJ 0 JRNL AUTH E.R.SAMUELS,I.F.SEVRIOUKOVA JRNL TITL AN INCREASE IN SIDE-GROUP HYDROPHOBICITY LARGELY IMPROVES JRNL TITL 2 THE POTENCY OF RITONAVIR-LIKE INHIBITORS OF CYP3A4. JRNL REF BIOORG.MED.CHEM. V. 28 15349 2020 JRNL REFN ESSN 1464-3391 JRNL PMID 32044230 JRNL DOI 10.1016/J.BMC.2020.115349 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 3 NUMBER OF REFLECTIONS : 32518 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.255 REMARK 3 R VALUE (WORKING SET) : 0.253 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1622 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.2940 - 5.9490 0.91 2575 160 0.1919 0.2317 REMARK 3 2 5.9490 - 4.7233 0.94 2627 150 0.2366 0.2465 REMARK 3 3 4.7233 - 4.1266 0.95 2585 189 0.2208 0.2743 REMARK 3 4 4.1266 - 3.7495 0.89 2501 124 0.2577 0.2932 REMARK 3 5 3.7495 - 3.4808 0.95 2680 127 0.2784 0.3708 REMARK 3 6 3.4808 - 3.2757 0.95 2675 107 0.3104 0.3691 REMARK 3 7 3.2757 - 3.1116 0.90 2524 128 0.3462 0.4243 REMARK 3 8 3.1116 - 2.9762 0.88 2457 126 0.3740 0.3740 REMARK 3 9 2.9762 - 2.8617 0.92 2546 148 0.3955 0.4438 REMARK 3 10 2.8617 - 2.7629 0.93 2551 147 0.4478 0.4942 REMARK 3 11 2.7629 - 2.6765 0.93 2595 119 0.4949 0.5326 REMARK 3 12 2.6765 - 2.6000 0.91 2580 97 0.5060 0.4860 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.570 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 45.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 91.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 147.5 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 7491 REMARK 3 ANGLE : 0.674 10158 REMARK 3 CHIRALITY : 0.041 1118 REMARK 3 PLANARITY : 0.005 1269 REMARK 3 DIHEDRAL : 14.357 4510 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -27.7675 -25.5309 108.6095 REMARK 3 T TENSOR REMARK 3 T11: 0.6923 T22: 0.6887 REMARK 3 T33: 0.7293 T12: -0.1028 REMARK 3 T13: -0.0213 T23: 0.0912 REMARK 3 L TENSOR REMARK 3 L11: 0.7407 L22: 1.6065 REMARK 3 L33: 2.1615 L12: -0.8275 REMARK 3 L13: 0.5020 L23: -1.6892 REMARK 3 S TENSOR REMARK 3 S11: -0.2122 S12: -0.3257 S13: 0.0265 REMARK 3 S21: 0.8099 S22: 0.0782 S23: -0.1748 REMARK 3 S31: -0.5343 S32: -0.2780 S33: -0.4164 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UNJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1000244902. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 6.0-7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32836 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 77.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 3.05300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5VCC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, SODIUM MALONATE, MICROBATCH, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 76.49450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.04000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 76.49450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 49.04000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -104.59779 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 154.83932 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -56.20658 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 309.67863 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 74890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -135.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -104.59779 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 154.83932 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 -24.19560 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 49.04000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 -77.41966 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 -80.40219 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 49.04000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 232.25898 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 21 REMARK 465 ALA A 22 REMARK 465 TYR A 23 REMARK 465 LEU A 24 REMARK 465 TYR A 25 REMARK 465 GLY A 26 REMARK 465 THR A 27 REMARK 465 HIS A 28 REMARK 465 ASN A 198 REMARK 465 PRO A 199 REMARK 465 GLN A 200 REMARK 465 ASP A 201 REMARK 465 PRO A 202 REMARK 465 PHE A 203 REMARK 465 VAL A 204 REMARK 465 GLU A 205 REMARK 465 ARG A 260 REMARK 465 LEU A 261 REMARK 465 GLU A 262 REMARK 465 ASP A 263 REMARK 465 THR A 264 REMARK 465 GLN A 265 REMARK 465 LYS A 266 REMARK 465 HIS A 267 REMARK 465 ARG A 268 REMARK 465 SER A 281 REMARK 465 LYS A 282 REMARK 465 GLU A 283 REMARK 465 THR A 284 REMARK 465 GLU A 285 REMARK 465 SER A 286 REMARK 465 HIS A 287 REMARK 465 LYS A 288 REMARK 465 ASP A 497 REMARK 465 GLY A 498 REMARK 465 THR A 499 REMARK 465 VAL A 500 REMARK 465 SER A 501 REMARK 465 GLY A 502 REMARK 465 ALA A 503 REMARK 465 HIS A 504 REMARK 465 HIS A 505 REMARK 465 HIS A 506 REMARK 465 HIS A 507 REMARK 465 MET B 21 REMARK 465 ALA B 22 REMARK 465 TYR B 23 REMARK 465 LEU B 24 REMARK 465 TYR B 25 REMARK 465 GLY B 26 REMARK 465 THR B 27 REMARK 465 HIS B 28 REMARK 465 SER B 195 REMARK 465 LEU B 196 REMARK 465 ASN B 197 REMARK 465 ASN B 198 REMARK 465 PRO B 199 REMARK 465 GLN B 200 REMARK 465 ASP B 201 REMARK 465 PRO B 202 REMARK 465 PHE B 203 REMARK 465 VAL B 204 REMARK 465 GLU B 205 REMARK 465 ASN B 206 REMARK 465 THR B 207 REMARK 465 ASP B 214 REMARK 465 PHE B 215 REMARK 465 LEU B 216 REMARK 465 ASP B 217 REMARK 465 SER B 259 REMARK 465 ARG B 260 REMARK 465 LEU B 261 REMARK 465 GLU B 262 REMARK 465 ASP B 263 REMARK 465 THR B 264 REMARK 465 GLN B 265 REMARK 465 LYS B 266 REMARK 465 HIS B 267 REMARK 465 ARG B 268 REMARK 465 SER B 281 REMARK 465 LYS B 282 REMARK 465 GLU B 283 REMARK 465 THR B 284 REMARK 465 GLU B 285 REMARK 465 SER B 286 REMARK 465 HIS B 287 REMARK 465 LYS B 288 REMARK 465 ASP B 497 REMARK 465 GLY B 498 REMARK 465 THR B 499 REMARK 465 VAL B 500 REMARK 465 SER B 501 REMARK 465 GLY B 502 REMARK 465 ALA B 503 REMARK 465 HIS B 504 REMARK 465 HIS B 505 REMARK 465 HIS B 506 REMARK 465 HIS B 507 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 MET B 395 CA CB CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 46 -55.29 67.73 REMARK 500 ASP A 76 79.35 -106.57 REMARK 500 GLU A 97 38.00 -90.70 REMARK 500 VAL A 101 -60.14 -124.28 REMARK 500 PHE A 102 59.47 -95.64 REMARK 500 ASP A 123 -127.21 55.09 REMARK 500 PHE A 189 -88.06 -119.33 REMARK 500 ASP A 194 72.86 -113.06 REMARK 500 THR A 207 3.40 -63.92 REMARK 500 LYS A 208 45.72 74.71 REMARK 500 LYS A 209 13.73 -68.20 REMARK 500 LEU A 210 69.45 -68.64 REMARK 500 ARG A 212 -151.71 -100.72 REMARK 500 LEU A 216 -145.16 173.13 REMARK 500 ASP A 217 -167.05 -65.09 REMARK 500 PRO A 218 149.04 -34.57 REMARK 500 ASN A 237 18.76 55.65 REMARK 500 LYS A 257 44.35 -146.50 REMARK 500 TYR A 307 -60.18 -94.47 REMARK 500 ILE A 369 1.87 -61.95 REMARK 500 MET A 371 -52.56 68.38 REMARK 500 ASN A 426 34.11 -91.69 REMARK 500 LEU A 479 7.28 -64.27 REMARK 500 GLU A 486 -71.99 -59.32 REMARK 500 PHE B 46 -51.31 69.32 REMARK 500 ASP B 76 76.61 -106.62 REMARK 500 LYS B 96 -70.74 -69.00 REMARK 500 GLU B 97 35.37 -89.24 REMARK 500 VAL B 101 -61.67 -126.03 REMARK 500 ASP B 123 -128.66 57.25 REMARK 500 PHE B 189 -88.09 -119.33 REMARK 500 LYS B 209 13.09 -67.06 REMARK 500 LEU B 210 68.05 -67.52 REMARK 500 ASN B 237 19.76 57.46 REMARK 500 LYS B 257 44.07 -143.55 REMARK 500 TYR B 307 -60.49 -94.05 REMARK 500 ILE B 369 1.67 -67.78 REMARK 500 MET B 371 -61.57 66.37 REMARK 500 HIS B 402 2.31 -69.52 REMARK 500 ASN B 426 30.27 -89.67 REMARK 500 LEU B 479 7.36 -64.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QDY A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QDY B 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6UNE RELATED DB: PDB REMARK 900 RELATED ID: 6UNG RELATED DB: PDB REMARK 900 RELATED ID: 6UNH RELATED DB: PDB REMARK 900 RELATED ID: 6UNI RELATED DB: PDB DBREF 6UNJ A 23 503 UNP P08684 CP3A4_HUMAN 23 503 DBREF 6UNJ B 23 503 UNP P08684 CP3A4_HUMAN 23 503 SEQADV 6UNJ MET A 21 UNP P08684 INITIATING METHIONINE SEQADV 6UNJ ALA A 22 UNP P08684 EXPRESSION TAG SEQADV 6UNJ HIS A 504 UNP P08684 EXPRESSION TAG SEQADV 6UNJ HIS A 505 UNP P08684 EXPRESSION TAG SEQADV 6UNJ HIS A 506 UNP P08684 EXPRESSION TAG SEQADV 6UNJ HIS A 507 UNP P08684 EXPRESSION TAG SEQADV 6UNJ MET B 21 UNP P08684 INITIATING METHIONINE SEQADV 6UNJ ALA B 22 UNP P08684 EXPRESSION TAG SEQADV 6UNJ HIS B 504 UNP P08684 EXPRESSION TAG SEQADV 6UNJ HIS B 505 UNP P08684 EXPRESSION TAG SEQADV 6UNJ HIS B 506 UNP P08684 EXPRESSION TAG SEQADV 6UNJ HIS B 507 UNP P08684 EXPRESSION TAG SEQRES 1 A 487 MET ALA TYR LEU TYR GLY THR HIS SER HIS GLY LEU PHE SEQRES 2 A 487 LYS LYS LEU GLY ILE PRO GLY PRO THR PRO LEU PRO PHE SEQRES 3 A 487 LEU GLY ASN ILE LEU SER TYR HIS LYS GLY PHE CYS MET SEQRES 4 A 487 PHE ASP MET GLU CYS HIS LYS LYS TYR GLY LYS VAL TRP SEQRES 5 A 487 GLY PHE TYR ASP GLY GLN GLN PRO VAL LEU ALA ILE THR SEQRES 6 A 487 ASP PRO ASP MET ILE LYS THR VAL LEU VAL LYS GLU CYS SEQRES 7 A 487 TYR SER VAL PHE THR ASN ARG ARG PRO PHE GLY PRO VAL SEQRES 8 A 487 GLY PHE MET LYS SER ALA ILE SER ILE ALA GLU ASP GLU SEQRES 9 A 487 GLU TRP LYS ARG LEU ARG SER LEU LEU SER PRO THR PHE SEQRES 10 A 487 THR SER GLY LYS LEU LYS GLU MET VAL PRO ILE ILE ALA SEQRES 11 A 487 GLN TYR GLY ASP VAL LEU VAL ARG ASN LEU ARG ARG GLU SEQRES 12 A 487 ALA GLU THR GLY LYS PRO VAL THR LEU LYS ASP VAL PHE SEQRES 13 A 487 GLY ALA TYR SER MET ASP VAL ILE THR SER THR SER PHE SEQRES 14 A 487 GLY VAL ASN ILE ASP SER LEU ASN ASN PRO GLN ASP PRO SEQRES 15 A 487 PHE VAL GLU ASN THR LYS LYS LEU LEU ARG PHE ASP PHE SEQRES 16 A 487 LEU ASP PRO PHE PHE LEU SER ILE THR VAL PHE PRO PHE SEQRES 17 A 487 LEU ILE PRO ILE LEU GLU VAL LEU ASN ILE CYS VAL PHE SEQRES 18 A 487 PRO ARG GLU VAL THR ASN PHE LEU ARG LYS SER VAL LYS SEQRES 19 A 487 ARG MET LYS GLU SER ARG LEU GLU ASP THR GLN LYS HIS SEQRES 20 A 487 ARG VAL ASP PHE LEU GLN LEU MET ILE ASP SER GLN ASN SEQRES 21 A 487 SER LYS GLU THR GLU SER HIS LYS ALA LEU SER ASP LEU SEQRES 22 A 487 GLU LEU VAL ALA GLN SER ILE ILE PHE ILE PHE ALA GLY SEQRES 23 A 487 TYR GLU THR THR SER SER VAL LEU SER PHE ILE MET TYR SEQRES 24 A 487 GLU LEU ALA THR HIS PRO ASP VAL GLN GLN LYS LEU GLN SEQRES 25 A 487 GLU GLU ILE ASP ALA VAL LEU PRO ASN LYS ALA PRO PRO SEQRES 26 A 487 THR TYR ASP THR VAL LEU GLN MET GLU TYR LEU ASP MET SEQRES 27 A 487 VAL VAL ASN GLU THR LEU ARG LEU PHE PRO ILE ALA MET SEQRES 28 A 487 ARG LEU GLU ARG VAL CYS LYS LYS ASP VAL GLU ILE ASN SEQRES 29 A 487 GLY MET PHE ILE PRO LYS GLY VAL VAL VAL MET ILE PRO SEQRES 30 A 487 SER TYR ALA LEU HIS ARG ASP PRO LYS TYR TRP THR GLU SEQRES 31 A 487 PRO GLU LYS PHE LEU PRO GLU ARG PHE SER LYS LYS ASN SEQRES 32 A 487 LYS ASP ASN ILE ASP PRO TYR ILE TYR THR PRO PHE GLY SEQRES 33 A 487 SER GLY PRO ARG ASN CYS ILE GLY MET ARG PHE ALA LEU SEQRES 34 A 487 MET ASN MET LYS LEU ALA LEU ILE ARG VAL LEU GLN ASN SEQRES 35 A 487 PHE SER PHE LYS PRO CYS LYS GLU THR GLN ILE PRO LEU SEQRES 36 A 487 LYS LEU SER LEU GLY GLY LEU LEU GLN PRO GLU LYS PRO SEQRES 37 A 487 VAL VAL LEU LYS VAL GLU SER ARG ASP GLY THR VAL SER SEQRES 38 A 487 GLY ALA HIS HIS HIS HIS SEQRES 1 B 487 MET ALA TYR LEU TYR GLY THR HIS SER HIS GLY LEU PHE SEQRES 2 B 487 LYS LYS LEU GLY ILE PRO GLY PRO THR PRO LEU PRO PHE SEQRES 3 B 487 LEU GLY ASN ILE LEU SER TYR HIS LYS GLY PHE CYS MET SEQRES 4 B 487 PHE ASP MET GLU CYS HIS LYS LYS TYR GLY LYS VAL TRP SEQRES 5 B 487 GLY PHE TYR ASP GLY GLN GLN PRO VAL LEU ALA ILE THR SEQRES 6 B 487 ASP PRO ASP MET ILE LYS THR VAL LEU VAL LYS GLU CYS SEQRES 7 B 487 TYR SER VAL PHE THR ASN ARG ARG PRO PHE GLY PRO VAL SEQRES 8 B 487 GLY PHE MET LYS SER ALA ILE SER ILE ALA GLU ASP GLU SEQRES 9 B 487 GLU TRP LYS ARG LEU ARG SER LEU LEU SER PRO THR PHE SEQRES 10 B 487 THR SER GLY LYS LEU LYS GLU MET VAL PRO ILE ILE ALA SEQRES 11 B 487 GLN TYR GLY ASP VAL LEU VAL ARG ASN LEU ARG ARG GLU SEQRES 12 B 487 ALA GLU THR GLY LYS PRO VAL THR LEU LYS ASP VAL PHE SEQRES 13 B 487 GLY ALA TYR SER MET ASP VAL ILE THR SER THR SER PHE SEQRES 14 B 487 GLY VAL ASN ILE ASP SER LEU ASN ASN PRO GLN ASP PRO SEQRES 15 B 487 PHE VAL GLU ASN THR LYS LYS LEU LEU ARG PHE ASP PHE SEQRES 16 B 487 LEU ASP PRO PHE PHE LEU SER ILE THR VAL PHE PRO PHE SEQRES 17 B 487 LEU ILE PRO ILE LEU GLU VAL LEU ASN ILE CYS VAL PHE SEQRES 18 B 487 PRO ARG GLU VAL THR ASN PHE LEU ARG LYS SER VAL LYS SEQRES 19 B 487 ARG MET LYS GLU SER ARG LEU GLU ASP THR GLN LYS HIS SEQRES 20 B 487 ARG VAL ASP PHE LEU GLN LEU MET ILE ASP SER GLN ASN SEQRES 21 B 487 SER LYS GLU THR GLU SER HIS LYS ALA LEU SER ASP LEU SEQRES 22 B 487 GLU LEU VAL ALA GLN SER ILE ILE PHE ILE PHE ALA GLY SEQRES 23 B 487 TYR GLU THR THR SER SER VAL LEU SER PHE ILE MET TYR SEQRES 24 B 487 GLU LEU ALA THR HIS PRO ASP VAL GLN GLN LYS LEU GLN SEQRES 25 B 487 GLU GLU ILE ASP ALA VAL LEU PRO ASN LYS ALA PRO PRO SEQRES 26 B 487 THR TYR ASP THR VAL LEU GLN MET GLU TYR LEU ASP MET SEQRES 27 B 487 VAL VAL ASN GLU THR LEU ARG LEU PHE PRO ILE ALA MET SEQRES 28 B 487 ARG LEU GLU ARG VAL CYS LYS LYS ASP VAL GLU ILE ASN SEQRES 29 B 487 GLY MET PHE ILE PRO LYS GLY VAL VAL VAL MET ILE PRO SEQRES 30 B 487 SER TYR ALA LEU HIS ARG ASP PRO LYS TYR TRP THR GLU SEQRES 31 B 487 PRO GLU LYS PHE LEU PRO GLU ARG PHE SER LYS LYS ASN SEQRES 32 B 487 LYS ASP ASN ILE ASP PRO TYR ILE TYR THR PRO PHE GLY SEQRES 33 B 487 SER GLY PRO ARG ASN CYS ILE GLY MET ARG PHE ALA LEU SEQRES 34 B 487 MET ASN MET LYS LEU ALA LEU ILE ARG VAL LEU GLN ASN SEQRES 35 B 487 PHE SER PHE LYS PRO CYS LYS GLU THR GLN ILE PRO LEU SEQRES 36 B 487 LYS LEU SER LEU GLY GLY LEU LEU GLN PRO GLU LYS PRO SEQRES 37 B 487 VAL VAL LEU LYS VAL GLU SER ARG ASP GLY THR VAL SER SEQRES 38 B 487 GLY ALA HIS HIS HIS HIS HET HEM A 601 43 HET QDY A 602 41 HET HEM B 601 43 HET QDY B 602 41 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM QDY TERT-BUTYL [(2R)-1-(NAPHTHALEN-1-YL)-3-{[(2S)-1-OXO-3- HETNAM 2 QDY PHENYL-1-{[2-(PYRIDIN-3-YL)ETHYL]AMINO}PROPAN-2- HETNAM 3 QDY YL]SULFANYL}PROPAN-2-YL]CARBAMATE HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 QDY 2(C34 H39 N3 O3 S) HELIX 1 AA1 GLY A 31 LEU A 36 1 6 HELIX 2 AA2 ASN A 49 HIS A 54 5 6 HELIX 3 AA3 LYS A 55 TYR A 68 1 14 HELIX 4 AA4 ASP A 86 VAL A 95 1 10 HELIX 5 AA5 VAL A 111 ALA A 117 5 7 HELIX 6 AA6 GLU A 122 SER A 134 1 13 HELIX 7 AA7 PRO A 135 PHE A 137 5 3 HELIX 8 AA8 THR A 138 MET A 145 1 8 HELIX 9 AA9 MET A 145 THR A 166 1 22 HELIX 10 AB1 LEU A 172 PHE A 189 1 18 HELIX 11 AB2 PHE A 219 PHE A 226 1 8 HELIX 12 AB3 LEU A 229 LEU A 236 1 8 HELIX 13 AB4 PRO A 242 MET A 256 1 15 HELIX 14 AB5 ASP A 270 SER A 278 1 9 HELIX 15 AB6 SER A 291 THR A 323 1 33 HELIX 16 AB7 HIS A 324 LEU A 339 1 16 HELIX 17 AB8 PRO A 340 ALA A 343 5 4 HELIX 18 AB9 THR A 346 MET A 353 1 8 HELIX 19 AC1 MET A 353 PHE A 367 1 15 HELIX 20 AC2 PRO A 397 HIS A 402 1 6 HELIX 21 AC3 LEU A 415 SER A 420 5 6 HELIX 22 AC4 ASN A 423 ILE A 427 5 5 HELIX 23 AC5 GLY A 444 GLN A 461 1 18 HELIX 24 AC6 GLY B 31 LEU B 36 1 6 HELIX 25 AC7 ASN B 49 HIS B 54 5 6 HELIX 26 AC8 LYS B 55 TYR B 68 1 14 HELIX 27 AC9 ASP B 86 VAL B 95 1 10 HELIX 28 AD1 VAL B 111 ALA B 117 5 7 HELIX 29 AD2 GLU B 122 SER B 134 1 13 HELIX 30 AD3 PRO B 135 PHE B 137 5 3 HELIX 31 AD4 THR B 138 MET B 145 1 8 HELIX 32 AD5 MET B 145 THR B 166 1 22 HELIX 33 AD6 LEU B 172 SER B 188 1 17 HELIX 34 AD7 PHE B 219 PHE B 226 1 8 HELIX 35 AD8 LEU B 229 VAL B 235 1 7 HELIX 36 AD9 PRO B 242 VAL B 253 1 12 HELIX 37 AE1 ASP B 270 ASP B 277 1 8 HELIX 38 AE2 SER B 291 THR B 323 1 33 HELIX 39 AE3 HIS B 324 LEU B 339 1 16 HELIX 40 AE4 THR B 346 MET B 353 1 8 HELIX 41 AE5 GLU B 354 PHE B 367 1 14 HELIX 42 AE6 PRO B 397 HIS B 402 1 6 HELIX 43 AE7 LEU B 415 SER B 420 5 6 HELIX 44 AE8 ASN B 423 ILE B 427 5 5 HELIX 45 AE9 GLY B 444 GLN B 461 1 18 SHEET 1 AA1 4 VAL A 71 ASP A 76 0 SHEET 2 AA1 4 GLN A 79 ILE A 84 -1 O ALA A 83 N TRP A 72 SHEET 3 AA1 4 VAL A 393 ILE A 396 1 O MET A 395 N LEU A 82 SHEET 4 AA1 4 LEU A 373 VAL A 376 -1 N LEU A 373 O ILE A 396 SHEET 1 AA2 3 VAL A 170 THR A 171 0 SHEET 2 AA2 3 VAL A 490 SER A 495 -1 O LEU A 491 N VAL A 170 SHEET 3 AA2 3 PHE A 463 LYS A 466 -1 N LYS A 466 O LYS A 492 SHEET 1 AA3 2 VAL A 381 ILE A 383 0 SHEET 2 AA3 2 MET A 386 ILE A 388 -1 O ILE A 388 N VAL A 381 SHEET 1 AA4 4 VAL B 71 ASP B 76 0 SHEET 2 AA4 4 GLN B 79 ILE B 84 -1 O VAL B 81 N PHE B 74 SHEET 3 AA4 4 VAL B 393 ILE B 396 1 O MET B 395 N LEU B 82 SHEET 4 AA4 4 LEU B 373 VAL B 376 -1 N LEU B 373 O ILE B 396 SHEET 1 AA5 3 VAL B 170 THR B 171 0 SHEET 2 AA5 3 VAL B 490 SER B 495 -1 O LEU B 491 N VAL B 170 SHEET 3 AA5 3 PHE B 463 LYS B 466 -1 N LYS B 466 O LYS B 492 SHEET 1 AA6 2 VAL B 381 ILE B 383 0 SHEET 2 AA6 2 MET B 386 ILE B 388 -1 O ILE B 388 N VAL B 381 CISPEP 1 GLY A 109 PRO A 110 0 -0.05 CISPEP 2 PRO A 218 PHE A 219 0 7.53 CISPEP 3 ILE A 473 PRO A 474 0 -1.19 CISPEP 4 GLY B 109 PRO B 110 0 -1.16 CISPEP 5 PRO B 218 PHE B 219 0 8.46 CISPEP 6 ILE B 473 PRO B 474 0 -0.09 SITE 1 AC1 21 ARG A 105 ILE A 118 SER A 119 TRP A 126 SITE 2 AC1 21 ARG A 130 PHE A 302 ALA A 305 THR A 309 SITE 3 AC1 21 VAL A 313 ILE A 369 ARG A 375 PRO A 434 SITE 4 AC1 21 PHE A 435 GLY A 436 SER A 437 ARG A 440 SITE 5 AC1 21 ASN A 441 CYS A 442 ILE A 443 MET A 452 SITE 6 AC1 21 QDY A 602 SITE 1 AC2 14 PHE A 108 MET A 114 SER A 119 ILE A 120 SITE 2 AC2 14 PHE A 213 PHE A 215 ILE A 301 PHE A 304 SITE 3 AC2 14 ALA A 305 THR A 309 ILE A 369 ALA A 370 SITE 4 AC2 14 ARG A 372 HEM A 601 SITE 1 AC3 20 ARG B 105 ILE B 118 SER B 119 TRP B 126 SITE 2 AC3 20 ARG B 130 PHE B 302 ALA B 305 THR B 309 SITE 3 AC3 20 ILE B 369 LEU B 373 ARG B 375 PRO B 434 SITE 4 AC3 20 PHE B 435 GLY B 436 SER B 437 ARG B 440 SITE 5 AC3 20 CYS B 442 ILE B 443 MET B 452 QDY B 602 SITE 1 AC4 13 PHE B 108 MET B 114 SER B 119 ILE B 120 SITE 2 AC4 13 PHE B 213 ILE B 301 PHE B 304 ALA B 305 SITE 3 AC4 13 THR B 309 ILE B 369 ALA B 370 ARG B 372 SITE 4 AC4 13 HEM B 601 CRYST1 152.989 98.080 93.429 90.00 124.04 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006536 0.000000 0.004416 0.00000 SCALE2 0.000000 0.010196 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012917 0.00000