HEADER RNA 16-OCT-19 6UP0 TITLE STRUCTURE OF THE MANGO-III FLUORESCENT APTAMER BOUND TO YO3-BIOTIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANGO-III FLUORESCENT APTAMER; COMPND 3 CHAIN: C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS RNA, FLUORESCENT, APTAMER EXPDTA X-RAY DIFFRACTION AUTHOR R.J.TRACHMAN,A.R.FERRE-D'AMARE REVDAT 3 11-OCT-23 6UP0 1 REMARK REVDAT 2 26-MAY-21 6UP0 1 JRNL REVDAT 1 21-OCT-20 6UP0 0 JRNL AUTH S.C.Y.JENG,R.J.TRACHMAN III,F.WEISSENBOECK,L.TRUONG, JRNL AUTH 2 K.A.LINK,M.D.E.JEPSEN,J.R.KNUTSON,E.S.ANDERSEN, JRNL AUTH 3 A.R.FERRE-D'AMARE,P.J.UNRAU JRNL TITL FLUOROGENIC APTAMERS RESOLVE THE FLEXIBILITY OF RNA JRNL TITL 2 JUNCTIONS USING ORIENTATION-DEPENDENT FRET. JRNL REF RNA V. 27 433 2021 JRNL REFN ESSN 1469-9001 JRNL PMID 33376189 JRNL DOI 10.1261/RNA.078220.120 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.V.AFONINE,R.W.GROSSE-KUNSTLEVE,N.ECHOLS,J.J.HEADD, REMARK 1 AUTH 2 N.W.MORIARTY,M.MUSTYAKIMOV,T.C.TERWILLIGER,A.URZHUMTSEV, REMARK 1 AUTH 3 P.H.ZWART,P.D.ADAMS REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 68 352 2012 REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 22505256 REMARK 1 DOI 10.1107/S0907444912001308 REMARK 1 REFERENCE 2 REMARK 1 AUTH P.D.ADAMS,P.V.AFONINE,G.BUNKOCZI,V.B.CHEN,I.W.DAVIS, REMARK 1 AUTH 2 N.ECHOLS,J.J.HEADD,L.W.HUNG,G.J.KAPRAL,R.W.GROSSE-KUNSTLEVE, REMARK 1 AUTH 3 A.J.MCCOY,N.W.MORIARTY,R.OEFFNER,R.J.READ,D.C.RICHARDSON, REMARK 1 AUTH 4 J.S.RICHARDSON,T.C.TERWILLIGER,P.H.ZWART REMARK 1 TITL PHENIX: A COMPREHENSIVE PYTHON-BASED SYSTEM FOR REMARK 1 TITL 2 MACROMOLECULAR STRUCTURE SOLUTION. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 66 213 2010 REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 20124702 REMARK 1 DOI 10.1107/S0907444909052925 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3211 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 15179 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1498 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.4100 - 6.2200 0.99 1242 132 0.1675 0.1914 REMARK 3 2 6.2200 - 4.9400 1.00 1256 135 0.1324 0.1792 REMARK 3 3 4.9400 - 4.3200 1.00 1245 139 0.1325 0.1655 REMARK 3 4 4.3200 - 3.9200 1.00 1230 141 0.1389 0.2006 REMARK 3 5 3.9200 - 3.6400 1.00 1246 135 0.1864 0.2486 REMARK 3 6 3.6400 - 3.4300 0.99 1244 132 0.1897 0.1932 REMARK 3 7 3.4300 - 3.2600 1.00 1235 140 0.1836 0.2526 REMARK 3 8 3.2600 - 3.1100 1.00 1267 139 0.2184 0.2646 REMARK 3 9 3.1100 - 2.9900 1.00 1207 137 0.2744 0.3489 REMARK 3 10 2.9900 - 2.8900 0.99 1283 126 0.3571 0.4494 REMARK 3 11 2.8900 - 2.8000 0.99 1226 142 0.4431 0.4443 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.530 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 89.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1882 REMARK 3 ANGLE : 1.198 2926 REMARK 3 CHIRALITY : 0.051 378 REMARK 3 PLANARITY : 0.007 82 REMARK 3 DIHEDRAL : 14.279 910 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN 'C' REMARK 3 SELECTION : CHAIN 'D' REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UP0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1000244981. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5-7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : CRYO-COOLED DOUBLE CRYSTAL REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16604 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.720 REMARK 200 RESOLUTION RANGE LOW (A) : 50.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 1.00000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 6E8S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40 MM SODIUM CACODYLATE, 0.08 M SODIUM REMARK 280 CHLORIDE, 0.012 M POTASSIUM CHLORIDE, 0.02 M MAGNESIUM CHLORIDE, REMARK 280 0.012 M SPERMINE, 5.5% SUCROSE, 31% MPD, PH 7.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.14200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.31400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.46050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.31400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.14200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.46050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G C 25 O5' - P - OP2 ANGL. DEV. = -6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C 105 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G C 9 O6 REMARK 620 2 G C 10 O6 70.5 REMARK 620 3 G C 13 O6 68.0 86.2 REMARK 620 4 G C 14 O6 132.0 79.3 73.6 REMARK 620 5 G C 18 O6 111.8 162.9 79.4 87.7 REMARK 620 6 G C 19 O6 152.6 117.8 135.4 74.9 68.4 REMARK 620 7 G C 23 O6 89.9 73.8 154.4 116.7 122.5 69.6 REMARK 620 8 G C 25 O6 77.5 123.1 123.2 150.0 73.2 76.6 60.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U C 16 OP2 REMARK 620 2 A D 21 OP1 121.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U C 16 OP2 REMARK 620 2 A D 21 OP1 154.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A C 21 OP1 REMARK 620 2 U D 16 OP2 45.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A C 21 OP1 REMARK 620 2 U D 16 OP2 68.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K D 105 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G D 9 O6 REMARK 620 2 G D 10 O6 73.2 REMARK 620 3 G D 13 O6 76.8 85.4 REMARK 620 4 G D 14 O6 135.3 71.0 74.6 REMARK 620 5 G D 18 O6 117.6 156.9 77.9 89.0 REMARK 620 6 G D 19 O6 148.4 115.1 132.4 73.1 67.6 REMARK 620 7 G D 23 O6 79.5 76.7 153.6 116.3 124.0 73.5 REMARK 620 8 G D 25 O6 73.2 131.0 119.7 151.5 71.9 80.0 62.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YO3 C 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K C 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG D 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG D 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YO3 D 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K D 105 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6E8S RELATED DB: PDB DBREF 6UP0 C 1 38 PDB 6UP0 6UP0 1 38 DBREF 6UP0 D 1 38 PDB 6UP0 6UP0 1 38 SEQRES 1 C 38 G C U A C G A A G G A A G SEQRES 2 C 38 G A U U G G U A U G U G G SEQRES 3 C 38 U A U A U U C G U A G C SEQRES 1 D 38 G C U A C G A A G G A A G SEQRES 2 D 38 G A U U G G U A U G U G G SEQRES 3 D 38 U A U A U U C G U A G C HET MG C 101 1 HET MG C 102 1 HET MG C 103 1 HET YO3 C 104 24 HET K C 105 1 HET MG D 101 1 HET MG D 102 1 HET MG D 103 1 HET YO3 D 104 24 HET K D 105 1 HETNAM MG MAGNESIUM ION HETNAM YO3 YO3-BIOTIN HETNAM K POTASSIUM ION HETSYN YO3 3-METHYL-2-[(1E,3E)-3-(1-METHYLQUINOLIN-4(1H)-YLIDENE) HETSYN 2 YO3 PROP-1-EN-1-YL]-1,3-BENZOXAZOL-3-IUM FORMUL 3 MG 6(MG 2+) FORMUL 6 YO3 2(C21 H19 N2 O 1+) FORMUL 7 K 2(K 1+) LINK O6 G C 9 K K C 105 1555 1555 2.74 LINK O6 G C 10 K K C 105 1555 1555 2.68 LINK OP1 A C 12 MG MG C 101 1555 1555 2.74 LINK O6 G C 13 K K C 105 1555 1555 2.57 LINK O6 G C 14 K K C 105 1555 1555 2.72 LINK OP2 U C 16 MG MG C 103 1555 1555 2.11 LINK OP2 U C 16 MG MG D 102 1555 2455 2.59 LINK O6 G C 18 K K C 105 1555 1555 2.67 LINK O6 G C 19 K K C 105 1555 1555 2.62 LINK OP1 A C 21 MG MG C 102 1555 1555 2.36 LINK OP1 A C 21 MG MG D 103 1555 2455 2.27 LINK O6 G C 23 K K C 105 1555 1555 2.60 LINK O6 G C 25 K K C 105 1555 1555 2.78 LINK MG MG C 102 OP2 U D 16 2454 1555 2.44 LINK MG MG C 103 OP1 A D 21 2454 1555 2.66 LINK O6 G D 9 K K D 105 1555 1555 2.68 LINK O6 G D 10 K K D 105 1555 1555 2.70 LINK OP1 A D 12 MG MG D 101 1555 1555 2.99 LINK O6 G D 13 K K D 105 1555 1555 2.72 LINK O6 G D 14 K K D 105 1555 1555 2.80 LINK OP2 U D 16 MG MG D 103 1555 1555 2.48 LINK O6 G D 18 K K D 105 1555 1555 2.59 LINK O6 G D 19 K K D 105 1555 1555 2.69 LINK OP1 A D 21 MG MG D 102 1555 1555 2.28 LINK O6 G D 23 K K D 105 1555 1555 2.66 LINK O6 G D 25 K K D 105 1555 1555 2.83 SITE 1 AC1 3 G C 9 A C 12 U C 24 SITE 1 AC2 3 A C 21 U D 16 MG D 103 SITE 1 AC3 3 U C 16 A D 21 MG D 102 SITE 1 AC4 8 G C 10 G C 14 A C 15 U C 17 SITE 2 AC4 8 G C 19 A C 21 U C 22 G C 23 SITE 1 AC5 8 G C 9 G C 10 G C 13 G C 14 SITE 2 AC5 8 G C 18 G C 19 G C 23 G C 25 SITE 1 AC6 3 A D 8 A D 12 U D 24 SITE 1 AC7 4 A C 15 U C 16 MG C 103 A D 21 SITE 1 AC8 4 A C 21 MG C 102 A D 15 U D 16 SITE 1 AC9 8 G D 10 G D 14 A D 15 U D 17 SITE 2 AC9 8 G D 19 A D 21 U D 22 G D 23 SITE 1 AD1 8 G D 9 G D 10 G D 13 G D 14 SITE 2 AD1 8 G D 18 G D 19 G D 23 G D 25 CRYST1 62.284 66.921 76.628 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016055 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014943 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013050 0.00000