HEADER RNA BINDING PROTEIN 16-OCT-19 6UP4 TITLE CRYSTAL STRUCTURE OF THE MURINE DHX36 HELICASE IN COMPLEX WITH ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DHX36 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: DHX36; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSMT3 KEYWDS HELICASE, ATP-DEPENDENT, RNA-BINDING, DNA-BINDING, G4 RESOLVASE, RNA KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.LIU,T.S.XIAO REVDAT 3 13-MAR-24 6UP4 1 LINK REVDAT 2 27-MAY-20 6UP4 1 JRNL REVDAT 1 15-APR-20 6UP4 0 JRNL AUTH S.SRINIVASAN,Z.LIU,W.CHUENCHOR,T.S.XIAO,E.JANKOWSKY JRNL TITL FUNCTION OF AUXILIARY DOMAINS OF THE DEAH/RHA HELICASE DHX36 JRNL TITL 2 IN RNA REMODELING. JRNL REF J.MOL.BIOL. V. 432 2217 2020 JRNL REFN ESSN 1089-8638 JRNL PMID 32087197 JRNL DOI 10.1016/J.JMB.2020.02.005 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3374 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 40658 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 2084 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.8000 - 5.9152 1.00 2756 144 0.1460 0.1583 REMARK 3 2 5.9152 - 4.6965 1.00 2622 148 0.1524 0.1974 REMARK 3 3 4.6965 - 4.1032 1.00 2599 141 0.1414 0.1910 REMARK 3 4 4.1032 - 3.7282 1.00 2586 143 0.1642 0.2285 REMARK 3 5 3.7282 - 3.4611 1.00 2560 151 0.1789 0.2389 REMARK 3 6 3.4611 - 3.2571 1.00 2525 163 0.2056 0.2775 REMARK 3 7 3.2571 - 3.0940 1.00 2570 132 0.2129 0.2499 REMARK 3 8 3.0940 - 2.9593 1.00 2561 140 0.2289 0.3366 REMARK 3 9 2.9593 - 2.8454 1.00 2530 129 0.2407 0.2951 REMARK 3 10 2.8454 - 2.7472 1.00 2541 137 0.2348 0.2975 REMARK 3 11 2.7472 - 2.6614 1.00 2559 125 0.2341 0.3096 REMARK 3 12 2.6614 - 2.5853 1.00 2539 132 0.2380 0.3115 REMARK 3 13 2.5853 - 2.5172 1.00 2528 142 0.2780 0.3050 REMARK 3 14 2.5172 - 2.4558 1.00 2529 128 0.2947 0.3518 REMARK 3 15 2.4558 - 2.4000 1.00 2569 129 0.3222 0.4180 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 153 THROUGH 390 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6441 31.1467 11.9379 REMARK 3 T TENSOR REMARK 3 T11: 0.6052 T22: 0.4232 REMARK 3 T33: 0.3067 T12: -0.0164 REMARK 3 T13: 0.0338 T23: -0.0311 REMARK 3 L TENSOR REMARK 3 L11: 1.4110 L22: 1.2757 REMARK 3 L33: 0.9162 L12: 0.8549 REMARK 3 L13: -0.5968 L23: -0.6400 REMARK 3 S TENSOR REMARK 3 S11: -0.2969 S12: 0.2064 S13: -0.1029 REMARK 3 S21: -0.6569 S22: 0.1948 S23: -0.1028 REMARK 3 S31: 0.1958 S32: 0.1525 S33: 0.0545 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 391 THROUGH 614 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2806 9.8034 34.6876 REMARK 3 T TENSOR REMARK 3 T11: 0.2003 T22: 0.2367 REMARK 3 T33: 0.3172 T12: 0.0160 REMARK 3 T13: 0.0020 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 1.6024 L22: 3.2912 REMARK 3 L33: 1.6208 L12: 0.8565 REMARK 3 L13: -0.0697 L23: -0.1049 REMARK 3 S TENSOR REMARK 3 S11: -0.0476 S12: -0.1161 S13: 0.0040 REMARK 3 S21: -0.0659 S22: -0.0115 S23: -0.4666 REMARK 3 S31: 0.0380 S32: 0.2004 S33: 0.0481 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 615 THROUGH 982 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7099 27.3030 50.0368 REMARK 3 T TENSOR REMARK 3 T11: 0.2477 T22: 0.2976 REMARK 3 T33: 0.3331 T12: 0.0368 REMARK 3 T13: 0.0268 T23: -0.0443 REMARK 3 L TENSOR REMARK 3 L11: 2.1784 L22: 1.1130 REMARK 3 L33: 1.4422 L12: -0.1810 REMARK 3 L13: 0.4219 L23: -0.3059 REMARK 3 S TENSOR REMARK 3 S11: 0.0042 S12: 0.0058 S13: -0.3888 REMARK 3 S21: -0.0080 S22: -0.0295 S23: -0.0022 REMARK 3 S31: 0.1905 S32: 0.2785 S33: 0.0396 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UP4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1000244982. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77042 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 46.826 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 5000 MME, 0.1 M HEPES PH 7.0, REMARK 280 5% V/V TACSIMATE, EVAPORATION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.08000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.28500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.96500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.28500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.08000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.96500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 405 REMARK 465 HIS A 406 REMARK 465 ARG A 407 REMARK 465 SER A 408 REMARK 465 HIS A 517 REMARK 465 SER A 518 REMARK 465 LEU A 519 REMARK 465 MET A 520 REMARK 465 PRO A 521 REMARK 465 THR A 522 REMARK 465 VAL A 523 REMARK 465 ASN A 524 REMARK 465 GLY A 843 REMARK 465 LYS A 844 REMARK 465 LYS A 845 REMARK 465 ARG A 846 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 883 O HOH A 1101 2.14 REMARK 500 NZ LYS A 427 OD1 ASP A 616 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 412 OD1 ASP A 916 4456 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 915 CA - CB - CG ANGL. DEV. = 17.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 168 79.71 -69.17 REMARK 500 LEU A 317 49.22 38.23 REMARK 500 PHE A 370 32.16 -98.02 REMARK 500 ARG A 412 -167.23 -101.94 REMARK 500 ASN A 574 62.76 39.61 REMARK 500 PRO A 689 46.26 -76.74 REMARK 500 LYS A 720 159.93 176.89 REMARK 500 ASP A 914 -157.55 -149.94 REMARK 500 GLU A 924 -18.15 70.56 REMARK 500 SER A 955 72.00 47.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 916 GLN A 917 -137.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 229 OG1 REMARK 620 2 GLU A 327 OE2 91.0 REMARK 620 3 ADP A1001 O3B 73.2 164.2 REMARK 620 4 HOH A1106 O 157.0 111.7 84.1 REMARK 620 5 HOH A1133 O 86.0 90.6 87.6 90.0 REMARK 620 6 HOH A1167 O 87.3 104.0 76.5 90.6 164.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1002 DBREF 6UP4 A 152 981 UNP B2RQS6 B2RQS6_MOUSE 152 981 SEQRES 1 A 830 LYS SER TYR ILE ASP ARG ASP THR GLU TYR LEU LEU GLN SEQRES 2 A 830 GLU ASN GLU PRO ASN LEU SER LEU ASP GLN HIS LEU LEU SEQRES 3 A 830 GLU ASP LEU GLN ARG LYS LYS THR ASP PRO ARG TYR ILE SEQRES 4 A 830 GLU MET GLN ARG PHE ARG LYS LYS LEU PRO SER TYR GLY SEQRES 5 A 830 MET GLN LYS GLU LEU VAL ASN LEU ILE ASN ASN HIS GLN SEQRES 6 A 830 VAL THR VAL ILE SER GLY GLU THR GLY CYS GLY LYS THR SEQRES 7 A 830 THR GLN VAL THR GLN PHE ILE LEU ASP ASN TYR ILE GLU SEQRES 8 A 830 ARG GLY LYS GLY SER ALA CYS ARG ILE VAL CYS THR GLN SEQRES 9 A 830 PRO ARG ARG ILE SER ALA ILE SER VAL ALA GLU ARG VAL SEQRES 10 A 830 ALA THR GLU ARG ALA GLU SER CYS GLY ASN GLY ASN SER SEQRES 11 A 830 THR GLY TYR GLN ILE ARG LEU GLN SER ARG LEU PRO ARG SEQRES 12 A 830 LYS GLN GLY SER ILE LEU TYR CYS THR THR GLY ILE ILE SEQRES 13 A 830 LEU GLN TRP LEU GLN SER ASP SER ARG LEU SER SER VAL SEQRES 14 A 830 SER HIS ILE VAL LEU ASP GLU ILE HIS GLU ARG ASN LEU SEQRES 15 A 830 GLN SER ASP VAL LEU MET THR VAL ILE LYS ASP LEU LEU SEQRES 16 A 830 HIS PHE ARG SER ASP LEU LYS VAL ILE LEU MET SER ALA SEQRES 17 A 830 THR LEU ASN ALA GLU LYS PHE SER GLU TYR PHE GLY ASN SEQRES 18 A 830 CYS PRO MET ILE HIS ILE PRO GLY PHE THR PHE PRO VAL SEQRES 19 A 830 VAL GLU TYR LEU LEU GLU ASP ILE ILE GLU LYS ILE ARG SEQRES 20 A 830 TYR VAL PRO ASP GLN LYS GLU HIS ARG SER GLN PHE LYS SEQRES 21 A 830 ARG GLY PHE MET GLN GLY HIS VAL ASN ARG GLN GLU LYS SEQRES 22 A 830 GLU GLU LYS GLU ALA ILE TYR LYS GLU ARG TRP PRO ALA SEQRES 23 A 830 TYR ILE LYS GLU LEU ARG THR ARG TYR SER ALA SER THR SEQRES 24 A 830 VAL ASP VAL LEU GLN MET MET ASP ASP ASP LYS VAL ASP SEQRES 25 A 830 LEU ASN LEU ILE ALA ALA LEU ILE ARG TYR ILE VAL LEU SEQRES 26 A 830 GLU GLU GLU ASP GLY ALA ILE LEU VAL PHE LEU PRO GLY SEQRES 27 A 830 TRP ASP ASN ILE SER THR LEU HIS ASP LEU LEU MET SER SEQRES 28 A 830 GLN VAL MET PHE LYS SER ASP LYS PHE LEU ILE ILE PRO SEQRES 29 A 830 LEU HIS SER LEU MET PRO THR VAL ASN GLN THR GLN VAL SEQRES 30 A 830 PHE LYS LYS THR PRO PRO GLY VAL ARG LYS ILE VAL ILE SEQRES 31 A 830 ALA THR ASN ILE ALA GLU THR SER ILE THR ILE ASP ASP SEQRES 32 A 830 VAL VAL TYR VAL ILE ASP GLY GLY LYS ILE LYS GLU THR SEQRES 33 A 830 HIS PHE ASP THR GLN ASN ASN ILE SER THR MET SER ALA SEQRES 34 A 830 GLU TRP VAL SER LYS ALA ASN ALA LYS GLN ARG LYS GLY SEQRES 35 A 830 ARG ALA GLY ARG VAL GLN PRO GLY HIS CYS TYR HIS LEU SEQRES 36 A 830 TYR ASN GLY LEU ARG ALA SER LEU LEU ASP ASP TYR GLN SEQRES 37 A 830 LEU PRO GLU ILE LEU ARG THR PRO LEU GLU GLU LEU CYS SEQRES 38 A 830 LEU GLN ILE LYS ILE LEU ARG LEU GLY GLY ILE ALA TYR SEQRES 39 A 830 PHE LEU SER ARG LEU MET ASP PRO PRO SER ASN GLU ALA SEQRES 40 A 830 VAL VAL LEU SER ILE LYS HIS LEU MET GLU LEU SER ALA SEQRES 41 A 830 LEU ASP LYS GLN GLU GLU LEU THR PRO LEU GLY VAL HIS SEQRES 42 A 830 LEU ALA ARG LEU PRO VAL GLU PRO HIS ILE GLY LYS MET SEQRES 43 A 830 ILE LEU PHE GLY ALA LEU PHE CYS CYS LEU ASP PRO VAL SEQRES 44 A 830 LEU THR ILE ALA ALA SER LEU SER PHE LYS ASP PRO PHE SEQRES 45 A 830 VAL ILE PRO LEU GLY LYS GLU LYS ILE ALA ASP ALA ARG SEQRES 46 A 830 ARG LYS GLU LEU ALA LYS GLU THR ARG SER ASP HIS LEU SEQRES 47 A 830 THR VAL VAL ASN ALA PHE GLU GLY TRP GLU GLU ALA LYS SEQRES 48 A 830 ARG ARG GLY PHE ARG TYR GLU LYS ASP TYR CYS TRP GLU SEQRES 49 A 830 TYR PHE LEU SER SER ASN THR LEU GLN MET LEU HIS ASN SEQRES 50 A 830 MET LYS GLY GLN PHE ALA GLU HIS LEU LEU GLY ALA GLY SEQRES 51 A 830 PHE VAL SER SER ARG SER PRO LYS ASP PRO LYS ALA ASN SEQRES 52 A 830 ILE ASN SER ASP ASN GLU LYS ILE ILE LYS ALA VAL ILE SEQRES 53 A 830 CYS ALA GLY LEU TYR PRO LYS VAL ALA LYS ILE ARG LEU SEQRES 54 A 830 ASN LEU GLY LYS LYS ARG LYS MET VAL LYS VAL HIS THR SEQRES 55 A 830 LYS SER ASP GLY LEU VAL SER ILE HIS PRO LYS SER VAL SEQRES 56 A 830 ASN VAL GLU GLN THR ASP PHE HIS TYR ASN TRP LEU ILE SEQRES 57 A 830 TYR HIS LEU LYS MET ARG THR SER SER ILE TYR LEU TYR SEQRES 58 A 830 ASP CYS THR GLU VAL SER PRO TYR CYS LEU LEU PHE PHE SEQRES 59 A 830 GLY GLY ASP ILE SER ILE GLN LYS ASP LYS ASP GLN GLU SEQRES 60 A 830 ILE ILE ALA VAL ASP GLU TRP ILE VAL PHE GLN SER PRO SEQRES 61 A 830 GLU ARG ILE ALA HIS LEU VAL LYS GLY LEU ARG LYS GLU SEQRES 62 A 830 LEU ASP SER LEU LEU GLN GLU LYS ILE GLU SER PRO HIS SEQRES 63 A 830 PRO VAL ASP TRP ASP ASP THR LYS SER ARG ASP CYS ALA SEQRES 64 A 830 VAL LEU SER ALA ILE LEU ASP LEU ILE LYS THR HET ADP A1001 27 HET MG A1002 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 MG MG 2+ FORMUL 4 HOH *145(H2 O) HELIX 1 AA1 SER A 153 ARG A 157 5 5 HELIX 2 AA2 THR A 159 GLN A 164 1 6 HELIX 3 AA3 ASN A 169 LYS A 184 1 16 HELIX 4 AA4 ASP A 186 LYS A 198 1 13 HELIX 5 AA5 LEU A 199 MET A 204 1 6 HELIX 6 AA6 MET A 204 HIS A 215 1 12 HELIX 7 AA7 GLY A 227 ARG A 243 1 17 HELIX 8 AA8 LYS A 245 ALA A 248 5 4 HELIX 9 AA9 ARG A 257 ARG A 272 1 16 HELIX 10 AB1 THR A 304 ASP A 314 1 11 HELIX 11 AB2 GLU A 327 ARG A 331 5 5 HELIX 12 AB3 ASN A 332 LEU A 346 1 15 HELIX 13 AB4 ASN A 362 PHE A 370 1 9 HELIX 14 AB5 LEU A 389 ARG A 398 1 10 HELIX 15 AB6 ARG A 412 GLY A 417 5 6 HELIX 16 AB7 ARG A 421 THR A 444 1 24 HELIX 17 AB8 SER A 447 GLN A 455 1 9 HELIX 18 AB9 ASP A 463 GLU A 478 1 16 HELIX 19 AC1 PRO A 488 SER A 502 1 15 HELIX 20 AC2 GLN A 503 SER A 508 5 6 HELIX 21 AC3 ILE A 545 THR A 548 5 4 HELIX 22 AC4 SER A 584 ARG A 594 1 11 HELIX 23 AC5 ASN A 608 LEU A 614 1 7 HELIX 24 AC6 PRO A 621 ARG A 625 5 5 HELIX 25 AC7 LEU A 628 LEU A 638 1 11 HELIX 26 AC8 GLY A 642 SER A 648 1 7 HELIX 27 AC9 SER A 655 LEU A 669 1 15 HELIX 28 AD1 THR A 679 ARG A 687 1 9 HELIX 29 AD2 GLU A 691 PHE A 704 1 14 HELIX 30 AD3 CYS A 706 PHE A 719 1 14 HELIX 31 AD4 LYS A 729 LYS A 742 1 14 HELIX 32 AD5 SER A 746 ARG A 764 1 19 HELIX 33 AD6 GLY A 765 TYR A 776 1 12 HELIX 34 AD7 SER A 779 ALA A 800 1 22 HELIX 35 AD8 ASP A 810 ASN A 814 5 5 HELIX 36 AD9 ASN A 819 TYR A 832 1 14 HELIX 37 AE1 SER A 898 GLY A 906 1 9 HELIX 38 AE2 PRO A 931 LYS A 952 1 22 HELIX 39 AE3 SER A 966 LYS A 980 1 15 SHEET 1 AA1 8 GLN A 289 ARG A 291 0 SHEET 2 AA1 8 THR A 282 ILE A 286 -1 N ILE A 286 O GLN A 289 SHEET 3 AA1 8 SER A 298 THR A 303 1 O TYR A 301 N GLY A 283 SHEET 4 AA1 8 ARG A 250 GLN A 255 1 N CYS A 253 O LEU A 300 SHEET 5 AA1 8 HIS A 322 LEU A 325 1 O VAL A 324 N VAL A 252 SHEET 6 AA1 8 LYS A 353 SER A 358 1 O MET A 357 N LEU A 325 SHEET 7 AA1 8 VAL A 217 GLY A 222 1 N ILE A 220 O LEU A 356 SHEET 8 AA1 8 MET A 375 ILE A 378 1 O ILE A 376 N SER A 221 SHEET 1 AA2 6 VAL A 385 TYR A 388 0 SHEET 2 AA2 6 GLY A 601 HIS A 605 1 O HIS A 605 N TYR A 388 SHEET 3 AA2 6 VAL A 555 ASP A 560 1 N VAL A 558 O TYR A 604 SHEET 4 AA2 6 ALA A 482 LEU A 487 1 N LEU A 484 O ILE A 559 SHEET 5 AA2 6 ARG A 537 THR A 543 1 O ALA A 542 N VAL A 485 SHEET 6 AA2 6 PHE A 511 LEU A 516 1 N LEU A 512 O ILE A 539 SHEET 1 AA3 2 LYS A 563 ASP A 570 0 SHEET 2 AA3 2 ILE A 575 TRP A 582 -1 O GLU A 581 N ILE A 564 SHEET 1 AA4 7 LYS A 883 ARG A 885 0 SHEET 2 AA4 7 ILE A 889 LEU A 891 -1 O TYR A 890 N MET A 884 SHEET 3 AA4 7 LEU A 858 ILE A 861 1 N SER A 860 O LEU A 891 SHEET 4 AA4 7 LYS A 850 THR A 853 -1 N VAL A 851 O VAL A 859 SHEET 5 AA4 7 VAL A 835 ILE A 838 -1 N LYS A 837 O HIS A 852 SHEET 6 AA4 7 TRP A 877 TYR A 880 -1 O LEU A 878 N ALA A 836 SHEET 7 AA4 7 CYS A 894 VAL A 897 -1 O THR A 895 N ILE A 879 SHEET 1 AA5 3 ILE A 909 LYS A 913 0 SHEET 2 AA5 3 GLU A 918 VAL A 922 -1 O ALA A 921 N SER A 910 SHEET 3 AA5 3 ILE A 926 GLN A 929 -1 O ILE A 926 N VAL A 922 LINK OG1 THR A 229 MG MG A1002 1555 1555 2.11 LINK OE2 GLU A 327 MG MG A1002 1555 1555 2.05 LINK O3B ADP A1001 MG MG A1002 1555 1555 2.34 LINK MG MG A1002 O HOH A1106 1555 1555 2.11 LINK MG MG A1002 O HOH A1133 1555 1555 2.25 LINK MG MG A1002 O HOH A1167 1555 1555 2.20 CISPEP 1 TYR A 832 PRO A 833 0 7.14 SITE 1 AC1 18 THR A 224 GLY A 225 CYS A 226 GLY A 227 SITE 2 AC1 18 LYS A 228 THR A 229 THR A 230 ARG A 267 SITE 3 AC1 18 PHE A 529 THR A 551 ASP A 553 ARG A 597 SITE 4 AC1 18 MG A1002 HOH A1106 HOH A1128 HOH A1151 SITE 5 AC1 18 HOH A1167 HOH A1217 SITE 1 AC2 6 THR A 229 GLU A 327 ADP A1001 HOH A1106 SITE 2 AC2 6 HOH A1133 HOH A1167 CRYST1 66.160 115.930 132.570 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015115 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008626 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007543 0.00000