HEADER ISOMERASE 17-OCT-19 6UPF TITLE TRIOSEPHOSPHATE ISOMERASE DEFICIENCY: EFFECT OF F240L MUTATION ON TITLE 2 ENZYME STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TIM,METHYLGLYOXAL SYNTHASE,TRIOSE-PHOSPHATE ISOMERASE; COMPND 5 EC: 5.3.1.1,4.2.3.3; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TPI1, TPI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOLYTIC ENZYME, ALPHA BETA BARREL, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.ROMERO REVDAT 4 11-OCT-23 6UPF 1 REMARK REVDAT 3 15-JUL-20 6UPF 1 JRNL REVDAT 2 08-JUL-20 6UPF 1 JRNL REVDAT 1 01-JUL-20 6UPF 0 JRNL AUTH J.M.ROMERO JRNL TITL TRIOSEPHOSPHATE ISOMERASE DEFICIENCY: EFFECT OF F240L JRNL TITL 2 MUTATION ON ENZYME STRUCTURE. JRNL REF ARCH.BIOCHEM.BIOPHYS. V. 689 08473 2020 JRNL REFN ESSN 1096-0384 JRNL PMID 32585311 JRNL DOI 10.1016/J.ABB.2020.108473 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 75.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 62725 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3334 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4571 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 228 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3718 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 702 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : -0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.087 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.089 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.068 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.065 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3858 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3646 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5237 ; 1.953 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8485 ; 1.067 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 506 ; 6.252 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 153 ;40.649 ;25.294 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 657 ;13.923 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;15.113 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 595 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4305 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 723 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6UPF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1000244992. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0-8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.4586 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66128 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 75.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.71400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4POC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M TRIS-HCL PH 7.5, 0.05 M NACL, 1 REMARK 280 MM EDTA, 15% PEG 4000 AND 2 MM 2-PG, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.58000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.96000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.58000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 75.96000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 HIS B -1 REMARK 465 MET B 0 REMARK 465 ALA B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 457 O HOH B 607 2.09 REMARK 500 O HOH A 510 O HOH A 541 2.11 REMARK 500 O HOH B 617 O HOH B 648 2.14 REMARK 500 O HOH B 635 O HOH B 643 2.16 REMARK 500 O HOH A 428 O HOH A 659 2.16 REMARK 500 O HOH A 434 O HOH A 612 2.18 REMARK 500 O HOH B 668 O HOH B 711 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 165 CD GLU A 165 OE2 0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP A 132 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG B 134 NE - CZ - NH1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG B 134 NE - CZ - NH2 ANGL. DEV. = -8.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 13 -142.46 50.23 REMARK 500 VAL A 196 -74.10 -120.09 REMARK 500 ASN A 245 31.39 -95.05 REMARK 500 LYS B 13 -147.53 51.22 REMARK 500 VAL B 196 -71.10 -124.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 737 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A 738 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH A 739 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH B 761 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH B 762 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH B 763 DISTANCE = 6.83 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGA B 301 DBREF 6UPF A 1 248 UNP P60174 TPIS_HUMAN 39 286 DBREF 6UPF B 1 248 UNP P60174 TPIS_HUMAN 39 286 SEQADV 6UPF GLY A -3 UNP P60174 EXPRESSION TAG SEQADV 6UPF SER A -2 UNP P60174 EXPRESSION TAG SEQADV 6UPF HIS A -1 UNP P60174 EXPRESSION TAG SEQADV 6UPF MET A 0 UNP P60174 EXPRESSION TAG SEQADV 6UPF LEU A 240 UNP P60174 PHE 278 ENGINEERED MUTATION SEQADV 6UPF GLY B -3 UNP P60174 EXPRESSION TAG SEQADV 6UPF SER B -2 UNP P60174 EXPRESSION TAG SEQADV 6UPF HIS B -1 UNP P60174 EXPRESSION TAG SEQADV 6UPF MET B 0 UNP P60174 EXPRESSION TAG SEQADV 6UPF LEU B 240 UNP P60174 PHE 278 ENGINEERED MUTATION SEQRES 1 A 252 GLY SER HIS MET ALA PRO SER ARG LYS PHE PHE VAL GLY SEQRES 2 A 252 GLY ASN TRP LYS MET ASN GLY ARG LYS GLN SER LEU GLY SEQRES 3 A 252 GLU LEU ILE GLY THR LEU ASN ALA ALA LYS VAL PRO ALA SEQRES 4 A 252 ASP THR GLU VAL VAL CYS ALA PRO PRO THR ALA TYR ILE SEQRES 5 A 252 ASP PHE ALA ARG GLN LYS LEU ASP PRO LYS ILE ALA VAL SEQRES 6 A 252 ALA ALA GLN ASN CYS TYR LYS VAL THR ASN GLY ALA PHE SEQRES 7 A 252 THR GLY GLU ILE SER PRO GLY MET ILE LYS ASP CYS GLY SEQRES 8 A 252 ALA THR TRP VAL VAL LEU GLY HIS SER GLU ARG ARG HIS SEQRES 9 A 252 VAL PHE GLY GLU SER ASP GLU LEU ILE GLY GLN LYS VAL SEQRES 10 A 252 ALA HIS ALA LEU ALA GLU GLY LEU GLY VAL ILE ALA CYS SEQRES 11 A 252 ILE GLY GLU LYS LEU ASP GLU ARG GLU ALA GLY ILE THR SEQRES 12 A 252 GLU LYS VAL VAL PHE GLU GLN THR LYS VAL ILE ALA ASP SEQRES 13 A 252 ASN VAL LYS ASP TRP SER LYS VAL VAL LEU ALA TYR GLU SEQRES 14 A 252 PRO VAL TRP ALA ILE GLY THR GLY LYS THR ALA THR PRO SEQRES 15 A 252 GLN GLN ALA GLN GLU VAL HIS GLU LYS LEU ARG GLY TRP SEQRES 16 A 252 LEU LYS SER ASN VAL SER ASP ALA VAL ALA GLN SER THR SEQRES 17 A 252 ARG ILE ILE TYR GLY GLY SER VAL THR GLY ALA THR CYS SEQRES 18 A 252 LYS GLU LEU ALA SER GLN PRO ASP VAL ASP GLY PHE LEU SEQRES 19 A 252 VAL GLY GLY ALA SER LEU LYS PRO GLU LEU VAL ASP ILE SEQRES 20 A 252 ILE ASN ALA LYS GLN SEQRES 1 B 252 GLY SER HIS MET ALA PRO SER ARG LYS PHE PHE VAL GLY SEQRES 2 B 252 GLY ASN TRP LYS MET ASN GLY ARG LYS GLN SER LEU GLY SEQRES 3 B 252 GLU LEU ILE GLY THR LEU ASN ALA ALA LYS VAL PRO ALA SEQRES 4 B 252 ASP THR GLU VAL VAL CYS ALA PRO PRO THR ALA TYR ILE SEQRES 5 B 252 ASP PHE ALA ARG GLN LYS LEU ASP PRO LYS ILE ALA VAL SEQRES 6 B 252 ALA ALA GLN ASN CYS TYR LYS VAL THR ASN GLY ALA PHE SEQRES 7 B 252 THR GLY GLU ILE SER PRO GLY MET ILE LYS ASP CYS GLY SEQRES 8 B 252 ALA THR TRP VAL VAL LEU GLY HIS SER GLU ARG ARG HIS SEQRES 9 B 252 VAL PHE GLY GLU SER ASP GLU LEU ILE GLY GLN LYS VAL SEQRES 10 B 252 ALA HIS ALA LEU ALA GLU GLY LEU GLY VAL ILE ALA CYS SEQRES 11 B 252 ILE GLY GLU LYS LEU ASP GLU ARG GLU ALA GLY ILE THR SEQRES 12 B 252 GLU LYS VAL VAL PHE GLU GLN THR LYS VAL ILE ALA ASP SEQRES 13 B 252 ASN VAL LYS ASP TRP SER LYS VAL VAL LEU ALA TYR GLU SEQRES 14 B 252 PRO VAL TRP ALA ILE GLY THR GLY LYS THR ALA THR PRO SEQRES 15 B 252 GLN GLN ALA GLN GLU VAL HIS GLU LYS LEU ARG GLY TRP SEQRES 16 B 252 LEU LYS SER ASN VAL SER ASP ALA VAL ALA GLN SER THR SEQRES 17 B 252 ARG ILE ILE TYR GLY GLY SER VAL THR GLY ALA THR CYS SEQRES 18 B 252 LYS GLU LEU ALA SER GLN PRO ASP VAL ASP GLY PHE LEU SEQRES 19 B 252 VAL GLY GLY ALA SER LEU LYS PRO GLU LEU VAL ASP ILE SEQRES 20 B 252 ILE ASN ALA LYS GLN HET PGA A 301 18 HET GOL A 302 6 HET PGA B 301 18 HETNAM PGA 2-PHOSPHOGLYCOLIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 PGA 2(C2 H5 O6 P) FORMUL 4 GOL C3 H8 O3 FORMUL 6 HOH *702(H2 O) HELIX 1 AA1 ARG A 17 ALA A 31 1 15 HELIX 2 AA2 PRO A 44 ALA A 46 5 3 HELIX 3 AA3 TYR A 47 LEU A 55 1 9 HELIX 4 AA4 SER A 79 CYS A 86 1 8 HELIX 5 AA5 HIS A 95 VAL A 101 1 7 HELIX 6 AA6 SER A 105 GLU A 119 1 15 HELIX 7 AA7 LYS A 130 ALA A 136 1 7 HELIX 8 AA8 ILE A 138 ASP A 152 1 15 HELIX 9 AA9 ASP A 156 SER A 158 5 3 HELIX 10 AB1 PRO A 166 ILE A 170 5 5 HELIX 11 AB2 THR A 177 VAL A 196 1 20 HELIX 12 AB3 SER A 197 THR A 204 1 8 HELIX 13 AB4 THR A 216 SER A 222 1 7 HELIX 14 AB5 GLY A 232 LYS A 237 5 6 HELIX 15 AB6 PRO A 238 ASN A 245 1 8 HELIX 16 AB7 ARG B 17 ALA B 31 1 15 HELIX 17 AB8 PRO B 44 ALA B 46 5 3 HELIX 18 AB9 TYR B 47 LEU B 55 1 9 HELIX 19 AC1 SER B 79 CYS B 86 1 8 HELIX 20 AC2 HIS B 95 VAL B 101 1 7 HELIX 21 AC3 SER B 105 GLU B 119 1 15 HELIX 22 AC4 LYS B 130 ALA B 136 1 7 HELIX 23 AC5 ILE B 138 ASP B 152 1 15 HELIX 24 AC6 ASP B 156 SER B 158 5 3 HELIX 25 AC7 PRO B 166 ILE B 170 5 5 HELIX 26 AC8 THR B 177 VAL B 196 1 20 HELIX 27 AC9 SER B 197 THR B 204 1 8 HELIX 28 AD1 THR B 216 SER B 222 1 7 HELIX 29 AD2 GLY B 232 LYS B 237 5 6 HELIX 30 AD3 PRO B 238 ASN B 245 1 8 SHEET 1 AA1 9 PHE A 6 ASN A 11 0 SHEET 2 AA1 9 THR A 37 ALA A 42 1 O ALA A 42 N GLY A 10 SHEET 3 AA1 9 ALA A 60 ALA A 63 1 O ALA A 62 N CYS A 41 SHEET 4 AA1 9 TRP A 90 LEU A 93 1 O VAL A 92 N ALA A 63 SHEET 5 AA1 9 GLY A 122 ILE A 127 1 O CYS A 126 N LEU A 93 SHEET 6 AA1 9 VAL A 160 TYR A 164 1 O ALA A 163 N ILE A 127 SHEET 7 AA1 9 ILE A 206 GLY A 209 1 O ILE A 207 N TYR A 164 SHEET 8 AA1 9 GLY A 228 VAL A 231 1 O GLY A 228 N TYR A 208 SHEET 9 AA1 9 PHE A 6 ASN A 11 1 N ASN A 11 O VAL A 231 SHEET 1 AA2 9 PHE B 6 ASN B 11 0 SHEET 2 AA2 9 THR B 37 ALA B 42 1 O ALA B 42 N GLY B 10 SHEET 3 AA2 9 ALA B 60 ALA B 63 1 O ALA B 60 N CYS B 41 SHEET 4 AA2 9 TRP B 90 LEU B 93 1 O VAL B 92 N ALA B 63 SHEET 5 AA2 9 GLY B 122 ILE B 127 1 O CYS B 126 N LEU B 93 SHEET 6 AA2 9 VAL B 160 TYR B 164 1 O ALA B 163 N ALA B 125 SHEET 7 AA2 9 ILE B 206 GLY B 209 1 O ILE B 207 N TYR B 164 SHEET 8 AA2 9 GLY B 228 VAL B 231 1 O GLY B 228 N TYR B 208 SHEET 9 AA2 9 PHE B 6 ASN B 11 1 N ASN B 11 O VAL B 231 SITE 1 AC1 16 ASN A 11 LYS A 13 HIS A 95 GLU A 165 SITE 2 AC1 16 ALA A 169 ILE A 170 GLY A 171 GLY A 210 SITE 3 AC1 16 SER A 211 LEU A 230 GLY A 232 GLY A 233 SITE 4 AC1 16 HOH A 405 HOH A 409 HOH A 424 HOH A 425 SITE 1 AC2 7 ALA A 136 HOH A 583 HOH A 597 TRP B 168 SITE 2 AC2 7 LYS B 174 GLN B 180 HOH B 487 SITE 1 AC3 16 ASN B 11 LYS B 13 HIS B 95 GLU B 165 SITE 2 AC3 16 ALA B 169 ILE B 170 GLY B 171 GLY B 210 SITE 3 AC3 16 SER B 211 LEU B 230 GLY B 232 GLY B 233 SITE 4 AC3 16 HOH B 410 HOH B 415 HOH B 431 HOH B 439 CRYST1 47.830 75.160 151.920 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020907 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013305 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006582 0.00000