HEADER SIGNALING PROTEIN 18-OCT-19 6UPP TITLE RADIATION DAMAGE TEST OF PIXJ PB STATE CRYSTALS COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYL-ACCEPTING CHEMOTAXIS PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: GAF DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS ELONGATUS; SOURCE 3 ORGANISM_TAXID: 146786; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PHYTOCHROME CHROMOPHORE RADIATION DAMAGE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.A.CLINGER,M.D.MILLER,E.S.BURGIE,R.D.VIERSTRA,G.N.PHILLIPS JR. REVDAT 4 11-OCT-23 6UPP 1 REMARK HETSYN LINK REVDAT 3 22-JAN-20 6UPP 1 JRNL REVDAT 2 01-JAN-20 6UPP 1 JRNL REVDAT 1 18-DEC-19 6UPP 0 JRNL AUTH E.S.BURGIE,J.A.CLINGER,M.D.MILLER,A.S.BREWSTER,P.ALLER, JRNL AUTH 2 A.BUTRYN,F.D.FULLER,S.GUL,I.D.YOUNG,C.C.PHAM,I.S.KIM, JRNL AUTH 3 A.BHOWMICK,L.J.O'RIORDAN,K.D.SUTHERLIN,J.V.HEINEMANN, JRNL AUTH 4 A.BATYUK,R.ALONSO-MORI,M.S.HUNTER,J.E.KOGLIN,J.YANO, JRNL AUTH 5 V.K.YACHANDRA,N.K.SAUTER,A.E.COHEN,J.KERN,A.M.ORVILLE, JRNL AUTH 6 G.N.PHILLIPS JR.,R.D.VIERSTRA JRNL TITL PHOTOREVERSIBLE INTERCONVERSION OF A PHYTOCHROME JRNL TITL 2 PHOTOSENSORY MODULE IN THE CRYSTALLINE STATE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 300 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 31852825 JRNL DOI 10.1073/PNAS.1912041116 REMARK 2 REMARK 2 RESOLUTION. 1.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 43286 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2194 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.5750 - 3.9282 0.99 2788 133 0.1746 0.2144 REMARK 3 2 3.9282 - 3.1186 1.00 2670 128 0.1481 0.1616 REMARK 3 3 3.1186 - 2.7245 0.99 2590 153 0.1538 0.1803 REMARK 3 4 2.7245 - 2.4755 0.99 2576 130 0.1608 0.1928 REMARK 3 5 2.4755 - 2.2981 0.99 2584 131 0.1602 0.2014 REMARK 3 6 2.2981 - 2.1626 1.00 2557 147 0.1548 0.2049 REMARK 3 7 2.1626 - 2.0544 1.00 2554 142 0.1607 0.1731 REMARK 3 8 2.0544 - 1.9649 1.00 2578 132 0.1668 0.2160 REMARK 3 9 1.9649 - 1.8893 0.99 2525 144 0.1763 0.2187 REMARK 3 10 1.8893 - 1.8241 1.00 2543 128 0.1973 0.2053 REMARK 3 11 1.8241 - 1.7671 0.99 2547 148 0.1964 0.2167 REMARK 3 12 1.7671 - 1.7166 1.00 2546 137 0.2019 0.2583 REMARK 3 13 1.7166 - 1.6714 1.00 2528 136 0.2084 0.2204 REMARK 3 14 1.6714 - 1.6306 0.99 2530 133 0.2204 0.2838 REMARK 3 15 1.6306 - 1.5935 0.99 2530 138 0.2354 0.2641 REMARK 3 16 1.5935 - 1.5600 0.97 2446 134 0.2516 0.2672 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UPP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1000245007. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS 1.8.2-G5331DE77-RELEASE REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.6.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43374 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.560 REMARK 200 RESOLUTION RANGE LOW (A) : 38.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.11500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.62100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6P58 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: '100MM HEPES PH 7.5, 18% PEG 3350, REMARK 280 200MM MGCL', LIQUID DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.95500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.32150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.58950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.32150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.95500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.58950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 486 CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLY A 471 N CA C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 701 O HOH B 708 1.59 REMARK 500 O HOH A 828 O HOH A 851 1.95 REMARK 500 O HOH A 701 O HOH A 828 1.96 REMARK 500 O HOH A 776 O HOH A 848 2.02 REMARK 500 O HOH B 833 O HOH B 838 2.12 REMARK 500 NE2 HIS B 498 O HOH B 701 2.14 REMARK 500 O HOH A 706 O HOH A 806 2.18 REMARK 500 O HOH B 768 O HOH B 790 2.18 REMARK 500 O HOH A 820 O HOH A 827 2.18 REMARK 500 OD2 ASP B 513 O HOH B 703 2.19 REMARK 500 O HOH A 776 O HOH A 811 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 855 O HOH B 825 3545 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 498 -35.02 -134.26 REMARK 500 LYS A 531 97.73 80.19 REMARK 500 ASP B 487 -1.17 76.51 REMARK 500 HIS B 498 -30.89 -135.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 581 O REMARK 620 2 HIS A 584 O 85.0 REMARK 620 3 HOH A 720 O 94.9 178.2 REMARK 620 4 HOH A 722 O 167.6 83.3 96.7 REMARK 620 5 HOH A 743 O 91.8 95.1 86.8 93.1 REMARK 620 6 HOH A 775 O 87.0 91.0 87.2 89.3 173.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 604 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 709 O REMARK 620 2 HOH A 710 O 89.9 REMARK 620 3 HOH A 841 O 94.8 89.2 REMARK 620 4 HOH B 747 O 169.1 91.3 96.1 REMARK 620 5 HOH B 753 O 93.5 87.6 171.1 75.7 REMARK 620 6 HOH B 797 O 101.9 168.2 89.8 77.0 91.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 721 O REMARK 620 2 HOH A 732 O 81.3 REMARK 620 3 HOH A 773 O 83.9 87.7 REMARK 620 4 HOH A 837 O 174.1 96.2 90.7 REMARK 620 5 HOH B 742 O 91.2 152.3 65.0 88.6 REMARK 620 6 HOH B 760 O 87.1 96.6 169.4 98.5 109.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 604 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 581 O REMARK 620 2 HIS B 584 O 87.0 REMARK 620 3 HOH B 709 O 92.5 73.0 REMARK 620 4 HOH B 751 O 102.6 166.3 96.7 REMARK 620 5 HOH B 774 O 162.3 81.9 97.3 90.9 REMARK 620 6 HOH B 781 O 80.2 108.8 172.3 82.7 90.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VRB A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide VRB B 602 and CYS B REMARK 800 522 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide VRB B 602 and CYS B REMARK 800 494 DBREF 6UPP A 435 584 UNP Q8DLC7 Q8DLC7_THEEB 435 584 DBREF 6UPP B 435 584 UNP Q8DLC7 Q8DLC7_THEEB 435 584 SEQADV 6UPP ALA A 555 UNP Q8DLC7 CYS 555 CONFLICT SEQADV 6UPP ALA B 555 UNP Q8DLC7 CYS 555 CONFLICT SEQRES 1 A 150 SER GLU LEU ARG ASP ARG GLN ALA ILE PHE GLU THR LEU SEQRES 2 A 150 VAL ALA LYS GLY ARG GLU LEU LEU ALA CYS ASP ARG VAL SEQRES 3 A 150 ILE VAL TYR ALA PHE ASP ASP ASN TYR VAL GLY THR VAL SEQRES 4 A 150 VAL ALA GLU SER VAL ALA GLU GLY TRP PRO GLN ALA ARG SEQRES 5 A 150 ASP GLN VAL ILE GLU ASP PRO CYS PHE ARG GLU HIS TRP SEQRES 6 A 150 VAL GLU ALA TYR ARG GLN GLY ARG ILE GLN ALA THR THR SEQRES 7 A 150 ASP ILE PHE LYS ALA GLY LEU THR GLU CYS HIS LEU ASN SEQRES 8 A 150 GLN LEU ARG PRO LEU LYS VAL ARG ALA ASN LEU VAL VAL SEQRES 9 A 150 PRO MET VAL ILE ASP ASP GLN LEU PHE GLY LEU LEU ILE SEQRES 10 A 150 ALA HIS GLN ALA SER GLU PRO ARG GLN TRP GLN GLU ILE SEQRES 11 A 150 GLU ILE ASP GLN PHE SER GLU LEU ALA SER THR GLY SER SEQRES 12 A 150 LEU VAL LEU GLU ARG LEU HIS SEQRES 1 B 150 SER GLU LEU ARG ASP ARG GLN ALA ILE PHE GLU THR LEU SEQRES 2 B 150 VAL ALA LYS GLY ARG GLU LEU LEU ALA CYS ASP ARG VAL SEQRES 3 B 150 ILE VAL TYR ALA PHE ASP ASP ASN TYR VAL GLY THR VAL SEQRES 4 B 150 VAL ALA GLU SER VAL ALA GLU GLY TRP PRO GLN ALA ARG SEQRES 5 B 150 ASP GLN VAL ILE GLU ASP PRO CYS PHE ARG GLU HIS TRP SEQRES 6 B 150 VAL GLU ALA TYR ARG GLN GLY ARG ILE GLN ALA THR THR SEQRES 7 B 150 ASP ILE PHE LYS ALA GLY LEU THR GLU CYS HIS LEU ASN SEQRES 8 B 150 GLN LEU ARG PRO LEU LYS VAL ARG ALA ASN LEU VAL VAL SEQRES 9 B 150 PRO MET VAL ILE ASP ASP GLN LEU PHE GLY LEU LEU ILE SEQRES 10 B 150 ALA HIS GLN ALA SER GLU PRO ARG GLN TRP GLN GLU ILE SEQRES 11 B 150 GLU ILE ASP GLN PHE SER GLU LEU ALA SER THR GLY SER SEQRES 12 B 150 LEU VAL LEU GLU ARG LEU HIS HET VRB A 601 81 HET MG A 602 1 HET EDO A 603 10 HET MG A 604 1 HET MG B 601 1 HET VRB B 602 81 HET EDO B 603 10 HET MG B 604 1 HET EDO B 605 10 HETNAM VRB PHYCOVIOLOBILIN, BLUE LIGHT-ABSORBING FORM HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN VRB 3-[5-[(3-ETHYL-4-METHYL-5-OXIDANYLIDENE-1,2- HETSYN 2 VRB DIHYDROPYRROL-2-YL)METHYL]-2-[[5-[(Z)-(4-ETHYL-3- HETSYN 3 VRB METHYL-5-OXIDANYLIDENE-PYR ROL-2-YLIDENE)METHYL]-3-(3- HETSYN 4 VRB HYDROXY-3-OXOPROPYL)-4-METHYL-1H-PYRROL-2-YL]METHYL]- HETSYN 5 VRB 4-METHYL-1H-PYRROL-3-YL]PROPANOIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 3 VRB 2(C33 H42 N4 O6) FORMUL 4 MG 4(MG 2+) FORMUL 5 EDO 3(C2 H6 O2) FORMUL 12 HOH *307(H2 O) HELIX 1 AA1 SER A 435 ALA A 456 1 22 HELIX 2 AA2 PRO A 493 TRP A 499 1 7 HELIX 3 AA3 TRP A 499 GLN A 505 1 7 HELIX 4 AA4 ASP A 513 ALA A 517 5 5 HELIX 5 AA5 THR A 520 ARG A 528 1 9 HELIX 6 AA6 GLN A 562 HIS A 584 1 23 HELIX 7 AA7 GLU B 436 ALA B 456 1 21 HELIX 8 AA8 PRO B 493 TRP B 499 1 7 HELIX 9 AA9 TRP B 499 GLN B 505 1 7 HELIX 10 AB1 ASP B 513 ALA B 517 5 5 HELIX 11 AB2 THR B 520 ARG B 528 1 9 HELIX 12 AB3 GLN B 562 HIS B 584 1 23 SHEET 1 AA1 6 VAL A 489 ILE A 490 0 SHEET 2 AA1 6 GLY A 471 VAL A 478 -1 N GLY A 471 O ILE A 490 SHEET 3 AA1 6 ARG A 459 PHE A 465 -1 N ALA A 464 O THR A 472 SHEET 4 AA1 6 GLN A 545 GLN A 554 -1 O HIS A 553 N ARG A 459 SHEET 5 AA1 6 ALA A 534 ILE A 542 -1 N VAL A 538 O LEU A 550 SHEET 6 AA1 6 GLN A 509 THR A 511 -1 N THR A 511 O ASN A 535 SHEET 1 AA2 6 VAL B 489 ILE B 490 0 SHEET 2 AA2 6 GLY B 471 VAL B 478 -1 N GLY B 471 O ILE B 490 SHEET 3 AA2 6 ARG B 459 PHE B 465 -1 N ALA B 464 O THR B 472 SHEET 4 AA2 6 GLN B 545 ALA B 555 -1 O HIS B 553 N ARG B 459 SHEET 5 AA2 6 VAL B 532 ILE B 542 -1 N ARG B 533 O GLN B 554 SHEET 6 AA2 6 GLN B 509 THR B 511 -1 N GLN B 509 O VAL B 537 LINK SG CYS A 494 C16 VRB A 601 1555 1555 1.78 LINK SG CYS A 522 C02 VRB A 601 1555 1555 1.72 LINK SG CYS B 494 C16 VRB B 602 1555 1555 1.79 LINK SG CYS B 522 C02 VRB B 602 1555 1555 1.76 LINK O GLU A 581 MG MG A 602 1555 1555 2.13 LINK O HIS A 584 MG MG A 602 1555 1555 2.06 LINK MG MG A 602 O HOH A 720 1555 1555 2.00 LINK MG MG A 602 O HOH A 722 1555 1555 2.10 LINK MG MG A 602 O HOH A 743 1555 1555 1.98 LINK MG MG A 602 O HOH A 775 1555 1655 2.18 LINK MG MG A 604 O HOH A 709 1555 1655 2.08 LINK MG MG A 604 O HOH A 710 1555 1555 1.95 LINK MG MG A 604 O HOH A 841 1555 1555 2.05 LINK MG MG A 604 O HOH B 747 1555 1555 2.00 LINK MG MG A 604 O HOH B 753 1555 1555 1.88 LINK MG MG A 604 O HOH B 797 1555 1555 2.00 LINK O HOH A 721 MG MG B 601 1555 1555 2.04 LINK O HOH A 732 MG MG B 601 1555 1555 2.04 LINK O HOH A 773 MG MG B 601 1555 1555 2.36 LINK O HOH A 837 MG MG B 601 1555 1555 1.98 LINK O GLU B 581 MG MG B 604 1555 1555 2.10 LINK O HIS B 584 MG MG B 604 1555 1555 2.16 LINK MG MG B 601 O HOH B 742 1555 3555 2.14 LINK MG MG B 601 O HOH B 760 1555 1555 1.99 LINK MG MG B 604 O HOH B 709 1555 1555 1.84 LINK MG MG B 604 O HOH B 751 1555 1555 1.96 LINK MG MG B 604 O HOH B 774 1555 1555 2.26 LINK MG MG B 604 O HOH B 781 1555 1555 2.34 SITE 1 AC1 23 TYR A 463 ASP A 492 PRO A 493 CYS A 494 SITE 2 AC1 23 PHE A 495 HIS A 498 TRP A 499 TYR A 503 SITE 3 AC1 23 ARG A 507 GLN A 509 THR A 520 CYS A 522 SITE 4 AC1 23 HIS A 523 GLN A 526 LEU A 530 ASN A 535 SITE 5 AC1 23 ILE A 551 HIS A 553 HOH A 716 HOH A 729 SITE 6 AC1 23 HOH A 739 HOH A 750 HIS B 498 SITE 1 AC2 6 GLU A 581 HIS A 584 HOH A 720 HOH A 722 SITE 2 AC2 6 HOH A 743 HOH A 775 SITE 1 AC3 5 ARG A 452 ALA A 479 HOH A 767 HOH A 777 SITE 2 AC3 5 TRP B 482 SITE 1 AC4 6 HOH A 709 HOH A 710 HOH A 841 HOH B 747 SITE 2 AC4 6 HOH B 753 HOH B 797 SITE 1 AC5 6 HOH A 721 HOH A 732 HOH A 773 HOH A 837 SITE 2 AC5 6 HOH B 742 HOH B 760 SITE 1 AC6 6 GLN B 509 THR B 511 HIS B 523 LEU B 527 SITE 2 AC6 6 ASN B 535 VRB B 602 SITE 1 AC7 6 GLU B 581 HIS B 584 HOH B 709 HOH B 751 SITE 2 AC7 6 HOH B 774 HOH B 781 SITE 1 AC8 4 THR B 512 ARG B 559 GLN B 560 TRP B 561 SITE 1 AC9 26 ARG A 507 TYR B 463 ASP B 492 PRO B 493 SITE 2 AC9 26 CYS B 494 PHE B 495 TRP B 499 TYR B 503 SITE 3 AC9 26 ARG B 507 GLN B 509 THR B 520 GLU B 521 SITE 4 AC9 26 HIS B 523 LEU B 524 ASN B 525 GLN B 526 SITE 5 AC9 26 LEU B 527 LEU B 530 ASN B 535 ILE B 551 SITE 6 AC9 26 HIS B 553 EDO B 603 HOH B 732 HOH B 750 SITE 7 AC9 26 HOH B 777 HOH B 806 SITE 1 AD1 24 ARG A 507 TYR B 463 ASP B 492 PRO B 493 SITE 2 AD1 24 PHE B 495 ARG B 496 GLU B 497 HIS B 498 SITE 3 AD1 24 TRP B 499 TYR B 503 ARG B 507 GLN B 509 SITE 4 AD1 24 THR B 520 CYS B 522 HIS B 523 GLN B 526 SITE 5 AD1 24 LEU B 527 LEU B 530 ASN B 535 ILE B 551 SITE 6 AD1 24 HIS B 553 EDO B 603 HOH B 732 HOH B 750 CRYST1 41.910 61.179 116.643 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023861 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016346 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008573 0.00000