HEADER PROTEIN BINDING 18-OCT-19 6UPT TITLE TUDOR DOMAIN OF TUMOR SUPPRESSOR P53BP1 WITH MFP-2706 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TP53-BINDING PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TP53BP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: -V2R-PRARE2; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS 53BP1, TUDOR, MFP-2706, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR J.THE,A.DONG,S.HEADEY,M.GUNZBURG,B.DOAK,L.I.JAMES,C.BOUNTRA, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,P.J.BROWN,STRUCTURAL GENOMICS CONSORTIUM AUTHOR 3 (SGC) REVDAT 2 11-OCT-23 6UPT 1 REMARK REVDAT 1 20-NOV-19 6UPT 0 JRNL AUTH J.THE,A.DONG,S.HEADEY,M.GUNZBURG,B.DOAK,L.I.JAMES,C.BOUNTRA, JRNL AUTH 2 C.H.ARROWSMITH,A.M.EDWARDS,P.J.BROWN, JRNL AUTH 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL TUDOR DOMAIN OF TUMOR SUPPRESSOR P53BP1 WITH MFP-2706 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0253 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 22255 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1189 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.96 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.01 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1625 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1808 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 89 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.162 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.150 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.111 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.927 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1883 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1698 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2544 ; 1.461 ; 1.640 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3888 ; 1.326 ; 1.592 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 241 ; 8.027 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 93 ;26.528 ;20.538 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 295 ;15.025 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;16.507 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 225 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2216 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 448 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6UPT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1000244738. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23455 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.10 REMARK 200 R MERGE FOR SHELL (I) : 0.95000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 4RG2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULFATE, 0.1 M HEPES PH REMARK 280 7.5, 2% PEG 400, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 62.52500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.52500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.52500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.52500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 62.52500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 62.52500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 62.52500 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 62.52500 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 62.52500 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 62.52500 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 62.52500 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 62.52500 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 62.52500 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 62.52500 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 62.52500 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 62.52500 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 62.52500 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 62.52500 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 62.52500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 62.52500 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 62.52500 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 62.52500 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 62.52500 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 62.52500 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 62.52500 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 62.52500 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 62.52500 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 62.52500 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 62.52500 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 62.52500 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 62.52500 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 62.52500 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 62.52500 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 62.52500 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 62.52500 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 62.52500 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE AUTHOR STATES THAT THE BIOLOGICAL UNIT OF THIS PROTEIN REMARK 300 IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1483 REMARK 465 ASN A 1484 REMARK 465 PRO A 1604 REMARK 465 TYR A 1605 REMARK 465 GLU A 1606 REMARK 465 GLY B 1483 REMARK 465 ASN B 1484 REMARK 465 SER B 1485 REMARK 465 GLU B 1606 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A1486 CE1 CE2 CZ REMARK 470 VAL A1487 CG1 CG2 REMARK 470 SER A1496 OG REMARK 470 SER A1497 OG REMARK 470 ALA A1512 CB REMARK 470 LYS A1514 CE NZ REMARK 470 LYS A1530 CD CE NZ REMARK 470 GLU A1549 CD OE1 OE2 REMARK 470 ASP A1550 CG OD1 OD2 REMARK 470 GLU A1551 CG CD OE1 OE2 REMARK 470 GLU A1564 CD OE1 OE2 REMARK 470 LYS A1579 CE NZ REMARK 470 LYS A1582 NZ REMARK 470 GLU A1598 CG CD OE1 OE2 REMARK 470 VAL B1487 CB CG1 CG2 REMARK 470 SER B1497 OG REMARK 470 LYS B1505 CD CE NZ REMARK 470 ARG B1508 CG CD NE CZ NH1 NH2 REMARK 470 ASP B1509 OD1 OD2 REMARK 470 ALA B1512 CB REMARK 470 LYS B1514 CG CD CE NZ REMARK 470 LYS B1516 CG CD CE NZ REMARK 470 LYS B1530 CE NZ REMARK 470 GLU B1543 CG CD OE1 OE2 REMARK 470 SER B1548 OG REMARK 470 GLU B1549 CG CD OE1 OE2 REMARK 470 ASP B1550 CG OD1 OD2 REMARK 470 GLU B1551 CG CD OE1 OE2 REMARK 470 TYR B1552 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B1574 NZ REMARK 470 GLU B1575 CG CD OE1 OE2 REMARK 470 GLN B1577 CG CD OE1 NE2 REMARK 470 LYS B1579 CG CD CE NZ REMARK 470 LYS B1582 CE NZ REMARK 470 LEU B1590 CB CG CD1 CD2 REMARK 470 GLU B1598 CG CD OE1 OE2 REMARK 470 GLN B1599 OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS B 1530 NH1 ARG B 1597 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 UNK UNX A 1702 UNK UNX A 1702 16556 1.99 REMARK 500 O HOH A 1854 O HOH A 1854 16556 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A1534 42.41 -97.35 REMARK 500 SER B1548 -94.99 -87.47 REMARK 500 SER B1589 159.91 -45.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QFM A 1701 DBREF 6UPT A 1483 1606 UNP A6NNK5 A6NNK5_HUMAN 1438 1561 DBREF 6UPT B 1483 1606 UNP A6NNK5 A6NNK5_HUMAN 1438 1561 SEQRES 1 A 124 GLY ASN SER PHE VAL GLY LEU ARG VAL VAL ALA LYS TRP SEQRES 2 A 124 SER SER ASN GLY TYR PHE TYR SER GLY LYS ILE THR ARG SEQRES 3 A 124 ASP VAL GLY ALA GLY LYS TYR LYS LEU LEU PHE ASP ASP SEQRES 4 A 124 GLY TYR GLU CYS ASP VAL LEU GLY LYS ASP ILE LEU LEU SEQRES 5 A 124 CYS ASP PRO ILE PRO LEU ASP THR GLU VAL THR ALA LEU SEQRES 6 A 124 SER GLU ASP GLU TYR PHE SER ALA GLY VAL VAL LYS GLY SEQRES 7 A 124 HIS ARG LYS GLU SER GLY GLU LEU TYR TYR SER ILE GLU SEQRES 8 A 124 LYS GLU GLY GLN ARG LYS TRP TYR LYS ARG MET ALA VAL SEQRES 9 A 124 ILE LEU SER LEU GLU GLN GLY ASN ARG LEU ARG GLU GLN SEQRES 10 A 124 TYR GLY LEU GLY PRO TYR GLU SEQRES 1 B 124 GLY ASN SER PHE VAL GLY LEU ARG VAL VAL ALA LYS TRP SEQRES 2 B 124 SER SER ASN GLY TYR PHE TYR SER GLY LYS ILE THR ARG SEQRES 3 B 124 ASP VAL GLY ALA GLY LYS TYR LYS LEU LEU PHE ASP ASP SEQRES 4 B 124 GLY TYR GLU CYS ASP VAL LEU GLY LYS ASP ILE LEU LEU SEQRES 5 B 124 CYS ASP PRO ILE PRO LEU ASP THR GLU VAL THR ALA LEU SEQRES 6 B 124 SER GLU ASP GLU TYR PHE SER ALA GLY VAL VAL LYS GLY SEQRES 7 B 124 HIS ARG LYS GLU SER GLY GLU LEU TYR TYR SER ILE GLU SEQRES 8 B 124 LYS GLU GLY GLN ARG LYS TRP TYR LYS ARG MET ALA VAL SEQRES 9 B 124 ILE LEU SER LEU GLU GLN GLY ASN ARG LEU ARG GLU GLN SEQRES 10 B 124 TYR GLY LEU GLY PRO TYR GLU HET QFM A1701 14 HET UNX A1702 1 HET UNX A1703 1 HET UNX A1704 1 HET UNX B1701 1 HET UNX B1702 1 HETNAM QFM 2-((2-CHLOROBENZYL)THIO)-4,5-DIHYDRO-1H-IMIDAZOLE HETNAM UNX UNKNOWN ATOM OR ION HETSYN QFM 2-{[(2-CHLOROPHENYL)METHYL]SULFANYL}-4,5-DIHYDRO-1H- HETSYN 2 QFM IMIDAZOLE FORMUL 3 QFM C10 H11 CL N2 S FORMUL 4 UNX 5(X) FORMUL 9 HOH *89(H2 O) HELIX 1 AA1 SER A 1589 ARG A 1595 1 7 HELIX 2 AA2 LEU A 1596 GLY A 1601 1 6 HELIX 3 AA3 SER B 1589 ARG B 1595 1 7 HELIX 4 AA4 LEU B 1596 GLY B 1601 1 6 SHEET 1 AA1 5 GLU A1524 LEU A1528 0 SHEET 2 AA1 5 LYS A1514 PHE A1519 -1 N LEU A1517 O CYS A1525 SHEET 3 AA1 5 PHE A1501 ASP A1509 -1 N ARG A1508 O LYS A1516 SHEET 4 AA1 5 ARG A1490 LYS A1494 -1 N VAL A1491 O GLY A1504 SHEET 5 AA1 5 ILE A1532 LEU A1533 -1 O LEU A1533 N VAL A1492 SHEET 1 AA2 6 GLN A1577 LYS A1582 0 SHEET 2 AA2 6 GLU A1567 LYS A1574 -1 N ILE A1572 O LYS A1579 SHEET 3 AA2 6 PHE A1553 GLU A1564 -1 N LYS A1559 O SER A1571 SHEET 4 AA2 6 PHE B1553 GLU B1564 -1 O LYS B1559 N LYS A1563 SHEET 5 AA2 6 GLU B1567 LYS B1574 -1 O TYR B1569 N ARG B1562 SHEET 6 AA2 6 GLN B1577 LYS B1582 -1 O TYR B1581 N TYR B1570 SHEET 1 AA3 6 VAL A1586 ILE A1587 0 SHEET 2 AA3 6 GLU A1543 LEU A1547 -1 N THR A1545 O ILE A1587 SHEET 3 AA3 6 PHE A1553 GLU A1564 -1 O SER A1554 N ALA A1546 SHEET 4 AA3 6 PHE B1553 GLU B1564 -1 O LYS B1559 N LYS A1563 SHEET 5 AA3 6 GLU B1543 LEU B1547 -1 N ALA B1546 O SER B1554 SHEET 6 AA3 6 VAL B1586 ILE B1587 -1 O ILE B1587 N THR B1545 SHEET 1 AA4 5 GLU B1524 LEU B1528 0 SHEET 2 AA4 5 LYS B1514 PHE B1519 -1 N LEU B1517 O CYS B1525 SHEET 3 AA4 5 PHE B1501 GLY B1511 -1 N THR B1507 O LYS B1516 SHEET 4 AA4 5 ARG B1490 LYS B1494 -1 N ALA B1493 O TYR B1502 SHEET 5 AA4 5 ILE B1532 LEU B1533 -1 O LEU B1533 N VAL B1492 CISPEP 1 ASP A 1536 PRO A 1537 0 -2.82 CISPEP 2 ASP B 1536 PRO B 1537 0 -1.44 SITE 1 AC1 9 TRP A1495 TYR A1502 SER A1503 PHE A1519 SITE 2 AC1 9 ASP A1520 ASP A1521 TYR A1523 PHE A1553 SITE 3 AC1 9 MET A1584 CRYST1 125.050 125.050 125.050 90.00 90.00 90.00 I 21 3 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007997 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007997 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007997 0.00000