HEADER METAL TRANSPORT 28-OCT-19 6USU TITLE CRYSTAL STRUCTURE OF GLUN1/GLUN2A LIGAND-BINDING DOMAIN IN COMPLEX TITLE 2 WITH L689,560 AND GLUTAMATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE RECEPTOR IONOTROPIC, NMDA 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 415-565, 684-821; COMPND 5 SYNONYM: GLUN1,GLUTAMATE [NMDA] RECEPTOR SUBUNIT ZETA-1,N-METHYL-D- COMPND 6 ASPARTATE RECEPTOR SUBUNIT NR1,NMD-R1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: GLUTAMATE RECEPTOR IONOTROPIC, NMDA 2A; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 402-539, 661-802; COMPND 12 SYNONYM: GLUN2A,GLUTAMATE [NMDA] RECEPTOR SUBUNIT EPSILON-1,N-METHYL COMPND 13 D-ASPARTATE RECEPTOR SUBTYPE 2A,NR2A; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: GRIN1, NMDAR1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 10 ORGANISM_COMMON: RAT; SOURCE 11 ORGANISM_TAXID: 10116; SOURCE 12 GENE: GRIN2A; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 83333 KEYWDS NMDARS, LBD, ION CHANNELS, METAL TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR A.ROMERO-HERNANDEZ,N.TAJIMA,T.CHOU,H.FURUKAWA REVDAT 3 11-OCT-23 6USU 1 REMARK REVDAT 2 05-AUG-20 6USU 1 JRNL REVDAT 1 15-JUL-20 6USU 0 JRNL AUTH T.H.CHOU,N.TAJIMA,A.ROMERO-HERNANDEZ,H.FURUKAWA JRNL TITL STRUCTURAL BASIS OF FUNCTIONAL TRANSITIONS IN MAMMALIAN NMDA JRNL TITL 2 RECEPTORS. JRNL REF CELL V. 182 357 2020 JRNL REFN ISSN 1097-4172 JRNL PMID 32610085 JRNL DOI 10.1016/J.CELL.2020.05.052 REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 38642 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1881 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.1610 - 4.9155 1.00 3043 160 0.1847 0.1895 REMARK 3 2 4.9155 - 3.9028 1.00 2940 143 0.1484 0.1891 REMARK 3 3 3.9028 - 3.4099 1.00 2874 158 0.1726 0.1940 REMARK 3 4 3.4099 - 3.0982 1.00 2889 134 0.2020 0.2237 REMARK 3 5 3.0982 - 2.8763 1.00 2874 126 0.2096 0.2349 REMARK 3 6 2.8763 - 2.7067 1.00 2823 138 0.2030 0.2385 REMARK 3 7 2.7067 - 2.5712 1.00 2829 149 0.2016 0.2358 REMARK 3 8 2.5712 - 2.4593 1.00 2834 152 0.2099 0.2599 REMARK 3 9 2.4593 - 2.3646 1.00 2827 153 0.2045 0.2627 REMARK 3 10 2.3646 - 2.2830 1.00 2798 165 0.2063 0.2561 REMARK 3 11 2.2830 - 2.2117 1.00 2855 131 0.2048 0.2719 REMARK 3 12 2.2117 - 2.1485 0.99 2758 157 0.2180 0.2661 REMARK 3 13 2.1485 - 2.0920 0.86 2417 115 0.2230 0.2836 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.56 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6USU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1000245155. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38873 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.62000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4NF8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M HEPES, PH 7.0, 60-90 MM SODIUM REMARK 280 CHLORIDE, 15-20% PEG2000 MME, EVAPORATION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.02000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.49350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.67050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.49350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.02000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.67050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 MET A 2 REMARK 465 SER A 3 REMARK 465 THR A 4 REMARK 465 THR A 50 REMARK 465 SER A 51 REMARK 465 PRO A 52 REMARK 465 ASN A 99 REMARK 465 ASN A 100 REMARK 465 SER A 101 REMARK 465 ASN A 102 REMARK 465 GLY A 153 REMARK 465 LYS A 235 REMARK 465 GLN A 288 REMARK 465 GLU A 289 REMARK 465 CYS A 290 REMARK 465 ASP A 291 REMARK 465 SER A 292 REMARK 465 SER B 4 REMARK 465 ASP B 5 REMARK 465 HIS B 285 REMARK 465 ASN B 286 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 5 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 34 CG1 CG2 REMARK 470 SER A 54 OG REMARK 470 GLU A 83 CG CD OE1 OE2 REMARK 470 GLU A 96 CG CD OE1 OE2 REMARK 470 ARG A 97 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 98 CG1 CG2 REMARK 470 LYS A 103 CG CD CE NZ REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 GLU A 105 CG CD OE1 OE2 REMARK 470 LYS A 151 CG CD CE NZ REMARK 470 LYS A 152 CG CD CE NZ REMARK 470 GLN A 234 CG CD OE1 NE2 REMARK 470 CYS A 236 SG REMARK 470 ARG A 286 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 287 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU B 28 CG CD1 CD2 REMARK 470 GLU B 30 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 7 CE NZ REMARK 480 LYS A 29 CE NZ REMARK 480 ASN A 35 CG OD1 ND2 REMARK 480 LYS A 40 CE NZ REMARK 480 ARG A 155 CB CG CD NE CZ NH1 NH2 REMARK 480 LYS A 177 CD CE NZ REMARK 480 GLU A 190 CD OE1 OE2 REMARK 480 GLN A 211 CG CD OE1 NE2 REMARK 480 ARG A 214 CA REMARK 480 ASN A 216 CB CG OD1 ND2 REMARK 480 LYS A 217 CE NZ REMARK 480 GLU A 243 CG CD OE1 OE2 REMARK 480 GLN A 262 CD REMARK 480 LYS A 270 NZ REMARK 480 LYS A 282 CE NZ REMARK 480 ASP B 6 N CA CG OD1 OD2 REMARK 480 GLU B 30 CB REMARK 480 ARG B 34 NE CZ NH1 NH2 REMARK 480 ASN B 50 CG OD1 ND2 REMARK 480 GLU B 51 CG CD OE1 OE2 REMARK 480 LYS B 56 NZ REMARK 480 LYS B 75 CE NZ REMARK 480 LYS B 87 CE NZ REMARK 480 GLN B 145 OE1 NE2 REMARK 480 LYS B 152 CD CE NZ REMARK 480 SER B 161 CB OG REMARK 480 LYS B 208 CE NZ REMARK 480 GLU B 227 CG CD OE1 REMARK 480 LYS B 230 CE NZ REMARK 480 GLU B 274 CG CD OE1 OE2 REMARK 480 GLU B 276 OE1 OE2 REMARK 480 ILE B 283 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 485 O HOH A 506 1.90 REMARK 500 OD1 ASP A 257 O HOH A 401 1.94 REMARK 500 O HOH B 402 O HOH B 504 2.03 REMARK 500 O HOH B 446 O HOH B 531 2.11 REMARK 500 OH TYR B 105 O HOH B 401 2.15 REMARK 500 O HOH A 435 O HOH A 507 2.16 REMARK 500 OD2 ASP B 199 O HOH B 402 2.16 REMARK 500 O HOH B 516 O HOH B 518 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 430 O HOH A 503 1455 2.12 REMARK 500 O HOH B 407 O HOH B 521 4445 2.16 REMARK 500 O HOH A 401 O HOH A 498 3555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 175 -157.14 -133.77 REMARK 500 SER A 248 -135.31 -160.47 REMARK 500 GLU B 16 102.44 -163.12 REMARK 500 VAL B 33 -161.10 -125.82 REMARK 500 ARG B 34 -130.89 46.85 REMARK 500 LYS B 75 71.79 72.85 REMARK 500 LYS B 87 -111.20 -124.34 REMARK 500 ASN B 97 -169.97 -106.01 REMARK 500 SER B 236 69.71 -150.25 REMARK 500 THR B 243 -147.36 -153.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QGM A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLU B 301 DBREF 6USU A 2 152 UNP P35439 NMDZ1_RAT 415 565 DBREF 6USU A 155 292 UNP P35439 NMDZ1_RAT 684 821 DBREF 6USU B 5 142 UNP Q00959 NMDE1_RAT 402 539 DBREF 6USU B 145 286 UNP Q00959 NMDE1_RAT 661 802 SEQADV 6USU GLY A 1 UNP P35439 EXPRESSION TAG SEQADV 6USU GLY A 153 UNP P35439 LINKER SEQADV 6USU THR A 154 UNP P35439 LINKER SEQADV 6USU SER B 4 UNP Q00959 EXPRESSION TAG SEQADV 6USU GLY B 143 UNP Q00959 LINKER SEQADV 6USU THR B 144 UNP Q00959 LINKER SEQADV 6USU THR B 242 UNP Q00959 SER 758 CONFLICT SEQRES 1 A 292 GLY MET SER THR ARG LEU LYS ILE VAL THR ILE HIS GLN SEQRES 2 A 292 GLU PRO PHE VAL TYR VAL LYS PRO THR MET SER ASP GLY SEQRES 3 A 292 THR CYS LYS GLU GLU PHE THR VAL ASN GLY ASP PRO VAL SEQRES 4 A 292 LYS LYS VAL ILE CYS THR GLY PRO ASN ASP THR SER PRO SEQRES 5 A 292 GLY SER PRO ARG HIS THR VAL PRO GLN CYS CYS TYR GLY SEQRES 6 A 292 PHE CYS ILE ASP LEU LEU ILE LYS LEU ALA ARG THR MET SEQRES 7 A 292 ASN PHE THR TYR GLU VAL HIS LEU VAL ALA ASP GLY LYS SEQRES 8 A 292 PHE GLY THR GLN GLU ARG VAL ASN ASN SER ASN LYS LYS SEQRES 9 A 292 GLU TRP ASN GLY MET MET GLY GLU LEU LEU SER GLY GLN SEQRES 10 A 292 ALA ASP MET ILE VAL ALA PRO LEU THR ILE ASN ASN GLU SEQRES 11 A 292 ARG ALA GLN TYR ILE GLU PHE SER LYS PRO PHE LYS TYR SEQRES 12 A 292 GLN GLY LEU THR ILE LEU VAL LYS LYS GLY THR ARG ILE SEQRES 13 A 292 THR GLY ILE ASN ASP PRO ARG LEU ARG ASN PRO SER ASP SEQRES 14 A 292 LYS PHE ILE TYR ALA THR VAL LYS GLN SER SER VAL ASP SEQRES 15 A 292 ILE TYR PHE ARG ARG GLN VAL GLU LEU SER THR MET TYR SEQRES 16 A 292 ARG HIS MET GLU LYS HIS ASN TYR GLU SER ALA ALA GLU SEQRES 17 A 292 ALA ILE GLN ALA VAL ARG ASP ASN LYS LEU HIS ALA PHE SEQRES 18 A 292 ILE TRP ASP SER ALA VAL LEU GLU PHE GLU ALA SER GLN SEQRES 19 A 292 LYS CYS ASP LEU VAL THR THR GLY GLU LEU PHE PHE ARG SEQRES 20 A 292 SER GLY PHE GLY ILE GLY MET ARG LYS ASP SER PRO TRP SEQRES 21 A 292 LYS GLN ASN VAL SER LEU SER ILE LEU LYS SER HIS GLU SEQRES 22 A 292 ASN GLY PHE MET GLU ASP LEU ASP LYS THR TRP VAL ARG SEQRES 23 A 292 TYR GLN GLU CYS ASP SER SEQRES 1 B 283 SER ASP ASP ASN HIS LEU SER ILE VAL THR LEU GLU GLU SEQRES 2 B 283 ALA PRO PHE VAL ILE VAL GLU ASP ILE ASP PRO LEU THR SEQRES 3 B 283 GLU THR CYS VAL ARG ASN THR VAL PRO CYS ARG LYS PHE SEQRES 4 B 283 VAL LYS ILE ASN ASN SER THR ASN GLU GLY MET ASN VAL SEQRES 5 B 283 LYS LYS CYS CYS LYS GLY PHE CYS ILE ASP ILE LEU LYS SEQRES 6 B 283 LYS LEU SER ARG THR VAL LYS PHE THR TYR ASP LEU TYR SEQRES 7 B 283 LEU VAL THR ASN GLY LYS HIS GLY LYS LYS VAL ASN ASN SEQRES 8 B 283 VAL TRP ASN GLY MET ILE GLY GLU VAL VAL TYR GLN ARG SEQRES 9 B 283 ALA VAL MET ALA VAL GLY SER LEU THR ILE ASN GLU GLU SEQRES 10 B 283 ARG SER GLU VAL VAL ASP PHE SER VAL PRO PHE VAL GLU SEQRES 11 B 283 THR GLY ILE SER VAL MET VAL SER ARG GLY THR GLN VAL SEQRES 12 B 283 THR GLY LEU SER ASP LYS LYS PHE GLN ARG PRO HIS ASP SEQRES 13 B 283 TYR SER PRO PRO PHE ARG PHE GLY THR VAL PRO ASN GLY SEQRES 14 B 283 SER THR GLU ARG ASN ILE ARG ASN ASN TYR PRO TYR MET SEQRES 15 B 283 HIS GLN TYR MET THR ARG PHE ASN GLN ARG GLY VAL GLU SEQRES 16 B 283 ASP ALA LEU VAL SER LEU LYS THR GLY LYS LEU ASP ALA SEQRES 17 B 283 PHE ILE TYR ASP ALA ALA VAL LEU ASN TYR LYS ALA GLY SEQRES 18 B 283 ARG ASP GLU GLY CYS LYS LEU VAL THR ILE GLY SER GLY SEQRES 19 B 283 TYR ILE PHE ALA THR THR GLY TYR GLY ILE ALA LEU GLN SEQRES 20 B 283 LYS GLY SER PRO TRP LYS ARG GLN ILE ASP LEU ALA LEU SEQRES 21 B 283 LEU GLN PHE VAL GLY ASP GLY GLU MET GLU GLU LEU GLU SEQRES 22 B 283 THR LEU TRP LEU THR GLY ILE CYS HIS ASN HET QGM A 301 25 HET GLU B 301 10 HETNAM QGM (2R,4S)-5,7-DICHLORO-4-[(PHENYLCARBAMOYL)AMINO]-1,2,3, HETNAM 2 QGM 4-TETRAHYDROQUINOLINE-2-CARBOXYLIC ACID HETNAM GLU GLUTAMIC ACID FORMUL 3 QGM C17 H15 CL2 N3 O3 FORMUL 4 GLU C5 H9 N O4 FORMUL 5 HOH *249(H2 O) HELIX 1 AA1 GLY A 65 ASN A 79 1 15 HELIX 2 AA2 ASN A 107 SER A 115 1 9 HELIX 3 AA3 ASN A 128 GLN A 133 1 6 HELIX 4 AA4 ASP A 161 ASN A 166 1 6 HELIX 5 AA5 SER A 179 GLN A 188 1 10 HELIX 6 AA6 LEU A 191 LYS A 200 1 10 HELIX 7 AA7 SER A 205 ASP A 215 1 11 HELIX 8 AA8 SER A 225 ALA A 232 1 8 HELIX 9 AA9 TRP A 260 ASN A 274 1 15 HELIX 10 AB1 GLY A 275 VAL A 285 1 11 HELIX 11 AB2 GLY B 61 LYS B 75 1 15 HELIX 12 AB3 ASN B 97 TYR B 105 1 9 HELIX 13 AB4 ASN B 118 VAL B 125 1 8 HELIX 14 AB5 ASP B 151 ARG B 156 1 6 HELIX 15 AB6 PRO B 157 TYR B 160 5 4 HELIX 16 AB7 GLY B 172 TYR B 182 1 11 HELIX 17 AB8 TYR B 182 THR B 190 1 9 HELIX 18 AB9 ARG B 191 ASN B 193 5 3 HELIX 19 AC1 GLY B 196 THR B 206 1 11 HELIX 20 AC2 ALA B 216 ASP B 226 1 11 HELIX 21 AC3 ILE B 234 TYR B 238 1 5 HELIX 22 AC4 TRP B 255 ASP B 269 1 15 HELIX 23 AC5 GLY B 270 THR B 281 1 12 SHEET 1 AA1 6 TYR A 18 PRO A 21 0 SHEET 2 AA1 6 THR A 58 TYR A 64 -1 O TYR A 64 N TYR A 18 SHEET 3 AA1 6 VAL A 42 PRO A 47 -1 N CYS A 44 O GLN A 61 SHEET 4 AA1 6 TYR A 82 LEU A 86 1 O LEU A 86 N THR A 45 SHEET 5 AA1 6 LEU A 6 THR A 10 1 N ILE A 8 O GLU A 83 SHEET 6 AA1 6 MET A 120 ILE A 121 1 O MET A 120 N VAL A 9 SHEET 1 AA2 2 GLN A 95 GLU A 96 0 SHEET 2 AA2 2 GLU A 105 TRP A 106 -1 O GLU A 105 N GLU A 96 SHEET 1 AA3 2 GLU A 136 PHE A 137 0 SHEET 2 AA3 2 GLY A 253 MET A 254 -1 O MET A 254 N GLU A 136 SHEET 1 AA4 4 TYR A 173 ALA A 174 0 SHEET 2 AA4 4 ALA A 220 ASP A 224 1 O ILE A 222 N ALA A 174 SHEET 3 AA4 4 LYS A 142 LYS A 151 -1 N THR A 147 O TRP A 223 SHEET 4 AA4 4 LEU A 238 PHE A 250 -1 O VAL A 239 N VAL A 150 SHEET 1 AA5 5 THR B 77 LEU B 82 0 SHEET 2 AA5 5 HIS B 8 THR B 13 1 N LEU B 9 O THR B 77 SHEET 3 AA5 5 MET B 110 ALA B 111 1 O MET B 110 N VAL B 12 SHEET 4 AA5 5 ALA B 248 LEU B 249 -1 O ALA B 248 N ALA B 111 SHEET 5 AA5 5 ASP B 126 PHE B 127 -1 N ASP B 126 O LEU B 249 SHEET 1 AA6 3 ILE B 21 ASP B 24 0 SHEET 2 AA6 3 GLY B 52 LYS B 60 -1 O LYS B 60 N ILE B 21 SHEET 3 AA6 3 VAL B 37 LYS B 44 -1 N LYS B 41 O VAL B 55 SHEET 1 AA7 2 LYS B 91 VAL B 92 0 SHEET 2 AA7 2 VAL B 95 TRP B 96 -1 O VAL B 95 N VAL B 92 SHEET 1 AA8 4 PHE B 166 GLY B 167 0 SHEET 2 AA8 4 ALA B 211 ASP B 215 1 O ILE B 213 N GLY B 167 SHEET 3 AA8 4 VAL B 132 SER B 141 -1 N MET B 139 O PHE B 212 SHEET 4 AA8 4 LEU B 231 THR B 233 -1 O VAL B 232 N VAL B 140 SHEET 1 AA9 4 PHE B 166 GLY B 167 0 SHEET 2 AA9 4 ALA B 211 ASP B 215 1 O ILE B 213 N GLY B 167 SHEET 3 AA9 4 VAL B 132 SER B 141 -1 N MET B 139 O PHE B 212 SHEET 4 AA9 4 PHE B 240 TYR B 245 -1 O THR B 243 N THR B 134 SSBOND 1 CYS A 28 CYS A 62 1555 1555 2.07 SSBOND 2 CYS A 44 CYS A 63 1555 1555 2.05 SSBOND 3 CYS B 32 CYS B 58 1555 1555 2.08 SSBOND 4 CYS B 39 CYS B 59 1555 1555 2.06 SSBOND 5 CYS B 229 CYS B 284 1555 1555 2.05 CISPEP 1 GLU A 14 PRO A 15 0 5.82 CISPEP 2 ALA B 17 PRO B 18 0 0.98 CISPEP 3 SER B 161 PRO B 162 0 -2.61 SITE 1 AC1 14 GLN A 13 PHE A 16 PHE A 92 PRO A 124 SITE 2 AC1 14 THR A 126 ARG A 131 SER A 179 SER A 180 SITE 3 AC1 14 TRP A 223 ASP A 224 HOH A 412 HOH A 417 SITE 4 AC1 14 HOH A 482 HOH A 506 SITE 1 AC2 11 HIS B 88 SER B 114 THR B 116 ARG B 121 SITE 2 AC2 11 GLY B 172 SER B 173 THR B 174 TYR B 214 SITE 3 AC2 11 ASP B 215 HOH B 440 HOH B 450 CRYST1 54.040 87.341 136.987 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018505 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011449 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007300 0.00000