HEADER CYTOSOLIC PROTEIN 29-OCT-19 6UTN TITLE NATIVE E. COLI GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.2.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: GAPA, ACN002_1253; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS G3P, GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE, E. COLI, CYTOSOLIC KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.RODRIGUEZ-HERNANDEZ,E.ROMO-AREVALO,A.RODRIGUEZ-ROMERO REVDAT 2 29-JUL-20 6UTN 1 COMPND REMARK HET HETNAM REVDAT 2 2 1 HETSYN FORMUL LINK SITE REVDAT 2 3 1 ATOM REVDAT 1 11-DEC-19 6UTN 0 JRNL AUTH A.RODRIGUEZ-HERNANDEZ,E.ROMO-AREVALO,A.RODRIGUEZ-ROMERO JRNL TITL A NOVEL SUBSTRATE-BINDING SITE IN THE X-RAY STRUCTURE OF AN JRNL TITL 2 OXIDIZED E. COLI GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE JRNL TITL 3 ELUCIDATED BY SINGLE-WAVELENGTH ANOMALOUS DISPERSION JRNL REF CRYSTALS V. 9 622 2019 JRNL REFN ESSN 2073-4352 JRNL DOI 10.3390/CRYST9120622 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.V.AFONINE,R.W.GROSSE-KUNSTLEVE,N.ECHOLS,J.J.HEADD, REMARK 1 AUTH 2 N.W.MORIARTY,M.MUSTYAKIMOV,T.C.TERWILLIGER,A.URZHUMTSEV, REMARK 1 AUTH 3 P.H.ZWART,P.D.ADAMS REMARK 1 TITL TOWARDS AUTOMATED CRYSTALLOGRAPHIC STRUCTURE REFINEMENT WITH REMARK 1 TITL 2 PHENIX.REFINE. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 68 352 2012 REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 22505256 REMARK 1 DOI 10.1107/S0907444912001308 REMARK 1 REFERENCE 2 REMARK 1 AUTH P.D.ADAMS,P.V.AFONINE,G.BUNKOCZI,V.B.CHEN,I.W.DAVIS, REMARK 1 AUTH 2 N.ECHOLS,J.J.HEADD,L.W.HUNG,G.J.KAPRAL,R.W.GROSSE-KUNSTLEVE, REMARK 1 AUTH 3 A.J.MCCOY,N.W.MORIARTY,R.OEFFNER,R.J.READ,D.C.RICHARDSON, REMARK 1 AUTH 4 J.S.RICHARDSON,T.C.TERWILLIGER,P.H.ZWART REMARK 1 TITL PHENIX: A COMPREHENSIVE PYTHON-BASED SYSTEM FOR REMARK 1 TITL 2 MACROMOLECULAR STRUCTURE SOLUTION. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 66 213 2010 REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 20124702 REMARK 1 DOI 10.1107/S0907444909052925 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 83405 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.080 REMARK 3 FREE R VALUE TEST SET COUNT : 904 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 4.8600 - 3.2500 1.00 14153 155 0.1507 0.1468 REMARK 3 2 3.2500 - 2.5800 1.00 13780 152 0.1855 0.2042 REMARK 3 3 2.5800 - 2.2600 1.00 13721 149 0.1830 0.2406 REMARK 3 4 2.2600 - 2.0500 1.00 13699 151 0.1853 0.2067 REMARK 3 5 2.0500 - 1.9000 1.00 13638 149 0.1980 0.2293 REMARK 3 6 1.9000 - 1.7900 0.99 13510 148 0.2404 0.3202 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.208 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.768 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 5139 REMARK 3 ANGLE : 1.324 6998 REMARK 3 CHIRALITY : 0.085 842 REMARK 3 PLANARITY : 0.009 894 REMARK 3 DIHEDRAL : 16.843 1870 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 13.5903 62.4994 86.5210 REMARK 3 T TENSOR REMARK 3 T11: 0.0732 T22: 0.1270 REMARK 3 T33: 0.1297 T12: 0.0019 REMARK 3 T13: 0.0021 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 0.2107 L22: 0.2406 REMARK 3 L33: 0.9180 L12: -0.0752 REMARK 3 L13: 0.1400 L23: -0.1414 REMARK 3 S TENSOR REMARK 3 S11: 0.0070 S12: 0.0192 S13: 0.0189 REMARK 3 S21: -0.0136 S22: -0.0489 S23: -0.0765 REMARK 3 S31: 0.0037 S32: 0.1341 S33: 0.0412 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 1 THROUGH 22 OR REMARK 3 RESID 24 THROUGH 69 OR (RESID 70 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 72 THROUGH 76 OR REMARK 3 (RESID 77 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 78 REMARK 3 THROUGH 113 OR (RESID 114 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 115 THROUGH 159 OR RESID 161 REMARK 3 THROUGH 182 OR RESID 184 THROUGH 187 OR REMARK 3 RESID 189 THROUGH 205 OR RESID 208 REMARK 3 THROUGH 227 OR RESID 229 THROUGH 247 OR REMARK 3 RESID 249 THROUGH 266 OR (RESID 267 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 268 THROUGH 286 OR REMARK 3 RESID 288 THROUGH 304 OR RESID 306 REMARK 3 THROUGH 330 OR RESID 501)) REMARK 3 SELECTION : (CHAIN 'B' AND (RESID 1 THROUGH 22 OR REMARK 3 RESID 24 THROUGH 57 OR (RESID 58 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB )) OR RESID 59 THROUGH 60 OR REMARK 3 (RESID 61 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 62 REMARK 3 THROUGH 70 OR RESID 72 THROUGH 159 OR REMARK 3 RESID 161 THROUGH 182 OR RESID 184 REMARK 3 THROUGH 187 OR RESID 189 THROUGH 190 OR REMARK 3 (RESID 191 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB OR NAME CG )) OR REMARK 3 RESID 192 THROUGH 205 OR RESID 208 REMARK 3 THROUGH 215 OR (RESID 216 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 217 THROUGH 227 OR RESID 229 REMARK 3 THROUGH 247 OR RESID 249 THROUGH 286 OR REMARK 3 RESID 288 THROUGH 304 OR RESID 306 REMARK 3 THROUGH 330 OR RESID 501)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UTN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1000245195. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 200K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 746389 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 38.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5.5 MG/ML PROTEIN, 0.1 M HEPES PH 7.5 REMARK 280 AND 1.43 M SODIUM CITRATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.83650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.83650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.83650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 93.67650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 38.83650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 93.67650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 60.83650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 38.83650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 93.67650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 60.83650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 38.83650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 93.67650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -142.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 182.50950 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 707 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 767 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 775 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 725 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 22 CG CD CE NZ REMARK 470 GLU A 58 CG CD OE1 OE2 REMARK 470 ASP A 61 CG OD1 OD2 REMARK 470 LYS A 69 CG CD CE NZ REMARK 470 LYS A 191 CD CE NZ REMARK 470 LYS A 216 CG CD CE NZ REMARK 470 GLU A 266 CG CD OE1 OE2 REMARK 470 LYS B 22 CG CD CE NZ REMARK 470 LYS B 69 CG CD CE NZ REMARK 470 LYS B 70 CG CD CE NZ REMARK 470 ARG B 77 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 114 CG CD CE NZ REMARK 470 GLU B 266 CG CD OE1 OE2 REMARK 470 MSE B 267 CG SE CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 128 CG - SE - CE ANGL. DEV. = 14.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 119 37.89 -90.55 REMARK 500 ASP A 124 -156.35 -112.09 REMARK 500 ALA A 133 -53.89 -128.76 REMARK 500 ASN A 134 25.53 -154.58 REMARK 500 ALA A 147 -148.45 62.42 REMARK 500 SER A 189 71.60 -152.10 REMARK 500 ASP A 192 84.78 -154.60 REMARK 500 VAL A 237 135.44 87.35 REMARK 500 PHE B 9 47.51 -105.88 REMARK 500 THR B 119 38.55 -88.35 REMARK 500 ASP B 124 -152.64 -112.00 REMARK 500 ASN B 134 24.46 -148.91 REMARK 500 ALA B 147 -148.72 59.17 REMARK 500 SER B 189 68.65 -151.68 REMARK 500 ASP B 192 84.29 -155.48 REMARK 500 VAL B 237 134.10 84.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 770 DISTANCE = 6.10 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 20 O REMARK 620 2 ARG A 23 O 89.9 REMARK 620 3 ILE A 26 O 101.1 93.4 REMARK 620 4 HOH A 580 O 100.4 64.5 149.0 REMARK 620 5 HOH A 708 O 172.9 83.1 80.5 75.5 REMARK 620 6 HOH A 739 O 102.8 150.4 109.8 86.7 83.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 20 O REMARK 620 2 ARG B 23 O 84.6 REMARK 620 3 ILE B 26 O 101.2 90.5 REMARK 620 4 HOH B 670 O 101.5 66.2 145.5 REMARK 620 5 HOH B 712 O 168.6 84.0 78.9 73.8 REMARK 620 6 HOH B 741 O 110.5 147.3 113.5 82.1 79.5 REMARK 620 N 1 2 3 4 5 DBREF1 6UTN A 1 330 UNP A0A0U4BD45_ECOLX DBREF2 6UTN A A0A0U4BD45 5 334 DBREF1 6UTN B 1 330 UNP A0A0U4BD45_ECOLX DBREF2 6UTN B A0A0U4BD45 5 334 SEQRES 1 A 330 THR ILE LYS VAL GLY ILE ASN GLY PHE GLY ARG ILE GLY SEQRES 2 A 330 ARG ILE VAL PHE ARG ALA ALA GLN LYS ARG SER ASP ILE SEQRES 3 A 330 GLU ILE VAL ALA ILE ASN ASP LEU LEU ASP ALA ASP TYR SEQRES 4 A 330 MSE ALA TYR MSE LEU LYS TYR ASP SER THR HIS GLY ARG SEQRES 5 A 330 PHE ASP GLY THR VAL GLU VAL LYS ASP GLY HIS LEU ILE SEQRES 6 A 330 VAL ASN GLY LYS LYS ILE ARG VAL THR ALA GLU ARG ASP SEQRES 7 A 330 PRO ALA ASN LEU LYS TRP ASP GLU VAL GLY VAL ASP VAL SEQRES 8 A 330 VAL ALA GLU ALA THR GLY LEU PHE LEU THR ASP GLU THR SEQRES 9 A 330 ALA ARG LYS HIS ILE THR ALA GLY ALA LYS LYS VAL VAL SEQRES 10 A 330 MSE THR GLY PRO SER LYS ASP ASN THR PRO MSE PHE VAL SEQRES 11 A 330 LYS GLY ALA ASN PHE ASP LYS TYR ALA GLY GLN ASP ILE SEQRES 12 A 330 VAL SER ASN ALA SER CSD THR THR ASN CYS LEU ALA PRO SEQRES 13 A 330 LEU ALA LYS VAL ILE ASN ASP ASN PHE GLY ILE ILE GLU SEQRES 14 A 330 GLY LEU MSE THR THR VAL HIS ALA THR THR ALA THR GLN SEQRES 15 A 330 LYS THR VAL ASP GLY PRO SER HIS LYS ASP TRP ARG GLY SEQRES 16 A 330 GLY ARG GLY ALA SER GLN ASN ILE ILE PRO SER SER THR SEQRES 17 A 330 GLY ALA ALA LYS ALA VAL GLY LYS VAL LEU PRO GLU LEU SEQRES 18 A 330 ASN GLY LYS LEU THR GLY MSE ALA PHE ARG VAL PRO THR SEQRES 19 A 330 PRO ASN VAL SER VAL VAL ASP LEU THR VAL ARG LEU GLU SEQRES 20 A 330 LYS ALA ALA THR TYR GLU GLN ILE LYS ALA ALA VAL LYS SEQRES 21 A 330 ALA ALA ALA GLU GLY GLU MSE LYS GLY VAL LEU GLY TYR SEQRES 22 A 330 THR GLU ASP ASP VAL VAL SER THR ASP PHE ASN GLY GLU SEQRES 23 A 330 VAL CYS THR SER VAL PHE ASP ALA LYS ALA GLY ILE ALA SEQRES 24 A 330 LEU ASN ASP ASN PHE VAL LYS LEU VAL SER TRP TYR ASP SEQRES 25 A 330 ASN GLU THR GLY TYR SER ASN LYS VAL LEU ASP LEU ILE SEQRES 26 A 330 ALA HIS ILE SER LYS SEQRES 1 B 330 THR ILE LYS VAL GLY ILE ASN GLY PHE GLY ARG ILE GLY SEQRES 2 B 330 ARG ILE VAL PHE ARG ALA ALA GLN LYS ARG SER ASP ILE SEQRES 3 B 330 GLU ILE VAL ALA ILE ASN ASP LEU LEU ASP ALA ASP TYR SEQRES 4 B 330 MSE ALA TYR MSE LEU LYS TYR ASP SER THR HIS GLY ARG SEQRES 5 B 330 PHE ASP GLY THR VAL GLU VAL LYS ASP GLY HIS LEU ILE SEQRES 6 B 330 VAL ASN GLY LYS LYS ILE ARG VAL THR ALA GLU ARG ASP SEQRES 7 B 330 PRO ALA ASN LEU LYS TRP ASP GLU VAL GLY VAL ASP VAL SEQRES 8 B 330 VAL ALA GLU ALA THR GLY LEU PHE LEU THR ASP GLU THR SEQRES 9 B 330 ALA ARG LYS HIS ILE THR ALA GLY ALA LYS LYS VAL VAL SEQRES 10 B 330 MSE THR GLY PRO SER LYS ASP ASN THR PRO MSE PHE VAL SEQRES 11 B 330 LYS GLY ALA ASN PHE ASP LYS TYR ALA GLY GLN ASP ILE SEQRES 12 B 330 VAL SER ASN ALA SER CSD THR THR ASN CYS LEU ALA PRO SEQRES 13 B 330 LEU ALA LYS VAL ILE ASN ASP ASN PHE GLY ILE ILE GLU SEQRES 14 B 330 GLY LEU MSE THR THR VAL HIS ALA THR THR ALA THR GLN SEQRES 15 B 330 LYS THR VAL ASP GLY PRO SER HIS LYS ASP TRP ARG GLY SEQRES 16 B 330 GLY ARG GLY ALA SER GLN ASN ILE ILE PRO SER SER THR SEQRES 17 B 330 GLY ALA ALA LYS ALA VAL GLY LYS VAL LEU PRO GLU LEU SEQRES 18 B 330 ASN GLY LYS LEU THR GLY MSE ALA PHE ARG VAL PRO THR SEQRES 19 B 330 PRO ASN VAL SER VAL VAL ASP LEU THR VAL ARG LEU GLU SEQRES 20 B 330 LYS ALA ALA THR TYR GLU GLN ILE LYS ALA ALA VAL LYS SEQRES 21 B 330 ALA ALA ALA GLU GLY GLU MSE LYS GLY VAL LEU GLY TYR SEQRES 22 B 330 THR GLU ASP ASP VAL VAL SER THR ASP PHE ASN GLY GLU SEQRES 23 B 330 VAL CYS THR SER VAL PHE ASP ALA LYS ALA GLY ILE ALA SEQRES 24 B 330 LEU ASN ASP ASN PHE VAL LYS LEU VAL SER TRP TYR ASP SEQRES 25 B 330 ASN GLU THR GLY TYR SER ASN LYS VAL LEU ASP LEU ILE SEQRES 26 B 330 ALA HIS ILE SER LYS MODRES 6UTN MSE A 40 MET MODIFIED RESIDUE MODRES 6UTN MSE A 43 MET MODIFIED RESIDUE MODRES 6UTN MSE A 118 MET MODIFIED RESIDUE MODRES 6UTN MSE A 128 MET MODIFIED RESIDUE MODRES 6UTN CSD A 149 CYS MODIFIED RESIDUE MODRES 6UTN MSE A 172 MET MODIFIED RESIDUE MODRES 6UTN MSE A 228 MET MODIFIED RESIDUE MODRES 6UTN MSE A 267 MET MODIFIED RESIDUE MODRES 6UTN MSE B 40 MET MODIFIED RESIDUE MODRES 6UTN MSE B 43 MET MODIFIED RESIDUE MODRES 6UTN MSE B 118 MET MODIFIED RESIDUE MODRES 6UTN MSE B 128 MET MODIFIED RESIDUE MODRES 6UTN CSD B 149 CYS MODIFIED RESIDUE MODRES 6UTN MSE B 172 MET MODIFIED RESIDUE MODRES 6UTN MSE B 228 MET MODIFIED RESIDUE MODRES 6UTN MSE B 267 MET MODIFIED RESIDUE HET MSE A 40 8 HET MSE A 43 8 HET MSE A 118 8 HET MSE A 128 8 HET CSD A 149 8 HET MSE A 172 8 HET MSE A 228 13 HET MSE A 267 8 HET MSE B 40 8 HET MSE B 43 8 HET MSE B 118 8 HET MSE B 128 8 HET CSD B 149 8 HET MSE B 172 8 HET MSE B 228 8 HET MSE B 267 5 HET GLC C 1 11 HET GLC C 2 12 HET GLC D 1 11 HET GLC D 2 12 HET G3P A 401 10 HET ACT A 403 4 HET NA A 404 1 HET ACT B 401 4 HET NA B 403 1 HET PO4 B 404 5 HETNAM MSE SELENOMETHIONINE HETNAM CSD 3-SULFINOALANINE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM G3P SN-GLYCEROL-3-PHOSPHATE HETNAM ACT ACETATE ION HETNAM NA SODIUM ION HETNAM PO4 PHOSPHATE ION HETSYN CSD S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 1 CSD 2(C3 H7 N O4 S) FORMUL 3 GLC 4(C6 H12 O6) FORMUL 5 G3P C3 H9 O6 P FORMUL 6 ACT 2(C2 H3 O2 1-) FORMUL 7 NA 2(NA 1+) FORMUL 10 PO4 O4 P 3- FORMUL 11 HOH *546(H2 O) HELIX 1 AA1 GLY A 10 LYS A 22 1 13 HELIX 2 AA2 ASP A 36 TYR A 46 1 11 HELIX 3 AA3 ASP A 78 LEU A 82 5 5 HELIX 4 AA4 LYS A 83 GLY A 88 5 6 HELIX 5 AA5 THR A 101 ARG A 106 1 6 HELIX 6 AA6 ARG A 106 ALA A 111 1 6 HELIX 7 AA7 ASN A 134 TYR A 138 5 5 HELIX 8 AA8 SER A 148 GLY A 166 1 19 HELIX 9 AA9 TRP A 193 ARG A 197 5 5 HELIX 10 AB1 GLY A 209 LEU A 218 1 10 HELIX 11 AB2 PRO A 219 ASN A 222 5 4 HELIX 12 AB3 THR A 251 GLY A 265 1 15 HELIX 13 AB4 VAL A 279 ASN A 284 5 6 HELIX 14 AB5 GLU A 314 LYS A 330 1 17 HELIX 15 AB6 GLY B 10 LYS B 22 1 13 HELIX 16 AB7 ASP B 36 TYR B 46 1 11 HELIX 17 AB8 ASP B 78 LEU B 82 5 5 HELIX 18 AB9 LYS B 83 GLY B 88 5 6 HELIX 19 AC1 THR B 101 ARG B 106 1 6 HELIX 20 AC2 ARG B 106 ALA B 111 1 6 HELIX 21 AC3 ASN B 134 TYR B 138 5 5 HELIX 22 AC4 SER B 148 GLY B 166 1 19 HELIX 23 AC5 TRP B 193 ARG B 197 5 5 HELIX 24 AC6 GLY B 198 ASN B 202 5 5 HELIX 25 AC7 ALA B 213 LEU B 218 1 6 HELIX 26 AC8 PRO B 219 ASN B 222 5 4 HELIX 27 AC9 THR B 251 GLY B 265 1 15 HELIX 28 AD1 VAL B 279 ASN B 284 5 6 HELIX 29 AD2 GLU B 314 LYS B 330 1 17 SHEET 1 AA1 8 VAL A 57 LYS A 60 0 SHEET 2 AA1 8 HIS A 63 VAL A 66 -1 O ILE A 65 N GLU A 58 SHEET 3 AA1 8 LYS A 69 THR A 74 -1 O ILE A 71 N LEU A 64 SHEET 4 AA1 8 ILE A 26 ASN A 32 1 N ILE A 31 O ARG A 72 SHEET 5 AA1 8 ILE A 2 ASN A 7 1 N ILE A 6 O ASN A 32 SHEET 6 AA1 8 VAL A 91 GLU A 94 1 O ALA A 93 N GLY A 5 SHEET 7 AA1 8 LYS A 115 MSE A 118 1 O VAL A 117 N VAL A 92 SHEET 8 AA1 8 ILE A 143 SER A 145 1 O VAL A 144 N MSE A 118 SHEET 1 AA2 7 ILE A 204 SER A 207 0 SHEET 2 AA2 7 LEU A 225 VAL A 232 -1 O ARG A 231 N ILE A 204 SHEET 3 AA2 7 ILE A 167 ALA A 177 1 N HIS A 176 O PHE A 230 SHEET 4 AA2 7 SER A 238 LEU A 246 -1 O ARG A 245 N ILE A 168 SHEET 5 AA2 7 PHE A 304 TYR A 311 -1 O SER A 309 N VAL A 240 SHEET 6 AA2 7 SER A 290 ASP A 293 -1 N ASP A 293 O VAL A 308 SHEET 7 AA2 7 LEU A 271 THR A 274 1 N GLY A 272 O SER A 290 SHEET 1 AA3 6 ILE A 204 SER A 207 0 SHEET 2 AA3 6 LEU A 225 VAL A 232 -1 O ARG A 231 N ILE A 204 SHEET 3 AA3 6 ILE A 167 ALA A 177 1 N HIS A 176 O PHE A 230 SHEET 4 AA3 6 SER A 238 LEU A 246 -1 O ARG A 245 N ILE A 168 SHEET 5 AA3 6 PHE A 304 TYR A 311 -1 O SER A 309 N VAL A 240 SHEET 6 AA3 6 ILE A 298 ASN A 301 -1 N ILE A 298 O LYS A 306 SHEET 1 AA4 8 VAL B 57 LYS B 60 0 SHEET 2 AA4 8 HIS B 63 VAL B 66 -1 O ILE B 65 N GLU B 58 SHEET 3 AA4 8 LYS B 69 THR B 74 -1 O ILE B 71 N LEU B 64 SHEET 4 AA4 8 ILE B 26 ASN B 32 1 N ILE B 31 O ARG B 72 SHEET 5 AA4 8 ILE B 2 ASN B 7 1 N VAL B 4 O GLU B 27 SHEET 6 AA4 8 VAL B 91 GLU B 94 1 O ALA B 93 N GLY B 5 SHEET 7 AA4 8 LYS B 115 MSE B 118 1 O VAL B 117 N VAL B 92 SHEET 8 AA4 8 ILE B 143 SER B 145 1 O VAL B 144 N MSE B 118 SHEET 1 AA5 7 ILE B 204 SER B 207 0 SHEET 2 AA5 7 LEU B 225 VAL B 232 -1 O ARG B 231 N ILE B 204 SHEET 3 AA5 7 ILE B 167 ALA B 177 1 N HIS B 176 O PHE B 230 SHEET 4 AA5 7 SER B 238 LEU B 246 -1 O ASP B 241 N THR B 173 SHEET 5 AA5 7 PHE B 304 TYR B 311 -1 O SER B 309 N VAL B 240 SHEET 6 AA5 7 SER B 290 ASP B 293 -1 N ASP B 293 O VAL B 308 SHEET 7 AA5 7 LEU B 271 THR B 274 1 N GLY B 272 O SER B 290 SHEET 1 AA6 6 ILE B 204 SER B 207 0 SHEET 2 AA6 6 LEU B 225 VAL B 232 -1 O ARG B 231 N ILE B 204 SHEET 3 AA6 6 ILE B 167 ALA B 177 1 N HIS B 176 O PHE B 230 SHEET 4 AA6 6 SER B 238 LEU B 246 -1 O ASP B 241 N THR B 173 SHEET 5 AA6 6 PHE B 304 TYR B 311 -1 O SER B 309 N VAL B 240 SHEET 6 AA6 6 ILE B 298 ASN B 301 -1 N ILE B 298 O LYS B 306 LINK C TYR A 39 N MSE A 40 1555 1555 1.34 LINK C MSE A 40 N ALA A 41 1555 1555 1.34 LINK C TYR A 42 N MSE A 43 1555 1555 1.33 LINK C MSE A 43 N LEU A 44 1555 1555 1.33 LINK C VAL A 117 N MSE A 118 1555 1555 1.34 LINK C MSE A 118 N THR A 119 1555 1555 1.34 LINK C PRO A 127 N MSE A 128 1555 1555 1.33 LINK C MSE A 128 N PHE A 129 1555 1555 1.32 LINK C SER A 148 N CSD A 149 1555 1555 1.34 LINK C CSD A 149 N THR A 150 1555 1555 1.34 LINK C LEU A 171 N MSE A 172 1555 1555 1.43 LINK C MSE A 172 N THR A 173 1555 1555 1.27 LINK C GLY A 227 N MSE A 228 1555 1555 1.33 LINK C MSE A 228 N ALA A 229 1555 1555 1.32 LINK C GLU A 266 N MSE A 267 1555 1555 1.33 LINK C MSE A 267 N LYS A 268 1555 1555 1.35 LINK C TYR B 39 N MSE B 40 1555 1555 1.33 LINK C MSE B 40 N ALA B 41 1555 1555 1.32 LINK C TYR B 42 N MSE B 43 1555 1555 1.33 LINK C MSE B 43 N LEU B 44 1555 1555 1.33 LINK C VAL B 117 N MSE B 118 1555 1555 1.33 LINK C MSE B 118 N THR B 119 1555 1555 1.32 LINK C PRO B 127 N MSE B 128 1555 1555 1.33 LINK C MSE B 128 N PHE B 129 1555 1555 1.32 LINK C SER B 148 N CSD B 149 1555 1555 1.32 LINK C CSD B 149 N THR B 150 1555 1555 1.36 LINK C LEU B 171 N MSE B 172 1555 1555 1.34 LINK C MSE B 172 N THR B 173 1555 1555 1.33 LINK C GLY B 227 N MSE B 228 1555 1555 1.33 LINK C MSE B 228 N ALA B 229 1555 1555 1.33 LINK C GLU B 266 N MSE B 267 1555 1555 1.32 LINK C MSE B 267 N LYS B 268 1555 1555 1.33 LINK C1 GLC C 1 O1 GLC C 2 1555 1555 1.40 LINK C1 GLC D 1 O1 GLC D 2 1555 1555 1.43 LINK O ALA A 20 NA NA A 404 1555 1555 2.45 LINK O ARG A 23 NA NA A 404 1555 1555 2.30 LINK O ILE A 26 NA NA A 404 1555 1555 2.28 LINK NA NA A 404 O HOH A 580 1555 1555 2.80 LINK NA NA A 404 O HOH A 708 1555 1555 2.57 LINK NA NA A 404 O HOH A 739 1555 1555 2.28 LINK O ALA B 20 NA NA B 403 1555 1555 2.44 LINK O ARG B 23 NA NA B 403 1555 1555 2.29 LINK O ILE B 26 NA NA B 403 1555 1555 2.31 LINK NA NA B 403 O HOH B 670 1555 1555 2.97 LINK NA NA B 403 O HOH B 712 1555 1555 2.66 LINK NA NA B 403 O HOH B 741 1555 1555 2.31 CRYST1 77.673 187.353 121.673 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012874 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005338 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008219 0.00000