HEADER RNA BINDING PROTEIN/RNA 01-NOV-19 6UV2 TITLE CRYSTAL STRUCTURE OF THE CORE DOMAIN OF RNA HELICASE DDX17 WITH RNA TITLE 2 PRI-125A-OLIGO1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE ATP-DEPENDENT RNA HELICASE DDX17; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DEAD BOX PROTEIN 17,DEAD BOX PROTEIN P72,DEAD BOX PROTEIN COMPND 5 P82,RNA-DEPENDENT HELICASE P72; COMPND 6 EC: 3.6.4.13; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: RNA 125A_OLIGO1; COMPND 10 CHAIN: C; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DDX17; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS DEAD-BOX ATPASE, RNA HELICASE, RNA BINDING, RNA BINDING PROTEIN, RNA KEYWDS 2 BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.D.NGO,A.C.PARTIN,Y.NAM REVDAT 4 03-APR-24 6UV2 1 REMARK REVDAT 3 06-MAR-24 6UV2 1 LINK REVDAT 2 15-JAN-20 6UV2 1 TITLE REVDAT 1 01-JAN-20 6UV2 0 JRNL AUTH T.D.NGO,A.C.PARTIN,Y.NAM JRNL TITL RNA SPECIFICITY AND AUTOREGULATION OF DDX17, A MODULATOR OF JRNL TITL 2 MICRORNA BIOGENESIS. JRNL REF CELL REP V. 29 4024 2019 JRNL REFN ESSN 2211-1247 JRNL PMID 31851931 JRNL DOI 10.1016/J.CELREP.2019.11.059 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 58292 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.440 REMARK 3 FREE R VALUE TEST SET COUNT : 2005 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.8100 - 4.5625 1.00 4208 152 0.1722 0.1901 REMARK 3 2 4.5625 - 3.6217 1.00 4083 147 0.1507 0.1650 REMARK 3 3 3.6217 - 3.1640 1.00 4061 144 0.1684 0.1922 REMARK 3 4 3.1640 - 2.8748 1.00 4024 143 0.1811 0.1903 REMARK 3 5 2.8748 - 2.6687 1.00 4014 141 0.1754 0.1884 REMARK 3 6 2.6687 - 2.5114 1.00 3993 141 0.1773 0.2004 REMARK 3 7 2.5114 - 2.3856 1.00 4004 137 0.1762 0.2142 REMARK 3 8 2.3856 - 2.2818 1.00 4000 144 0.1763 0.2322 REMARK 3 9 2.2818 - 2.1939 1.00 3998 144 0.1733 0.2014 REMARK 3 10 2.1939 - 2.1182 1.00 3969 141 0.1660 0.1756 REMARK 3 11 2.1182 - 2.0520 1.00 3985 139 0.1637 0.1847 REMARK 3 12 2.0520 - 1.9933 1.00 3991 144 0.1664 0.1740 REMARK 3 13 1.9933 - 1.9409 1.00 3974 146 0.1755 0.1982 REMARK 3 14 1.9409 - 1.8940 1.00 3983 142 0.2043 0.2924 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UV2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1000244679. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97937 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58330 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 19.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 55.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: DDX17-RU10 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 40% PEG200, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.14200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 66.28400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 66.28400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 33.14200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 693 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 829 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 935 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 30 REMARK 465 GLY A 31 REMARK 465 GLY A 32 REMARK 465 ASN A 33 REMARK 465 PRO A 34 REMARK 465 GLY A 35 REMARK 465 GLU A 36 REMARK 465 ARG A 37 REMARK 465 LEU A 38 REMARK 465 ARG A 39 REMARK 465 LYS A 40 REMARK 465 LYS A 41 REMARK 465 LYS A 42 REMARK 465 ASP A 474 REMARK 465 HIS A 475 REMARK 465 ARG A 476 REMARK 465 GLY A 477 REMARK 465 C C 0 REMARK 465 A C 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 44 CG OD1 OD2 REMARK 470 LEU A 45 CG CD1 CD2 REMARK 470 SER A 46 OG REMARK 470 GLU A 47 CG CD OE1 OE2 REMARK 470 C C 2 P OP1 OP2 O5' REMARK 470 G C 9 C5' C4' O4' C3' O3' C2' O2' REMARK 470 G C 9 C1' N9 C8 N7 C5 C6 O6 REMARK 470 G C 9 N1 C2 N2 N3 C4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 468 O HOH A 601 1.93 REMARK 500 O HOH A 895 O HOH A 896 2.12 REMARK 500 O HOH A 898 O HOH A 902 2.15 REMARK 500 O HOH A 941 O HOH A 945 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 192 -175.63 -66.96 REMARK 500 ARG A 193 55.63 -107.49 REMARK 500 ASP A 397 0.60 -67.85 REMARK 500 SER A 433 -125.09 53.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 943 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A 944 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A 945 DISTANCE = 6.39 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 505 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 129 O REMARK 620 2 ASP A 131 OD1 118.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 506 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 302 O REMARK 620 2 GLU A 304 O 84.5 REMARK 620 3 SER A 306 OG 107.0 97.9 REMARK 620 4 HOH A 775 O 159.0 93.7 94.0 REMARK 620 5 HOH A 776 O 80.8 95.0 165.5 78.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BEF A 502 BE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 501 O3B REMARK 620 2 BEF A 502 F1 119.4 REMARK 620 3 BEF A 502 F2 104.8 106.6 REMARK 620 4 BEF A 502 F3 112.9 106.5 105.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 501 O1B REMARK 620 2 HOH A 697 O 89.2 REMARK 620 3 HOH A 726 O 87.8 97.1 REMARK 620 4 HOH A 735 O 173.5 85.5 89.2 REMARK 620 5 HOH A 736 O 99.6 86.2 172.0 83.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEF A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 506 DBREF 6UV2 A 32 477 UNP Q92841 DDX17_HUMAN 111 556 DBREF 6UV2 C 0 9 PDB 6UV2 6UV2 0 9 SEQADV 6UV2 SER A 30 UNP Q92841 EXPRESSION TAG SEQADV 6UV2 GLY A 31 UNP Q92841 EXPRESSION TAG SEQRES 1 A 448 SER GLY GLY ASN PRO GLY GLU ARG LEU ARG LYS LYS LYS SEQRES 2 A 448 TRP ASP LEU SER GLU LEU PRO LYS PHE GLU LYS ASN PHE SEQRES 3 A 448 TYR VAL GLU HIS PRO GLU VAL ALA ARG LEU THR PRO TYR SEQRES 4 A 448 GLU VAL ASP GLU LEU ARG ARG LYS LYS GLU ILE THR VAL SEQRES 5 A 448 ARG GLY GLY ASP VAL CYS PRO LYS PRO VAL PHE ALA PHE SEQRES 6 A 448 HIS HIS ALA ASN PHE PRO GLN TYR VAL MET ASP VAL LEU SEQRES 7 A 448 MET ASP GLN HIS PHE THR GLU PRO THR PRO ILE GLN CYS SEQRES 8 A 448 GLN GLY PHE PRO LEU ALA LEU SER GLY ARG ASP MET VAL SEQRES 9 A 448 GLY ILE ALA GLN THR GLY SER GLY LYS THR LEU ALA TYR SEQRES 10 A 448 LEU LEU PRO ALA ILE VAL HIS ILE ASN HIS GLN PRO TYR SEQRES 11 A 448 LEU GLU ARG GLY ASP GLY PRO ILE CYS LEU VAL LEU ALA SEQRES 12 A 448 PRO THR ARG GLU LEU ALA GLN GLN VAL GLN GLN VAL ALA SEQRES 13 A 448 ASP ASP TYR GLY LYS CYS SER ARG LEU LYS SER THR CYS SEQRES 14 A 448 ILE TYR GLY GLY ALA PRO LYS GLY PRO GLN ILE ARG ASP SEQRES 15 A 448 LEU GLU ARG GLY VAL GLU ILE CYS ILE ALA THR PRO GLY SEQRES 16 A 448 ARG LEU ILE ASP PHE LEU GLU SER GLY LYS THR ASN LEU SEQRES 17 A 448 ARG ARG CYS THR TYR LEU VAL LEU ASP GLU ALA ASP ARG SEQRES 18 A 448 MET LEU ASP MET GLY PHE GLU PRO GLN ILE ARG LYS ILE SEQRES 19 A 448 VAL ASP GLN ILE ARG PRO ASP ARG GLN THR LEU MET TRP SEQRES 20 A 448 SER ALA THR TRP PRO LYS GLU VAL ARG GLN LEU ALA GLU SEQRES 21 A 448 ASP PHE LEU ARG ASP TYR THR GLN ILE ASN VAL GLY ASN SEQRES 22 A 448 LEU GLU LEU SER ALA ASN HIS ASN ILE LEU GLN ILE VAL SEQRES 23 A 448 ASP VAL CYS MET GLU SER GLU LYS ASP HIS LYS LEU ILE SEQRES 24 A 448 GLN LEU MET GLU GLU ILE MET ALA GLU LYS GLU ASN LYS SEQRES 25 A 448 THR ILE ILE PHE VAL GLU THR LYS ARG ARG CYS ASP ASP SEQRES 26 A 448 LEU THR ARG ARG MET ARG ARG ASP GLY TRP PRO ALA MET SEQRES 27 A 448 CYS ILE HIS GLY ASP LYS SER GLN PRO GLU ARG ASP TRP SEQRES 28 A 448 VAL LEU ASN GLU PHE ARG SER GLY LYS ALA PRO ILE LEU SEQRES 29 A 448 ILE ALA THR ASP VAL ALA SER ARG GLY LEU ASP VAL GLU SEQRES 30 A 448 ASP VAL LYS PHE VAL ILE ASN TYR ASP TYR PRO ASN SER SEQRES 31 A 448 SER GLU ASP TYR VAL HIS ARG ILE GLY ARG THR ALA ARG SEQRES 32 A 448 SER THR ASN LYS GLY THR ALA TYR THR PHE PHE THR PRO SEQRES 33 A 448 GLY ASN LEU LYS GLN ALA ARG GLU LEU ILE LYS VAL LEU SEQRES 34 A 448 GLU GLU ALA ASN GLN ALA ILE ASN PRO LYS LEU MET GLN SEQRES 35 A 448 LEU VAL ASP HIS ARG GLY SEQRES 1 C 10 C A C A C A C C U G HET ADP A 501 27 HET BEF A 502 4 HET MG A 503 1 HET MG A 504 1 HET MG A 505 1 HET MG A 506 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM BEF BERYLLIUM TRIFLUORIDE ION HETNAM MG MAGNESIUM ION FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 BEF BE F3 1- FORMUL 5 MG 4(MG 2+) FORMUL 9 HOH *365(H2 O) HELIX 1 AA1 HIS A 59 ARG A 64 1 6 HELIX 2 AA2 THR A 66 GLU A 78 1 13 HELIX 3 AA3 ALA A 93 ALA A 97 5 5 HELIX 4 AA4 PRO A 100 GLN A 110 1 11 HELIX 5 AA5 THR A 116 SER A 128 1 13 HELIX 6 AA6 GLY A 141 HIS A 156 1 16 HELIX 7 AA7 THR A 174 LYS A 190 1 17 HELIX 8 AA8 PRO A 204 GLY A 215 1 12 HELIX 9 AA9 THR A 222 SER A 232 1 11 HELIX 10 AB1 GLU A 247 LEU A 252 1 6 HELIX 11 AB2 PHE A 256 ASP A 265 1 10 HELIX 12 AB3 PRO A 281 GLU A 289 1 9 HELIX 13 AB4 ASP A 290 LEU A 292 5 3 HELIX 14 AB5 MET A 319 SER A 321 5 3 HELIX 15 AB6 GLU A 322 MET A 335 1 14 HELIX 16 AB7 THR A 348 ASP A 362 1 15 HELIX 17 AB8 SER A 374 GLY A 388 1 15 HELIX 18 AB9 ASP A 397 SER A 400 5 4 HELIX 19 AC1 SER A 419 GLY A 428 1 10 HELIX 20 AC2 THR A 444 LYS A 449 5 6 HELIX 21 AC3 GLN A 450 ALA A 461 1 12 HELIX 22 AC4 ASN A 466 VAL A 473 1 8 SHEET 1 AA1 8 ILE A 79 VAL A 81 0 SHEET 2 AA1 8 THR A 296 VAL A 300 -1 O ASN A 299 N THR A 80 SHEET 3 AA1 8 MET A 132 ILE A 135 1 N VAL A 133 O ILE A 298 SHEET 4 AA1 8 GLN A 272 SER A 277 1 O MET A 275 N GLY A 134 SHEET 5 AA1 8 TYR A 242 LEU A 245 1 N LEU A 243 O GLN A 272 SHEET 6 AA1 8 CYS A 168 LEU A 171 1 N LEU A 169 O VAL A 244 SHEET 7 AA1 8 ILE A 218 ALA A 221 1 O ALA A 221 N VAL A 170 SHEET 8 AA1 8 SER A 196 ILE A 199 1 N ILE A 199 O ILE A 220 SHEET 1 AA2 6 ILE A 311 VAL A 317 0 SHEET 2 AA2 6 GLY A 437 PHE A 443 1 O THR A 441 N ASP A 316 SHEET 3 AA2 6 PHE A 410 ASN A 413 1 N ASN A 413 O PHE A 442 SHEET 4 AA2 6 THR A 342 PHE A 345 1 N PHE A 345 O ILE A 412 SHEET 5 AA2 6 ILE A 392 ALA A 395 1 O LEU A 393 N ILE A 344 SHEET 6 AA2 6 ALA A 366 ILE A 369 1 N MET A 367 O ILE A 394 LINK O GLY A 129 MG MG A 505 1555 1555 2.75 LINK OD1 ASP A 131 MG MG A 505 1555 1555 2.74 LINK O ASN A 302 MG MG A 506 1555 1555 2.53 LINK O GLU A 304 MG MG A 506 1555 1555 2.34 LINK OG SER A 306 MG MG A 506 1555 1555 2.44 LINK O3B ADP A 501 BE BEF A 502 1555 1555 1.41 LINK O1B ADP A 501 MG MG A 503 1555 1555 2.10 LINK MG MG A 503 O HOH A 697 1555 1555 2.06 LINK MG MG A 503 O HOH A 726 1555 1555 2.21 LINK MG MG A 503 O HOH A 735 1555 1555 2.15 LINK MG MG A 503 O HOH A 736 1555 1555 2.16 LINK MG MG A 504 O HOH A 786 1555 1555 2.61 LINK MG MG A 506 O HOH A 775 1555 1555 2.83 LINK MG MG A 506 O HOH A 776 1555 1555 2.26 SITE 1 AC1 23 PHE A 94 PHE A 112 GLU A 114 GLN A 119 SITE 2 AC1 23 GLN A 137 GLY A 139 SER A 140 GLY A 141 SITE 3 AC1 23 LYS A 142 THR A 143 ASP A 404 ARG A 432 SITE 4 AC1 23 SER A 433 BEF A 502 MG A 503 HOH A 655 SITE 5 AC1 23 HOH A 675 HOH A 697 HOH A 726 HOH A 741 SITE 6 AC1 23 HOH A 743 HOH A 790 HOH A 800 SITE 1 AC2 13 THR A 138 GLY A 139 LYS A 142 GLU A 247 SITE 2 AC2 13 GLY A 402 ARG A 429 ARG A 432 ADP A 501 SITE 3 AC2 13 MG A 503 HOH A 726 HOH A 735 HOH A 736 SITE 4 AC2 13 HOH A 787 SITE 1 AC3 6 ADP A 501 BEF A 502 HOH A 697 HOH A 726 SITE 2 AC3 6 HOH A 735 HOH A 736 SITE 1 AC4 7 ARG A 130 ASP A 131 ARG A 293 ASP A 294 SITE 2 AC4 7 MG A 505 HOH A 786 HOH A 892 SITE 1 AC5 6 LYS A 53 GLY A 129 ASP A 131 GLN A 272 SITE 2 AC5 6 MG A 504 HOH A 786 SITE 1 AC6 5 ASN A 302 GLU A 304 SER A 306 HOH A 775 SITE 2 AC6 5 HOH A 776 CRYST1 112.722 112.722 99.426 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008871 0.005122 0.000000 0.00000 SCALE2 0.000000 0.010244 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010058 0.00000