HEADER RNA BINDING PROTEIN/RNA 01-NOV-19 6UV4 TITLE CRYSTAL STRUCTURE OF THE CORE DOMAIN OF RNA HELICASE DDX17 WITH RNA TITLE 2 PRI-18A-OLIGO1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE ATP-DEPENDENT RNA HELICASE DDX17; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DEAD BOX PROTEIN 17,DEAD BOX PROTEIN P72,DEAD BOX PROTEIN COMPND 5 P82,RNA-DEPENDENT HELICASE P72; COMPND 6 EC: 3.6.4.13; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 18A_OLIGO1; COMPND 10 CHAIN: C; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DDX17; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS DEAD-BOX ATPASE, RNA HELICASE, RNA BINDING, RNA BINDING PROTEIN, RNA KEYWDS 2 BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.D.NGO,A.C.PARTIN,Y.NAM REVDAT 4 03-APR-24 6UV4 1 REMARK REVDAT 3 06-MAR-24 6UV4 1 LINK REVDAT 2 15-JAN-20 6UV4 1 TITLE REVDAT 1 01-JAN-20 6UV4 0 JRNL AUTH T.D.NGO,A.C.PARTIN,Y.NAM JRNL TITL RNA SPECIFICITY AND AUTOREGULATION OF DDX17, A MODULATOR OF JRNL TITL 2 MICRORNA BIOGENESIS. JRNL REF CELL REP V. 29 4024 2019 JRNL REFN ESSN 2211-1247 JRNL PMID 31851931 JRNL DOI 10.1016/J.CELREP.2019.11.059 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 51398 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.890 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.5450 - 4.0732 1.00 3956 161 0.1833 0.2054 REMARK 3 2 4.0732 - 3.2333 1.00 3712 150 0.1530 0.1654 REMARK 3 3 3.2333 - 2.8246 1.00 3651 147 0.1643 0.2099 REMARK 3 4 2.8246 - 2.5664 1.00 3637 148 0.1686 0.1845 REMARK 3 5 2.5664 - 2.3824 1.00 3585 145 0.1597 0.1928 REMARK 3 6 2.3824 - 2.2420 1.00 3579 145 0.1619 0.2200 REMARK 3 7 2.2420 - 2.1297 1.00 3587 145 0.1654 0.2060 REMARK 3 8 2.1297 - 2.0370 1.00 3560 144 0.1690 0.2168 REMARK 3 9 2.0370 - 1.9586 1.00 3526 143 0.1718 0.2063 REMARK 3 10 1.9586 - 1.8910 0.99 3507 141 0.1780 0.2295 REMARK 3 11 1.8910 - 1.8318 0.99 3525 143 0.1959 0.2141 REMARK 3 12 1.8318 - 1.7795 0.97 3461 140 0.2048 0.2590 REMARK 3 13 1.7795 - 1.7326 0.93 3269 133 0.2119 0.2454 REMARK 3 14 1.7326 - 1.7000 0.81 2843 115 0.2175 0.2404 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UV4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1000244684. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52488 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 22.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 36.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: DDX17_RU10 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE PH 4.6, 0.1M REMARK 280 SODIUM CHLORIDE, 14% MDP, 10 MM CACL2, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 115.59800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.79900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 173.39700 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 115.59800 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 173.39700 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 57.79900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 609 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 936 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 30 REMARK 465 GLY A 31 REMARK 465 GLY A 32 REMARK 465 ASN A 33 REMARK 465 PRO A 34 REMARK 465 GLY A 35 REMARK 465 GLU A 36 REMARK 465 ARG A 37 REMARK 465 LEU A 38 REMARK 465 ARG A 39 REMARK 465 LYS A 40 REMARK 465 LYS A 41 REMARK 465 LYS A 42 REMARK 465 TRP A 43 REMARK 465 ASP A 44 REMARK 465 LEU A 45 REMARK 465 SER A 46 REMARK 465 VAL A 473 REMARK 465 ASP A 474 REMARK 465 HIS A 475 REMARK 465 ARG A 476 REMARK 465 GLY A 477 REMARK 465 A C 1 REMARK 465 U C 2 REMARK 465 A C 10 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 47 CG CD OE1 OE2 REMARK 470 LEU A 48 CG CD1 CD2 REMARK 470 PRO A 49 CG CD REMARK 470 LYS A 50 CG CD CE NZ REMARK 470 GLU A 52 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 720 O HOH A 896 2.08 REMARK 500 O HOH A 1012 O HOH A 1013 2.08 REMARK 500 O HOH A 633 O HOH C 114 2.09 REMARK 500 O HOH A 610 O HOH A 787 2.10 REMARK 500 O HOH A 892 O HOH A 1008 2.13 REMARK 500 O HOH A 967 O HOH A 969 2.13 REMARK 500 O HOH A 777 O HOH A 975 2.15 REMARK 500 O HOH A 941 O HOH C 111 2.16 REMARK 500 O HOH A 880 O HOH A 946 2.17 REMARK 500 O HOH A 916 O HOH A 988 2.18 REMARK 500 O HOH A 733 O HOH A 972 2.18 REMARK 500 NZ LYS A 468 O HOH A 601 2.18 REMARK 500 OD2 ASP A 187 O HOH A 602 2.19 REMARK 500 O HOH A 891 O HOH A 917 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 652 O HOH A 769 8655 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 433 -138.96 52.71 REMARK 500 THR A 434 51.94 -92.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1020 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A1021 DISTANCE = 5.95 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BEF A 502 BE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 501 O1B REMARK 620 2 BEF A 502 F1 115.4 REMARK 620 3 BEF A 502 F2 108.0 108.0 REMARK 620 4 BEF A 502 F3 116.8 106.2 101.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 501 O3B REMARK 620 2 HOH A 655 O 91.1 REMARK 620 3 HOH A 695 O 175.1 85.1 REMARK 620 4 HOH A 728 O 99.7 85.6 83.2 REMARK 620 5 HOH A 744 O 89.8 93.6 87.3 170.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEF A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 503 DBREF 6UV4 A 32 477 UNP Q92841 DDX17_HUMAN 111 556 DBREF 6UV4 C 1 10 PDB 6UV4 6UV4 1 10 SEQADV 6UV4 SER A 30 UNP Q92841 EXPRESSION TAG SEQADV 6UV4 GLY A 31 UNP Q92841 EXPRESSION TAG SEQRES 1 A 448 SER GLY GLY ASN PRO GLY GLU ARG LEU ARG LYS LYS LYS SEQRES 2 A 448 TRP ASP LEU SER GLU LEU PRO LYS PHE GLU LYS ASN PHE SEQRES 3 A 448 TYR VAL GLU HIS PRO GLU VAL ALA ARG LEU THR PRO TYR SEQRES 4 A 448 GLU VAL ASP GLU LEU ARG ARG LYS LYS GLU ILE THR VAL SEQRES 5 A 448 ARG GLY GLY ASP VAL CYS PRO LYS PRO VAL PHE ALA PHE SEQRES 6 A 448 HIS HIS ALA ASN PHE PRO GLN TYR VAL MET ASP VAL LEU SEQRES 7 A 448 MET ASP GLN HIS PHE THR GLU PRO THR PRO ILE GLN CYS SEQRES 8 A 448 GLN GLY PHE PRO LEU ALA LEU SER GLY ARG ASP MET VAL SEQRES 9 A 448 GLY ILE ALA GLN THR GLY SER GLY LYS THR LEU ALA TYR SEQRES 10 A 448 LEU LEU PRO ALA ILE VAL HIS ILE ASN HIS GLN PRO TYR SEQRES 11 A 448 LEU GLU ARG GLY ASP GLY PRO ILE CYS LEU VAL LEU ALA SEQRES 12 A 448 PRO THR ARG GLU LEU ALA GLN GLN VAL GLN GLN VAL ALA SEQRES 13 A 448 ASP ASP TYR GLY LYS CYS SER ARG LEU LYS SER THR CYS SEQRES 14 A 448 ILE TYR GLY GLY ALA PRO LYS GLY PRO GLN ILE ARG ASP SEQRES 15 A 448 LEU GLU ARG GLY VAL GLU ILE CYS ILE ALA THR PRO GLY SEQRES 16 A 448 ARG LEU ILE ASP PHE LEU GLU SER GLY LYS THR ASN LEU SEQRES 17 A 448 ARG ARG CYS THR TYR LEU VAL LEU ASP GLU ALA ASP ARG SEQRES 18 A 448 MET LEU ASP MET GLY PHE GLU PRO GLN ILE ARG LYS ILE SEQRES 19 A 448 VAL ASP GLN ILE ARG PRO ASP ARG GLN THR LEU MET TRP SEQRES 20 A 448 SER ALA THR TRP PRO LYS GLU VAL ARG GLN LEU ALA GLU SEQRES 21 A 448 ASP PHE LEU ARG ASP TYR THR GLN ILE ASN VAL GLY ASN SEQRES 22 A 448 LEU GLU LEU SER ALA ASN HIS ASN ILE LEU GLN ILE VAL SEQRES 23 A 448 ASP VAL CYS MET GLU SER GLU LYS ASP HIS LYS LEU ILE SEQRES 24 A 448 GLN LEU MET GLU GLU ILE MET ALA GLU LYS GLU ASN LYS SEQRES 25 A 448 THR ILE ILE PHE VAL GLU THR LYS ARG ARG CYS ASP ASP SEQRES 26 A 448 LEU THR ARG ARG MET ARG ARG ASP GLY TRP PRO ALA MET SEQRES 27 A 448 CYS ILE HIS GLY ASP LYS SER GLN PRO GLU ARG ASP TRP SEQRES 28 A 448 VAL LEU ASN GLU PHE ARG SER GLY LYS ALA PRO ILE LEU SEQRES 29 A 448 ILE ALA THR ASP VAL ALA SER ARG GLY LEU ASP VAL GLU SEQRES 30 A 448 ASP VAL LYS PHE VAL ILE ASN TYR ASP TYR PRO ASN SER SEQRES 31 A 448 SER GLU ASP TYR VAL HIS ARG ILE GLY ARG THR ALA ARG SEQRES 32 A 448 SER THR ASN LYS GLY THR ALA TYR THR PHE PHE THR PRO SEQRES 33 A 448 GLY ASN LEU LYS GLN ALA ARG GLU LEU ILE LYS VAL LEU SEQRES 34 A 448 GLU GLU ALA ASN GLN ALA ILE ASN PRO LYS LEU MET GLN SEQRES 35 A 448 LEU VAL ASP HIS ARG GLY SEQRES 1 C 10 A U U C A U C C A A HET ADP A 501 27 HET BEF A 502 4 HET MG A 503 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM BEF BERYLLIUM TRIFLUORIDE ION HETNAM MG MAGNESIUM ION FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 BEF BE F3 1- FORMUL 5 MG MG 2+ FORMUL 6 HOH *445(H2 O) HELIX 1 AA1 HIS A 59 ARG A 64 1 6 HELIX 2 AA2 THR A 66 GLU A 78 1 13 HELIX 3 AA3 ALA A 93 ASN A 98 5 6 HELIX 4 AA4 PRO A 100 HIS A 111 1 12 HELIX 5 AA5 THR A 116 SER A 128 1 13 HELIX 6 AA6 GLY A 141 HIS A 156 1 16 HELIX 7 AA7 THR A 174 GLY A 189 1 16 HELIX 8 AA8 PRO A 204 GLY A 215 1 12 HELIX 9 AA9 THR A 222 SER A 232 1 11 HELIX 10 AB1 GLU A 247 LEU A 252 1 6 HELIX 11 AB2 PHE A 256 ASP A 265 1 10 HELIX 12 AB3 PRO A 281 GLU A 283 5 3 HELIX 13 AB4 VAL A 284 GLU A 289 1 6 HELIX 14 AB5 ASP A 290 LEU A 292 5 3 HELIX 15 AB6 MET A 319 SER A 321 5 3 HELIX 16 AB7 GLU A 322 MET A 335 1 14 HELIX 17 AB8 THR A 348 ASP A 362 1 15 HELIX 18 AB9 SER A 374 SER A 387 1 14 HELIX 19 AC1 ASP A 397 SER A 400 5 4 HELIX 20 AC2 SER A 419 GLY A 428 1 10 HELIX 21 AC3 THR A 444 LYS A 449 5 6 HELIX 22 AC4 GLN A 450 ALA A 461 1 12 HELIX 23 AC5 ASN A 466 GLN A 471 1 6 SHEET 1 AA1 8 ILE A 79 GLY A 83 0 SHEET 2 AA1 8 THR A 296 VAL A 300 -1 O GLN A 297 N ARG A 82 SHEET 3 AA1 8 MET A 132 ILE A 135 1 N VAL A 133 O ILE A 298 SHEET 4 AA1 8 GLN A 272 SER A 277 1 O MET A 275 N GLY A 134 SHEET 5 AA1 8 TYR A 242 ASP A 246 1 N LEU A 243 O GLN A 272 SHEET 6 AA1 8 CYS A 168 LEU A 171 1 N LEU A 169 O VAL A 244 SHEET 7 AA1 8 ILE A 218 ALA A 221 1 O ALA A 221 N VAL A 170 SHEET 8 AA1 8 SER A 196 ILE A 199 1 N ILE A 199 O ILE A 220 SHEET 1 AA2 6 ILE A 311 VAL A 317 0 SHEET 2 AA2 6 GLY A 437 PHE A 443 1 O THR A 441 N ASP A 316 SHEET 3 AA2 6 PHE A 410 ASN A 413 1 N VAL A 411 O TYR A 440 SHEET 4 AA2 6 THR A 342 PHE A 345 1 N ILE A 343 O ILE A 412 SHEET 5 AA2 6 ILE A 392 ALA A 395 1 O LEU A 393 N ILE A 344 SHEET 6 AA2 6 ALA A 366 ILE A 369 1 N MET A 367 O ILE A 394 LINK O1B ADP A 501 BE BEF A 502 1555 1555 1.41 LINK O3B ADP A 501 MG MG A 503 1555 1555 2.04 LINK MG MG A 503 O HOH A 655 1555 1555 2.12 LINK MG MG A 503 O HOH A 695 1555 1555 2.16 LINK MG MG A 503 O HOH A 728 1555 1555 2.14 LINK MG MG A 503 O HOH A 744 1555 1555 2.16 SITE 1 AC1 23 PHE A 94 PHE A 112 GLU A 114 THR A 116 SITE 2 AC1 23 GLN A 119 GLN A 137 GLY A 139 SER A 140 SITE 3 AC1 23 GLY A 141 LYS A 142 THR A 143 ASP A 404 SITE 4 AC1 23 ARG A 432 SER A 433 BEF A 502 MG A 503 SITE 5 AC1 23 HOH A 655 HOH A 710 HOH A 744 HOH A 749 SITE 6 AC1 23 HOH A 750 HOH A 833 HOH A 840 SITE 1 AC2 13 THR A 138 GLY A 139 LYS A 142 GLU A 247 SITE 2 AC2 13 GLY A 402 ARG A 429 ARG A 432 ADP A 501 SITE 3 AC2 13 MG A 503 HOH A 695 HOH A 728 HOH A 744 SITE 4 AC2 13 HOH A 822 SITE 1 AC3 6 ADP A 501 BEF A 502 HOH A 655 HOH A 695 SITE 2 AC3 6 HOH A 728 HOH A 744 CRYST1 62.504 62.504 231.196 90.00 90.00 90.00 P 41 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015999 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015999 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004325 0.00000