HEADER APOPTOSIS/INHIBITOR 02-NOV-19 6UVD TITLE CRYSTAL STRUCTURE OF BCL-XL BOUND TO COMPOUND 2: (2R)-3- TITLE 2 (BENZYLSULFANYL)-2-({[(4-METHYLPHENYL)METHYL] [(4 PHENYLPHENYL) TITLE 3 CARBONYL] CARBAMOYL}AMINO) PROPANOIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: BCL-2-LIKE PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BCL2-L-1,APOPTOSIS REGULATOR BCL-X; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BCL2L1, BCL2L, BCLX; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS APOPTOSIS, BCL-2 FAMILY, BCL-XL, INHIBITOR, APOPTOSIS-INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.J.ROY,R.BIRKINSHAW,G.LESSENE,P.E.CZABOTAR REVDAT 4 11-OCT-23 6UVD 1 REMARK REVDAT 3 26-MAY-21 6UVD 1 JRNL REVDAT 2 12-MAY-21 6UVD 1 JRNL REVDAT 1 05-MAY-21 6UVD 0 JRNL AUTH M.J.ROY,A.VOM,T.OKAMOTO,B.J.SMITH,R.W.BIRKINSHAW,H.YANG, JRNL AUTH 2 H.ABDO,C.A.WHITE,D.SEGAL,D.C.S.HUANG,J.B.BAELL,P.M.COLMAN, JRNL AUTH 3 P.E.CZABOTAR,G.LESSENE JRNL TITL STRUCTURE-GUIDED DEVELOPMENT OF POTENT BENZOYLUREA JRNL TITL 2 INHIBITORS OF BCL-X L AND BCL-2. JRNL REF J.MED.CHEM. V. 64 5447 2021 JRNL REFN ISSN 0022-2623 JRNL PMID 33904752 JRNL DOI 10.1021/ACS.JMEDCHEM.0C01771 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 22287 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 1095 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.16 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 446 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2015 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 414 REMARK 3 BIN R VALUE (WORKING SET) : 0.1977 REMARK 3 BIN FREE R VALUE : 0.2636 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.17 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 32 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2285 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 137 REMARK 3 SOLVENT ATOMS : 111 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.83160 REMARK 3 B22 (A**2) : 0.83160 REMARK 3 B33 (A**2) : -1.66320 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.230 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.181 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.157 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.179 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.157 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2605 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3509 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 901 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 502 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2605 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 296 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3271 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.91 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.87 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.08 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|-3 - A|20 } REMARK 3 ORIGIN FOR THE GROUP (A): 30.8967 -39.9876 -15.1117 REMARK 3 T TENSOR REMARK 3 T11: -0.0317 T22: -0.0630 REMARK 3 T33: -0.0652 T12: -0.0604 REMARK 3 T13: 0.0354 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 12.0021 L22: 0.6380 REMARK 3 L33: 0.0000 L12: -0.7380 REMARK 3 L13: 1.1570 L23: -0.0047 REMARK 3 S TENSOR REMARK 3 S11: 0.0629 S12: 0.1892 S13: 0.1416 REMARK 3 S21: 0.0955 S22: -0.0045 S23: 0.0831 REMARK 3 S31: -0.0012 S32: 0.0141 S33: -0.0584 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|21 - A|111 } REMARK 3 ORIGIN FOR THE GROUP (A): 45.5629 -38.3055 -30.5814 REMARK 3 T TENSOR REMARK 3 T11: -0.0321 T22: 0.0505 REMARK 3 T33: 0.0347 T12: 0.0098 REMARK 3 T13: -0.0037 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.1135 L22: 0.5740 REMARK 3 L33: 3.6320 L12: 0.1794 REMARK 3 L13: -0.3946 L23: -0.9317 REMARK 3 S TENSOR REMARK 3 S11: 0.0004 S12: 0.0282 S13: 0.1675 REMARK 3 S21: 0.1067 S22: 0.0401 S23: -0.1571 REMARK 3 S31: -0.1388 S32: 0.0451 S33: -0.0406 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|112 - A|136 } REMARK 3 ORIGIN FOR THE GROUP (A): 39.4365 -37.6943 -47.8421 REMARK 3 T TENSOR REMARK 3 T11: -0.0635 T22: 0.0095 REMARK 3 T33: -0.0530 T12: -0.0527 REMARK 3 T13: 0.0375 T23: 0.0532 REMARK 3 L TENSOR REMARK 3 L11: 0.6364 L22: 2.3138 REMARK 3 L33: 2.3455 L12: 0.2195 REMARK 3 L13: 0.1337 L23: -0.0360 REMARK 3 S TENSOR REMARK 3 S11: 0.0551 S12: 0.1015 S13: 0.0540 REMARK 3 S21: -0.3172 S22: 0.1479 S23: 0.1449 REMARK 3 S31: 0.0181 S32: 0.0039 S33: -0.2029 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|137 - A|177 } REMARK 3 ORIGIN FOR THE GROUP (A): 36.1336 -36.5047 -39.4825 REMARK 3 T TENSOR REMARK 3 T11: -0.0214 T22: 0.0692 REMARK 3 T33: 0.0190 T12: -0.0429 REMARK 3 T13: 0.0100 T23: 0.0182 REMARK 3 L TENSOR REMARK 3 L11: 1.0079 L22: -0.5160 REMARK 3 L33: 1.0908 L12: -0.1559 REMARK 3 L13: 0.0946 L23: -0.7140 REMARK 3 S TENSOR REMARK 3 S11: 0.0469 S12: 0.1581 S13: 0.0636 REMARK 3 S21: -0.0158 S22: -0.0170 S23: -0.0094 REMARK 3 S31: -0.0128 S32: -0.0992 S33: -0.0299 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|178 - A|186 } REMARK 3 ORIGIN FOR THE GROUP (A): 43.0106 -54.1936 -39.4154 REMARK 3 T TENSOR REMARK 3 T11: 0.1179 T22: 0.0003 REMARK 3 T33: 0.0298 T12: -0.0125 REMARK 3 T13: -0.0041 T23: -0.0343 REMARK 3 L TENSOR REMARK 3 L11: -0.0799 L22: 7.1907 REMARK 3 L33: 0.0000 L12: 3.1219 REMARK 3 L13: -0.5889 L23: -0.6599 REMARK 3 S TENSOR REMARK 3 S11: 0.0554 S12: 0.0554 S13: -0.0812 REMARK 3 S21: -0.1785 S22: 0.0642 S23: 0.0794 REMARK 3 S31: 0.5568 S32: 0.0502 S33: -0.1197 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { A|187 - A|197 } REMARK 3 ORIGIN FOR THE GROUP (A): 48.1681 -50.1217 -28.7730 REMARK 3 T TENSOR REMARK 3 T11: -0.0010 T22: -0.0648 REMARK 3 T33: -0.0740 T12: 0.0244 REMARK 3 T13: -0.0170 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.5927 L22: 2.9119 REMARK 3 L33: 0.0000 L12: -1.2080 REMARK 3 L13: 3.1550 L23: 0.8367 REMARK 3 S TENSOR REMARK 3 S11: -0.0773 S12: -0.2184 S13: -0.3155 REMARK 3 S21: 0.1491 S22: 0.1446 S23: -0.1157 REMARK 3 S31: 0.4014 S32: -0.1093 S33: -0.0673 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { B|3 - B|83 } REMARK 3 ORIGIN FOR THE GROUP (A): 33.8676 -37.1921 -29.0635 REMARK 3 T TENSOR REMARK 3 T11: -0.0696 T22: 0.0096 REMARK 3 T33: -0.0450 T12: -0.0174 REMARK 3 T13: 0.0263 T23: 0.0421 REMARK 3 L TENSOR REMARK 3 L11: 0.5650 L22: 0.2052 REMARK 3 L33: 2.8046 L12: -0.5478 REMARK 3 L13: 0.9112 L23: 1.4773 REMARK 3 S TENSOR REMARK 3 S11: -0.0403 S12: 0.0182 S13: -0.0128 REMARK 3 S21: 0.4240 S22: 0.0792 S23: 0.1976 REMARK 3 S31: 0.2178 S32: -0.0686 S33: -0.0389 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: { B|84 - B|100 } REMARK 3 ORIGIN FOR THE GROUP (A): 38.8762 -31.2638 -11.2826 REMARK 3 T TENSOR REMARK 3 T11: -0.0188 T22: -0.0555 REMARK 3 T33: 0.0705 T12: -0.0664 REMARK 3 T13: 0.0459 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 4.3423 L22: 0.3767 REMARK 3 L33: 10.3304 L12: -2.4542 REMARK 3 L13: 4.3484 L23: -1.5944 REMARK 3 S TENSOR REMARK 3 S11: 0.1685 S12: 0.1696 S13: 0.6250 REMARK 3 S21: 0.0073 S22: -0.0253 S23: -0.1359 REMARK 3 S31: -0.1328 S32: 0.0929 S33: -0.1431 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: { B|101 - B|111 } REMARK 3 ORIGIN FOR THE GROUP (A): 43.8856 -35.5276 2.8156 REMARK 3 T TENSOR REMARK 3 T11: -0.0305 T22: 0.0339 REMARK 3 T33: 0.0379 T12: -0.0349 REMARK 3 T13: 0.0217 T23: -0.1126 REMARK 3 L TENSOR REMARK 3 L11: -1.9515 L22: 5.1478 REMARK 3 L33: 4.0885 L12: 0.3479 REMARK 3 L13: 1.4564 L23: 0.8922 REMARK 3 S TENSOR REMARK 3 S11: 0.2300 S12: -0.4945 S13: 0.1440 REMARK 3 S21: 0.1094 S22: -0.0614 S23: -0.2450 REMARK 3 S31: 0.0650 S32: 0.0531 S33: -0.1686 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: { B|112 - B|119 } REMARK 3 ORIGIN FOR THE GROUP (A): 34.8144 -53.1661 1.7095 REMARK 3 T TENSOR REMARK 3 T11: 0.0655 T22: 0.0123 REMARK 3 T33: 0.1240 T12: -0.0547 REMARK 3 T13: -0.1133 T23: -0.0460 REMARK 3 L TENSOR REMARK 3 L11: -1.4770 L22: 6.2534 REMARK 3 L33: 1.9315 L12: -0.5261 REMARK 3 L13: 0.1387 L23: -4.4305 REMARK 3 S TENSOR REMARK 3 S11: -0.0019 S12: -0.1154 S13: -0.3152 REMARK 3 S21: 0.1254 S22: 0.0954 S23: -0.1501 REMARK 3 S31: 0.3436 S32: 0.1420 S33: -0.0935 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: { B|120 - B|130 } REMARK 3 ORIGIN FOR THE GROUP (A): 28.1070 -43.3017 3.8915 REMARK 3 T TENSOR REMARK 3 T11: 0.0126 T22: 0.0575 REMARK 3 T33: -0.0938 T12: -0.1464 REMARK 3 T13: 0.0191 T23: -0.0141 REMARK 3 L TENSOR REMARK 3 L11: 4.2263 L22: 5.7464 REMARK 3 L33: 0.3395 L12: 0.2534 REMARK 3 L13: -0.3325 L23: -0.0023 REMARK 3 S TENSOR REMARK 3 S11: 0.2754 S12: -0.5169 S13: 0.0364 REMARK 3 S21: 0.2114 S22: -0.1079 S23: 0.1330 REMARK 3 S31: 0.1465 S32: 0.1009 S33: -0.1675 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: { B|131 - B|177 } REMARK 3 ORIGIN FOR THE GROUP (A): 32.6990 -43.3486 -4.1037 REMARK 3 T TENSOR REMARK 3 T11: -0.0585 T22: -0.0396 REMARK 3 T33: -0.0833 T12: -0.0711 REMARK 3 T13: -0.0043 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 3.1148 L22: 0.5610 REMARK 3 L33: 0.8734 L12: 1.3829 REMARK 3 L13: -0.5248 L23: -0.0084 REMARK 3 S TENSOR REMARK 3 S11: 0.1358 S12: -0.3528 S13: 0.0225 REMARK 3 S21: 0.2822 S22: -0.0755 S23: -0.0261 REMARK 3 S31: 0.0755 S32: -0.0176 S33: -0.0604 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: { B|178 - B|196 } REMARK 3 ORIGIN FOR THE GROUP (A): 25.7681 -26.7098 -8.1427 REMARK 3 T TENSOR REMARK 3 T11: -0.0898 T22: -0.1292 REMARK 3 T33: 0.1472 T12: 0.0043 REMARK 3 T13: 0.0686 T23: -0.0211 REMARK 3 L TENSOR REMARK 3 L11: 6.3739 L22: 6.0407 REMARK 3 L33: 8.3579 L12: -2.0351 REMARK 3 L13: -1.7112 L23: -2.2506 REMARK 3 S TENSOR REMARK 3 S11: 0.2722 S12: -0.0520 S13: 1.0796 REMARK 3 S21: -0.2809 S22: -0.1847 S23: -0.2922 REMARK 3 S31: -0.2836 S32: -0.1811 S33: -0.0875 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UVD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1000245270. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22376 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.54200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2YXJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4 M AMMONIUM SULPHATE, 0.1 M HEPES REMARK 280 PH 6.5, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.74500 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 49.49000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 49.49000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 24.74500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 ASN A 198 REMARK 465 ALA A 199 REMARK 465 ALA A 200 REMARK 465 ALA A 201 REMARK 465 GLU A 202 REMARK 465 SER A 203 REMARK 465 ARG A 204 REMARK 465 LYS A 205 REMARK 465 GLY A 206 REMARK 465 GLN A 207 REMARK 465 GLU A 208 REMARK 465 ARG A 209 REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 LEU B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASN B 197 REMARK 465 ASN B 198 REMARK 465 ALA B 199 REMARK 465 ALA B 200 REMARK 465 ALA B 201 REMARK 465 GLU B 202 REMARK 465 SER B 203 REMARK 465 ARG B 204 REMARK 465 LYS B 205 REMARK 465 GLY B 206 REMARK 465 GLN B 207 REMARK 465 GLU B 208 REMARK 465 ARG B 209 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 3 CG CD OE1 NE2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XOU A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XOU B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 306 DBREF 6UVD A 1 26 UNP Q07817 B2CL1_HUMAN 1 26 DBREF 6UVD A 83 209 UNP Q07817 B2CL1_HUMAN 83 209 DBREF 6UVD B 1 26 UNP Q07817 B2CL1_HUMAN 1 26 DBREF 6UVD B 83 209 UNP Q07817 B2CL1_HUMAN 83 209 SEQADV 6UVD GLY A -4 UNP Q07817 EXPRESSION TAG SEQADV 6UVD PRO A -3 UNP Q07817 EXPRESSION TAG SEQADV 6UVD LEU A -2 UNP Q07817 EXPRESSION TAG SEQADV 6UVD GLY A -1 UNP Q07817 EXPRESSION TAG SEQADV 6UVD SER A 0 UNP Q07817 EXPRESSION TAG SEQADV 6UVD GLY B -4 UNP Q07817 EXPRESSION TAG SEQADV 6UVD PRO B -3 UNP Q07817 EXPRESSION TAG SEQADV 6UVD LEU B -2 UNP Q07817 EXPRESSION TAG SEQADV 6UVD GLY B -1 UNP Q07817 EXPRESSION TAG SEQADV 6UVD SER B 0 UNP Q07817 EXPRESSION TAG SEQRES 1 A 158 GLY PRO LEU GLY SER MET SER GLN SER ASN ARG GLU LEU SEQRES 2 A 158 VAL VAL ASP PHE LEU SER TYR LYS LEU SER GLN LYS GLY SEQRES 3 A 158 TYR SER TRP SER GLN MET ALA ALA VAL LYS GLN ALA LEU SEQRES 4 A 158 ARG GLU ALA GLY ASP GLU PHE GLU LEU ARG TYR ARG ARG SEQRES 5 A 158 ALA PHE SER ASP LEU THR SER GLN LEU HIS ILE THR PRO SEQRES 6 A 158 GLY THR ALA TYR GLN SER PHE GLU GLN VAL VAL ASN GLU SEQRES 7 A 158 LEU PHE ARG ASP GLY VAL ASN TRP GLY ARG ILE VAL ALA SEQRES 8 A 158 PHE PHE SER PHE GLY GLY ALA LEU CYS VAL GLU SER VAL SEQRES 9 A 158 ASP LYS GLU MET GLN VAL LEU VAL SER ARG ILE ALA ALA SEQRES 10 A 158 TRP MET ALA THR TYR LEU ASN ASP HIS LEU GLU PRO TRP SEQRES 11 A 158 ILE GLN GLU ASN GLY GLY TRP ASP THR PHE VAL GLU LEU SEQRES 12 A 158 TYR GLY ASN ASN ALA ALA ALA GLU SER ARG LYS GLY GLN SEQRES 13 A 158 GLU ARG SEQRES 1 B 158 GLY PRO LEU GLY SER MET SER GLN SER ASN ARG GLU LEU SEQRES 2 B 158 VAL VAL ASP PHE LEU SER TYR LYS LEU SER GLN LYS GLY SEQRES 3 B 158 TYR SER TRP SER GLN MET ALA ALA VAL LYS GLN ALA LEU SEQRES 4 B 158 ARG GLU ALA GLY ASP GLU PHE GLU LEU ARG TYR ARG ARG SEQRES 5 B 158 ALA PHE SER ASP LEU THR SER GLN LEU HIS ILE THR PRO SEQRES 6 B 158 GLY THR ALA TYR GLN SER PHE GLU GLN VAL VAL ASN GLU SEQRES 7 B 158 LEU PHE ARG ASP GLY VAL ASN TRP GLY ARG ILE VAL ALA SEQRES 8 B 158 PHE PHE SER PHE GLY GLY ALA LEU CYS VAL GLU SER VAL SEQRES 9 B 158 ASP LYS GLU MET GLN VAL LEU VAL SER ARG ILE ALA ALA SEQRES 10 B 158 TRP MET ALA THR TYR LEU ASN ASP HIS LEU GLU PRO TRP SEQRES 11 B 158 ILE GLN GLU ASN GLY GLY TRP ASP THR PHE VAL GLU LEU SEQRES 12 B 158 TYR GLY ASN ASN ALA ALA ALA GLU SER ARG LYS GLY GLN SEQRES 13 B 158 GLU ARG HET XOU A 301 39 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HET EDO A 308 4 HET EDO A 309 4 HET EDO A 310 4 HET XOU B 301 39 HET EDO B 302 4 HET EDO B 303 4 HET EDO B 304 4 HET EDO B 305 4 HET EDO B 306 4 HETNAM XOU (2R)-3-(BENZYLSULFANYL)-2-({[(4-METHYLPHENYL)METHYL] HETNAM 2 XOU [(4 PHENYLPHENYL)CARBONYL] CARBAMOYL}AMINO) PROPANOIC HETNAM 3 XOU ACID HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 XOU 2(C32 H30 N2 O4 S) FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 EDO 11(C2 H6 O2) FORMUL 19 HOH *111(H2 O) HELIX 1 AA1 GLY A -1 LYS A 20 1 22 HELIX 2 AA2 SER A 25 SER A 110 1 30 HELIX 3 AA3 ALA A 119 ARG A 132 1 14 HELIX 4 AA4 ASN A 136 LYS A 157 1 22 HELIX 5 AA5 VAL A 161 LEU A 178 1 18 HELIX 6 AA6 LEU A 178 ASN A 185 1 8 HELIX 7 AA7 GLY A 186 ASN A 197 1 12 HELIX 8 AA8 SER B 4 LYS B 20 1 17 HELIX 9 AA9 MET B 83 TYR B 101 1 19 HELIX 10 AB1 TYR B 101 SER B 110 1 10 HELIX 11 AB2 ALA B 119 PHE B 131 1 13 HELIX 12 AB3 ASN B 136 LYS B 157 1 22 HELIX 13 AB4 VAL B 161 LEU B 178 1 18 HELIX 14 AB5 LEU B 178 ASN B 185 1 8 HELIX 15 AB6 GLY B 186 GLY B 196 1 11 SITE 1 AC1 17 ALA A 93 PHE A 97 ARG A 100 TYR A 101 SITE 2 AC1 17 ALA A 104 PHE A 105 ASN A 136 TRP A 137 SITE 3 AC1 17 GLY A 138 ARG A 139 ALA A 142 PHE A 191 SITE 4 AC1 17 HOH A 415 HOH A 426 ASP B 133 ARG B 139 SITE 5 AC1 17 XOU B 301 SITE 1 AC2 7 ARG A 100 TYR A 101 ARG A 102 ARG A 103 SITE 2 AC2 7 ALA A 104 HOH A 417 ASP B 107 SITE 1 AC3 7 TYR A 15 SER A 18 GLN A 19 GLN A 88 SITE 2 AC3 7 GLU A 92 LYS A 157 HOH A 456 SITE 1 AC4 7 ARG A 6 HOH A 403 SER B 4 ASN B 5 SITE 2 AC4 7 ARG B 6 SER B 164 HOH B 407 SITE 1 AC5 3 VAL A 135 TYR A 173 HIS A 177 SITE 1 AC6 4 ASP A 176 PRO B 116 GLY B 117 ARG B 165 SITE 1 AC7 5 PRO A 116 GLU A 158 MET A 159 GLN A 160 SITE 2 AC7 5 VAL A 161 SITE 1 AC8 3 GLU A 98 ARG A 102 ALA A 149 SITE 1 AC9 5 ASP A 133 GLY A 134 ASN A 136 ARG A 139 SITE 2 AC9 5 ASN B 136 SITE 1 AD1 13 GLU A 129 ARG A 139 XOU A 301 PHE B 97 SITE 2 AD1 13 TYR B 101 ALA B 104 LEU B 108 GLY B 138 SITE 3 AD1 13 ARG B 139 ALA B 142 EDO B 302 EDO B 303 SITE 4 AD1 13 HOH B 406 SITE 1 AD2 5 ASP A 133 ARG A 139 ASN B 136 ARG B 139 SITE 2 AD2 5 XOU B 301 SITE 1 AD3 5 GLU B 129 LEU B 130 ARG B 132 ASP B 133 SITE 2 AD3 5 XOU B 301 SITE 1 AD4 3 THR B 115 PRO B 116 GLY B 117 SITE 1 AD5 5 SER B 18 GLY B 21 TYR B 22 SER B 23 SITE 2 AD5 5 ALA B 85 SITE 1 AD6 1 TRP B 181 CRYST1 97.149 97.149 74.235 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010293 0.005943 0.000000 0.00000 SCALE2 0.000000 0.011886 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013471 0.00000