HEADER PLANT PROTEIN, TRANSFERASE 07-NOV-19 6UXH TITLE STRUCTURE OF SERINE HYDROXYMETHYLTRANSFERASE 8 FROM GLYCINE MAX TITLE 2 CULTIVAR ESSEX COMPLEXED WITH PLP COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE HYDROXYMETHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.1.2.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GLYCINE MAX; SOURCE 3 ORGANISM_COMMON: SOYBEAN; SOURCE 4 ORGANISM_TAXID: 3847; SOURCE 5 GENE: SHMT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FOLATE METABOLISM, METHYLTRANSFERASE, SOYBEAN CYST, NEMATODE KEYWDS 2 INFECTION RESISTANCE, CYTOPLASMIC ENZYME, PLANT PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.A.KORASICK,J.J.TANNER,L.J.BEAMER REVDAT 5 15-NOV-23 6UXH 1 REMARK REVDAT 4 11-OCT-23 6UXH 1 REMARK REVDAT 3 25-MAR-20 6UXH 1 JRNL REVDAT 2 19-FEB-20 6UXH 1 JRNL REVDAT 1 12-FEB-20 6UXH 0 JRNL AUTH D.A.KORASICK,P.K.KANDOTH,J.J.TANNER,M.G.MITCHUM,L.J.BEAMER JRNL TITL IMPAIRED FOLATE BINDING OF SERINE HYDROXYMETHYLTRANSFERASE 8 JRNL TITL 2 FROM SOYBEAN UNDERLIES RESISTANCE TO THE SOYBEAN CYST JRNL TITL 3 NEMATODE. JRNL REF J.BIOL.CHEM. V. 295 3708 2020 JRNL REFN ESSN 1083-351X JRNL PMID 32014996 JRNL DOI 10.1074/JBC.RA119.012256 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14-3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.310 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 74057 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 3652 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.0700 - 5.4994 1.00 3067 156 0.1662 0.1656 REMARK 3 2 5.4994 - 4.3665 1.00 2901 176 0.1430 0.1552 REMARK 3 3 4.3665 - 3.8150 1.00 2893 165 0.1361 0.1666 REMARK 3 4 3.8150 - 3.4663 1.00 2846 143 0.1663 0.2093 REMARK 3 5 3.4663 - 3.2180 1.00 2871 156 0.1919 0.2314 REMARK 3 6 3.2180 - 3.0283 1.00 2885 120 0.1950 0.2056 REMARK 3 7 3.0283 - 2.8767 1.00 2854 139 0.1920 0.2259 REMARK 3 8 2.8767 - 2.7515 1.00 2813 156 0.1923 0.2740 REMARK 3 9 2.7515 - 2.6456 1.00 2838 129 0.1949 0.2205 REMARK 3 10 2.6456 - 2.5543 1.00 2819 152 0.1971 0.2364 REMARK 3 11 2.5543 - 2.4745 1.00 2821 153 0.1927 0.2918 REMARK 3 12 2.4745 - 2.4037 1.00 2810 165 0.1956 0.2373 REMARK 3 13 2.4037 - 2.3405 1.00 2817 132 0.1982 0.2555 REMARK 3 14 2.3405 - 2.2834 1.00 2855 117 0.2214 0.2563 REMARK 3 15 2.2834 - 2.2314 0.98 2715 150 0.3190 0.4153 REMARK 3 16 2.2314 - 2.1840 0.98 2780 153 0.2686 0.3048 REMARK 3 17 2.1840 - 2.1403 1.00 2769 152 0.2211 0.2688 REMARK 3 18 2.1403 - 2.0999 1.00 2801 154 0.2137 0.2726 REMARK 3 19 2.0999 - 2.0624 1.00 2791 134 0.2867 0.3203 REMARK 3 20 2.0624 - 2.0274 1.00 2863 123 0.3165 0.3539 REMARK 3 21 2.0274 - 1.9947 1.00 2774 169 0.2488 0.2957 REMARK 3 22 1.9947 - 1.9640 1.00 2776 161 0.2593 0.2747 REMARK 3 23 1.9640 - 1.9352 0.99 2801 137 0.3259 0.3957 REMARK 3 24 1.9352 - 1.9079 0.52 1446 85 0.5509 0.6442 REMARK 3 25 1.9079 - 1.8821 0.90 1494 82 0.5220 0.4862 REMARK 3 26 1.8821 - 1.8580 0.91 2305 93 0.3785 0.3683 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID -1 THROUGH 470) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3804 -8.8126 30.3738 REMARK 3 T TENSOR REMARK 3 T11: 0.1518 T22: 0.2331 REMARK 3 T33: 0.1825 T12: -0.0157 REMARK 3 T13: 0.0240 T23: -0.0304 REMARK 3 L TENSOR REMARK 3 L11: 0.4415 L22: 1.9628 REMARK 3 L33: 1.1254 L12: -0.1710 REMARK 3 L13: 0.1532 L23: 0.4732 REMARK 3 S TENSOR REMARK 3 S11: 0.0344 S12: -0.1450 S13: 0.0323 REMARK 3 S21: 0.1507 S22: 0.0044 S23: -0.0553 REMARK 3 S31: -0.0450 S32: -0.0118 S33: -0.0244 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 0 THROUGH 470) REMARK 3 ORIGIN FOR THE GROUP (A): -13.5381 -30.3207 8.7253 REMARK 3 T TENSOR REMARK 3 T11: 0.1640 T22: 0.1822 REMARK 3 T33: 0.2204 T12: 0.0371 REMARK 3 T13: -0.0288 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 0.4064 L22: 1.2738 REMARK 3 L33: 1.7909 L12: 0.0750 REMARK 3 L13: -0.0699 L23: 0.4023 REMARK 3 S TENSOR REMARK 3 S11: 0.0615 S12: 0.0237 S13: -0.0973 REMARK 3 S21: -0.0954 S22: -0.0161 S23: 0.0102 REMARK 3 S31: 0.1322 S32: -0.0447 S33: -0.0498 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UXH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1000245299. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.6.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78106 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 47.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 12.30 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 2.12400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1CJ0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.175 M TRIMETHYLAMINE N-OXIDE, 0.1 M REMARK 280 TRIS (PH 8.5), 19.5% (W/V) PEG MME 2000, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.41000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.28500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.41000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.28500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 263 REMARK 465 LYS A 264 REMARK 465 LYS A 265 REMARK 465 GLY A 266 REMARK 465 GLN A 267 REMARK 465 PRO A 268 REMARK 465 SER A 380 REMARK 465 SER A 381 REMARK 465 ALA A 382 REMARK 465 LEU A 383 REMARK 465 ASP A 471 REMARK 465 SER B -1 REMARK 465 PRO B 263 REMARK 465 LYS B 264 REMARK 465 LYS B 265 REMARK 465 GLY B 266 REMARK 465 GLN B 267 REMARK 465 PRO B 268 REMARK 465 SER B 380 REMARK 465 SER B 381 REMARK 465 ALA B 382 REMARK 465 LEU B 383 REMARK 465 ASP B 471 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A -1 OG REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 28 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 32 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 61 CG CD OE1 OE2 REMARK 470 ASN A 66 CG OD1 ND2 REMARK 470 TYR A 68 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR A 69 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER A 142 OG REMARK 470 LYS A 145 CG CD CE NZ REMARK 470 GLU A 269 CG CD OE1 OE2 REMARK 470 ASN A 270 CG OD1 ND2 REMARK 470 ASN A 358 CG OD1 ND2 REMARK 470 LYS A 362 CG CD CE NZ REMARK 470 ASP A 379 CG OD1 OD2 REMARK 470 LYS A 403 CG CD CE NZ REMARK 470 LYS A 428 CG CD CE NZ REMARK 470 LEU A 429 CG CD1 CD2 REMARK 470 LYS A 431 CG CD CE NZ REMARK 470 ASN A 439 CG OD1 ND2 REMARK 470 LYS A 441 CG CD CE NZ REMARK 470 GLU A 444 CG CD OE1 OE2 REMARK 470 ASP A 445 CG OD1 OD2 REMARK 470 LYS A 452 CG CD CE NZ REMARK 470 LEU A 456 CG CD1 CD2 REMARK 470 HIS B 0 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 32 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 61 CG CD OE1 OE2 REMARK 470 ASN B 66 CG OD1 ND2 REMARK 470 TYR B 68 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR B 69 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER B 142 OG REMARK 470 GLU B 269 CG CD OE1 OE2 REMARK 470 ASN B 270 CG OD1 ND2 REMARK 470 ASN B 358 CG OD1 ND2 REMARK 470 LYS B 362 CG CD CE NZ REMARK 470 ASP B 379 CG OD1 OD2 REMARK 470 LYS B 403 CG CD CE NZ REMARK 470 GLU B 425 CG CD OE1 OE2 REMARK 470 LYS B 431 CG CD CE NZ REMARK 470 VAL B 438 CG1 CG2 REMARK 470 ASN B 439 CG OD1 ND2 REMARK 470 LYS B 441 CG CD CE NZ REMARK 470 GLU B 444 CG CD OE1 OE2 REMARK 470 LYS B 452 CG CD CE NZ REMARK 470 LEU B 456 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 328 OE2 GLU B 410 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 66 59.81 -143.31 REMARK 500 LLP A 244 -116.87 -93.17 REMARK 500 ARG A 247 30.80 72.97 REMARK 500 ASN A 343 -146.98 -137.61 REMARK 500 VAL A 401 -163.20 -115.91 REMARK 500 ASN A 439 52.17 35.27 REMARK 500 LLP B 244 -111.45 -92.61 REMARK 500 ARG B 247 30.97 73.19 REMARK 500 THR B 338 -0.90 71.18 REMARK 500 ASN B 343 -146.46 -141.38 REMARK 500 VAL B 401 -169.96 -116.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 501 DBREF 6UXH A 1 471 UNP K4FZF8 K4FZF8_SOYBN 1 471 DBREF 6UXH B 1 471 UNP K4FZF8 K4FZF8_SOYBN 1 471 SEQADV 6UXH SER A -1 UNP K4FZF8 EXPRESSION TAG SEQADV 6UXH HIS A 0 UNP K4FZF8 EXPRESSION TAG SEQADV 6UXH SER B -1 UNP K4FZF8 EXPRESSION TAG SEQADV 6UXH HIS B 0 UNP K4FZF8 EXPRESSION TAG SEQRES 1 A 473 SER HIS MET ASP PRO VAL SER VAL TRP GLY ASN THR PRO SEQRES 2 A 473 LEU ALA THR VAL ASP PRO GLU ILE HIS ASP LEU ILE GLU SEQRES 3 A 473 LYS GLU LYS ARG ARG GLN CYS ARG GLY ILE GLU LEU ILE SEQRES 4 A 473 ALA SER GLU ASN PHE THR SER PHE ALA VAL ILE GLU ALA SEQRES 5 A 473 LEU GLY SER ALA LEU THR ASN LYS TYR SER GLU GLY MET SEQRES 6 A 473 PRO GLY ASN ARG TYR TYR GLY GLY ASN GLU TYR ILE ASP SEQRES 7 A 473 GLN ILE GLU ASN LEU CYS ARG SER ARG ALA LEU GLN ALA SEQRES 8 A 473 PHE HIS LEU ASP ALA GLN SER TRP GLY VAL ASN VAL GLN SEQRES 9 A 473 PRO TYR SER GLY SER PRO ALA ASN PHE ALA ALA TYR THR SEQRES 10 A 473 ALA VAL LEU ASN PRO HIS ASP ARG ILE MET GLY LEU ASP SEQRES 11 A 473 LEU PRO SER GLY GLY HIS LEU THR HIS GLY TYR TYR THR SEQRES 12 A 473 SER GLY GLY LYS LYS ILE SER ALA THR SER ILE TYR PHE SEQRES 13 A 473 GLU SER LEU PRO TYR LYS VAL ASN SER THR THR GLY TYR SEQRES 14 A 473 ILE ASP TYR ASP ARG LEU GLU GLU LYS ALA LEU ASP PHE SEQRES 15 A 473 ARG PRO LYS LEU ILE ILE CYS GLY GLY SER ALA TYR PRO SEQRES 16 A 473 ARG ASP TRP ASP TYR LYS ARG PHE ARG GLU VAL ALA ASP SEQRES 17 A 473 LYS CYS GLY ALA LEU LEU LEU CYS ASP MET ALA HIS THR SEQRES 18 A 473 SER GLY LEU VAL ALA ALA GLN GLU VAL ASN SER PRO PHE SEQRES 19 A 473 GLU TYR CYS ASP ILE VAL THR THR THR THR HIS LLP SER SEQRES 20 A 473 LEU ARG GLY PRO ARG ALA GLY MET ILE PHE TYR ARG LYS SEQRES 21 A 473 GLY PRO LYS PRO PRO LYS LYS GLY GLN PRO GLU ASN ALA SEQRES 22 A 473 VAL TYR ASP PHE GLU ASP LYS ILE ASN PHE ALA VAL PHE SEQRES 23 A 473 PRO SER LEU GLN GLY GLY PRO HIS ASN HIS GLN ILE GLY SEQRES 24 A 473 ALA LEU ALA VAL ALA LEU LYS GLN ALA ALA SER PRO GLY SEQRES 25 A 473 PHE LYS ALA TYR ALA LYS GLN VAL LYS ALA ASN ALA VAL SEQRES 26 A 473 ALA LEU GLY LYS TYR LEU MET GLY LYS GLY TYR SER LEU SEQRES 27 A 473 VAL THR GLY GLY THR GLU ASN HIS LEU VAL LEU TRP ASP SEQRES 28 A 473 LEU ARG PRO LEU GLY LEU THR GLY ASN LYS VAL GLU LYS SEQRES 29 A 473 LEU CYS ASP LEU CYS ASN ILE THR VAL ASN LYS ASN ALA SEQRES 30 A 473 VAL PHE GLY ASP SER SER ALA LEU ALA PRO GLY GLY VAL SEQRES 31 A 473 ARG ILE GLY ALA PRO ALA MET THR SER ARG GLY LEU VAL SEQRES 32 A 473 GLU LYS ASP PHE GLU GLN ILE GLY GLU PHE LEU HIS ARG SEQRES 33 A 473 ALA VAL THR LEU THR LEU GLU ILE GLN LYS GLU HIS GLY SEQRES 34 A 473 LYS LEU LEU LYS ASP PHE ASN LYS GLY LEU VAL ASN ASN SEQRES 35 A 473 LYS ALA ILE GLU ASP LEU LYS ALA ASP VAL GLU LYS PHE SEQRES 36 A 473 SER ALA LEU PHE ASP MET PRO GLY PHE LEU VAL SER GLU SEQRES 37 A 473 MET LYS TYR LYS ASP SEQRES 1 B 473 SER HIS MET ASP PRO VAL SER VAL TRP GLY ASN THR PRO SEQRES 2 B 473 LEU ALA THR VAL ASP PRO GLU ILE HIS ASP LEU ILE GLU SEQRES 3 B 473 LYS GLU LYS ARG ARG GLN CYS ARG GLY ILE GLU LEU ILE SEQRES 4 B 473 ALA SER GLU ASN PHE THR SER PHE ALA VAL ILE GLU ALA SEQRES 5 B 473 LEU GLY SER ALA LEU THR ASN LYS TYR SER GLU GLY MET SEQRES 6 B 473 PRO GLY ASN ARG TYR TYR GLY GLY ASN GLU TYR ILE ASP SEQRES 7 B 473 GLN ILE GLU ASN LEU CYS ARG SER ARG ALA LEU GLN ALA SEQRES 8 B 473 PHE HIS LEU ASP ALA GLN SER TRP GLY VAL ASN VAL GLN SEQRES 9 B 473 PRO TYR SER GLY SER PRO ALA ASN PHE ALA ALA TYR THR SEQRES 10 B 473 ALA VAL LEU ASN PRO HIS ASP ARG ILE MET GLY LEU ASP SEQRES 11 B 473 LEU PRO SER GLY GLY HIS LEU THR HIS GLY TYR TYR THR SEQRES 12 B 473 SER GLY GLY LYS LYS ILE SER ALA THR SER ILE TYR PHE SEQRES 13 B 473 GLU SER LEU PRO TYR LYS VAL ASN SER THR THR GLY TYR SEQRES 14 B 473 ILE ASP TYR ASP ARG LEU GLU GLU LYS ALA LEU ASP PHE SEQRES 15 B 473 ARG PRO LYS LEU ILE ILE CYS GLY GLY SER ALA TYR PRO SEQRES 16 B 473 ARG ASP TRP ASP TYR LYS ARG PHE ARG GLU VAL ALA ASP SEQRES 17 B 473 LYS CYS GLY ALA LEU LEU LEU CYS ASP MET ALA HIS THR SEQRES 18 B 473 SER GLY LEU VAL ALA ALA GLN GLU VAL ASN SER PRO PHE SEQRES 19 B 473 GLU TYR CYS ASP ILE VAL THR THR THR THR HIS LLP SER SEQRES 20 B 473 LEU ARG GLY PRO ARG ALA GLY MET ILE PHE TYR ARG LYS SEQRES 21 B 473 GLY PRO LYS PRO PRO LYS LYS GLY GLN PRO GLU ASN ALA SEQRES 22 B 473 VAL TYR ASP PHE GLU ASP LYS ILE ASN PHE ALA VAL PHE SEQRES 23 B 473 PRO SER LEU GLN GLY GLY PRO HIS ASN HIS GLN ILE GLY SEQRES 24 B 473 ALA LEU ALA VAL ALA LEU LYS GLN ALA ALA SER PRO GLY SEQRES 25 B 473 PHE LYS ALA TYR ALA LYS GLN VAL LYS ALA ASN ALA VAL SEQRES 26 B 473 ALA LEU GLY LYS TYR LEU MET GLY LYS GLY TYR SER LEU SEQRES 27 B 473 VAL THR GLY GLY THR GLU ASN HIS LEU VAL LEU TRP ASP SEQRES 28 B 473 LEU ARG PRO LEU GLY LEU THR GLY ASN LYS VAL GLU LYS SEQRES 29 B 473 LEU CYS ASP LEU CYS ASN ILE THR VAL ASN LYS ASN ALA SEQRES 30 B 473 VAL PHE GLY ASP SER SER ALA LEU ALA PRO GLY GLY VAL SEQRES 31 B 473 ARG ILE GLY ALA PRO ALA MET THR SER ARG GLY LEU VAL SEQRES 32 B 473 GLU LYS ASP PHE GLU GLN ILE GLY GLU PHE LEU HIS ARG SEQRES 33 B 473 ALA VAL THR LEU THR LEU GLU ILE GLN LYS GLU HIS GLY SEQRES 34 B 473 LYS LEU LEU LYS ASP PHE ASN LYS GLY LEU VAL ASN ASN SEQRES 35 B 473 LYS ALA ILE GLU ASP LEU LYS ALA ASP VAL GLU LYS PHE SEQRES 36 B 473 SER ALA LEU PHE ASP MET PRO GLY PHE LEU VAL SER GLU SEQRES 37 B 473 MET LYS TYR LYS ASP MODRES 6UXH LLP A 244 LYS MODIFIED RESIDUE MODRES 6UXH LLP B 244 LYS MODIFIED RESIDUE HET LLP A 244 24 HET LLP B 244 24 HET EDO B 501 4 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 1 LLP 2(C14 H22 N3 O7 P) FORMUL 3 EDO C2 H6 O2 FORMUL 4 HOH *382(H2 O) HELIX 1 AA1 PRO A 3 ASN A 9 1 7 HELIX 2 AA2 PRO A 11 ASP A 16 1 6 HELIX 3 AA3 ASP A 16 GLY A 33 1 18 HELIX 4 AA4 SER A 44 GLY A 52 1 9 HELIX 5 AA5 SER A 53 LYS A 58 5 6 HELIX 6 AA6 ASN A 72 PHE A 90 1 19 HELIX 7 AA7 SER A 105 LEU A 118 1 14 HELIX 8 AA8 HIS A 134 GLY A 138 5 5 HELIX 9 AA9 SER A 148 PHE A 154 1 7 HELIX 10 AB1 ASP A 169 ARG A 181 1 13 HELIX 11 AB2 ASP A 197 GLY A 209 1 13 HELIX 12 AB3 THR A 219 ALA A 225 1 7 HELIX 13 AB4 SER A 230 TYR A 234 5 5 HELIX 14 AB5 ASP A 274 PHE A 284 1 11 HELIX 15 AB6 HIS A 292 ALA A 307 1 16 HELIX 16 AB7 SER A 308 LYS A 332 1 25 HELIX 17 AB8 THR A 338 GLY A 340 5 3 HELIX 18 AB9 ARG A 351 GLY A 354 5 4 HELIX 19 AC1 THR A 356 CYS A 367 1 12 HELIX 20 AC2 ALA A 392 ARG A 398 1 7 HELIX 21 AC3 VAL A 401 GLY A 427 1 27 HELIX 22 AC4 LEU A 429 GLY A 436 1 8 HELIX 23 AC5 ASN A 440 ALA A 455 1 16 HELIX 24 AC6 LEU A 463 MET A 467 5 5 HELIX 25 AC7 PRO B 3 ASN B 9 1 7 HELIX 26 AC8 PRO B 11 ASP B 16 1 6 HELIX 27 AC9 ASP B 16 ARG B 32 1 17 HELIX 28 AD1 SER B 44 GLY B 52 1 9 HELIX 29 AD2 SER B 53 LYS B 58 5 6 HELIX 30 AD3 ASN B 72 PHE B 90 1 19 HELIX 31 AD4 SER B 105 LEU B 118 1 14 HELIX 32 AD5 LEU B 129 GLY B 132 5 4 HELIX 33 AD6 HIS B 134 GLY B 138 5 5 HELIX 34 AD7 SER B 148 PHE B 154 1 7 HELIX 35 AD8 ASP B 169 ARG B 181 1 13 HELIX 36 AD9 ASP B 197 GLY B 209 1 13 HELIX 37 AE1 THR B 219 ALA B 225 1 7 HELIX 38 AE2 SER B 230 TYR B 234 5 5 HELIX 39 AE3 ASP B 274 PHE B 284 1 11 HELIX 40 AE4 HIS B 292 ALA B 307 1 16 HELIX 41 AE5 SER B 308 GLY B 331 1 24 HELIX 42 AE6 THR B 338 GLY B 340 5 3 HELIX 43 AE7 ARG B 351 GLY B 354 5 4 HELIX 44 AE8 THR B 356 CYS B 367 1 12 HELIX 45 AE9 ALA B 392 ARG B 398 1 7 HELIX 46 AF1 VAL B 401 GLY B 427 1 27 HELIX 47 AF2 LEU B 429 GLY B 436 1 8 HELIX 48 AF3 ASN B 440 ALA B 455 1 16 HELIX 49 AF4 LEU B 463 MET B 467 5 5 SHEET 1 AA1 2 ILE A 34 GLU A 35 0 SHEET 2 AA1 2 ILE A 369 THR A 370 1 O THR A 370 N ILE A 34 SHEET 1 AA2 2 GLY A 62 MET A 63 0 SHEET 2 AA2 2 ASN A 66 ARG A 67 -1 O ASN A 66 N MET A 63 SHEET 1 AA3 7 TRP A 97 ASN A 100 0 SHEET 2 AA3 7 GLY A 252 ARG A 257 -1 O TYR A 256 N GLY A 98 SHEET 3 AA3 7 ILE A 237 THR A 241 -1 N VAL A 238 O PHE A 255 SHEET 4 AA3 7 LEU A 211 ASP A 215 1 N CYS A 214 O THR A 239 SHEET 5 AA3 7 LEU A 184 CYS A 187 1 N CYS A 187 O ASP A 215 SHEET 6 AA3 7 ARG A 123 LEU A 127 1 N MET A 125 O ILE A 186 SHEET 7 AA3 7 GLU A 155 TYR A 159 1 O GLU A 155 N ILE A 124 SHEET 1 AA4 4 SER A 335 LEU A 336 0 SHEET 2 AA4 4 LEU A 345 ASP A 349 -1 O ASP A 349 N SER A 335 SHEET 3 AA4 4 GLY A 387 GLY A 391 -1 O ILE A 390 N VAL A 346 SHEET 4 AA4 4 ASN A 372 ASN A 374 -1 N ASN A 372 O ARG A 389 SHEET 1 AA5 2 ILE B 34 GLU B 35 0 SHEET 2 AA5 2 ILE B 369 THR B 370 1 O THR B 370 N ILE B 34 SHEET 1 AA6 2 GLY B 62 MET B 63 0 SHEET 2 AA6 2 ASN B 66 ARG B 67 -1 O ASN B 66 N MET B 63 SHEET 1 AA7 7 TRP B 97 ASN B 100 0 SHEET 2 AA7 7 GLY B 252 ARG B 257 -1 O TYR B 256 N GLY B 98 SHEET 3 AA7 7 ILE B 237 THR B 241 -1 N VAL B 238 O PHE B 255 SHEET 4 AA7 7 LEU B 211 ASP B 215 1 N CYS B 214 O THR B 239 SHEET 5 AA7 7 LEU B 184 CYS B 187 1 N ILE B 185 O LEU B 213 SHEET 6 AA7 7 ARG B 123 LEU B 127 1 N MET B 125 O ILE B 186 SHEET 7 AA7 7 GLU B 155 TYR B 159 1 O GLU B 155 N ILE B 124 SHEET 1 AA8 4 SER B 335 LEU B 336 0 SHEET 2 AA8 4 LEU B 345 ASP B 349 -1 O ASP B 349 N SER B 335 SHEET 3 AA8 4 GLY B 387 GLY B 391 -1 O VAL B 388 N TRP B 348 SHEET 4 AA8 4 ASN B 372 ASN B 374 -1 N ASN B 372 O ARG B 389 LINK C HIS A 243 N LLP A 244 1555 1555 1.32 LINK C LLP A 244 N SER A 245 1555 1555 1.33 LINK C HIS B 243 N LLP B 244 1555 1555 1.33 LINK C LLP B 244 N SER B 245 1555 1555 1.33 CISPEP 1 PHE A 284 PRO A 285 0 10.51 CISPEP 2 PHE B 284 PRO B 285 0 12.30 SITE 1 AC1 6 GLY A 52 HOH A 613 GLY B 52 HOH B 604 SITE 2 AC1 6 HOH B 638 HOH B 661 CRYST1 55.640 126.820 128.570 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017973 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007885 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007778 0.00000