HEADER PLANT PROTEIN, TRANSFERASE 07-NOV-19 6UXI TITLE STRUCTURE OF SERINE HYDROXYMETHYLTRANSFERASE 8 FROM GLYCINE MAX TITLE 2 CULTIVAR ESSEX COMPLEXED WITH PLP-GLYCINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE HYDROXYMETHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.1.2.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GLYCINE MAX; SOURCE 3 ORGANISM_COMMON: SOYBEAN; SOURCE 4 ORGANISM_TAXID: 3847; SOURCE 5 GENE: SHMT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FOLATE METABOLISM, METHYLTRANSFERASE, SOYBEAN CYST, NEMATODE KEYWDS 2 INFECTION RESISTANCE, CYTOPLASMIC ENZYME, PLANT PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.A.KORASICK,J.J.TANNER,L.J.BEAMER REVDAT 4 11-OCT-23 6UXI 1 REMARK REVDAT 3 25-MAR-20 6UXI 1 JRNL REVDAT 2 19-FEB-20 6UXI 1 JRNL REVDAT 1 12-FEB-20 6UXI 0 JRNL AUTH D.A.KORASICK,P.K.KANDOTH,J.J.TANNER,M.G.MITCHUM,L.J.BEAMER JRNL TITL IMPAIRED FOLATE BINDING OF SERINE HYDROXYMETHYLTRANSFERASE 8 JRNL TITL 2 FROM SOYBEAN UNDERLIES RESISTANCE TO THE SOYBEAN CYST JRNL TITL 3 NEMATODE. JRNL REF J.BIOL.CHEM. V. 295 3708 2020 JRNL REFN ESSN 1083-351X JRNL PMID 32014996 JRNL DOI 10.1074/JBC.RA119.012256 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 53842 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 2665 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.8390 - 5.6008 1.00 2919 148 0.1561 0.2161 REMARK 3 2 5.6008 - 4.4466 1.00 2799 128 0.1434 0.1494 REMARK 3 3 4.4466 - 3.8848 1.00 2755 137 0.1384 0.1800 REMARK 3 4 3.8848 - 3.5297 0.99 2692 146 0.1529 0.1730 REMARK 3 5 3.5297 - 3.2768 1.00 2728 145 0.1726 0.2044 REMARK 3 6 3.2768 - 3.0836 1.00 2694 152 0.1848 0.2150 REMARK 3 7 3.0836 - 2.9292 1.00 2721 127 0.1833 0.2452 REMARK 3 8 2.9292 - 2.8017 1.00 2645 172 0.1954 0.2635 REMARK 3 9 2.8017 - 2.6939 1.00 2674 154 0.2055 0.2546 REMARK 3 10 2.6939 - 2.6009 1.00 2668 162 0.2099 0.2541 REMARK 3 11 2.6009 - 2.5196 1.00 2676 164 0.2137 0.2668 REMARK 3 12 2.5196 - 2.4476 1.00 2657 140 0.2188 0.2627 REMARK 3 13 2.4476 - 2.3832 1.00 2698 131 0.2179 0.2788 REMARK 3 14 2.3832 - 2.3250 1.00 2679 128 0.2340 0.2502 REMARK 3 15 2.3250 - 2.2722 0.99 2648 128 0.2713 0.3033 REMARK 3 16 2.2722 - 2.2238 0.95 2573 127 0.3622 0.4035 REMARK 3 17 2.2238 - 2.1793 1.00 2660 130 0.2984 0.3284 REMARK 3 18 2.1793 - 2.1382 1.00 2673 115 0.2997 0.3537 REMARK 3 19 2.1382 - 2.1000 0.99 2618 131 0.3113 0.3442 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID -1 THROUGH 470) REMARK 3 ORIGIN FOR THE GROUP (A): -14.7478 -9.0568 30.2892 REMARK 3 T TENSOR REMARK 3 T11: 0.2115 T22: 0.2913 REMARK 3 T33: 0.2119 T12: -0.0083 REMARK 3 T13: 0.0322 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.7547 L22: 1.8711 REMARK 3 L33: 1.0091 L12: -0.1958 REMARK 3 L13: 0.2577 L23: 0.3406 REMARK 3 S TENSOR REMARK 3 S11: 0.0036 S12: -0.2069 S13: 0.0327 REMARK 3 S21: 0.2313 S22: 0.0131 S23: -0.0121 REMARK 3 S31: 0.0108 S32: -0.0734 S33: -0.0111 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 0 THROUGH 471) REMARK 3 ORIGIN FOR THE GROUP (A): -13.8746 -30.2551 8.8690 REMARK 3 T TENSOR REMARK 3 T11: 0.2096 T22: 0.2257 REMARK 3 T33: 0.2626 T12: 0.0307 REMARK 3 T13: -0.0127 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 0.7664 L22: 1.4870 REMARK 3 L33: 1.6618 L12: 0.2638 REMARK 3 L13: -0.0084 L23: 0.2522 REMARK 3 S TENSOR REMARK 3 S11: 0.0466 S12: 0.0069 S13: -0.1449 REMARK 3 S21: -0.0665 S22: -0.0180 S23: -0.0324 REMARK 3 S31: 0.1976 S32: -0.0305 S33: -0.0254 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 0 THROUGH 65 OR RESID REMARK 3 67 THROUGH 144 OR (RESID 145 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )) OR RESID 146 THROUGH 701 OR RESID 801)) REMARK 3 SELECTION : (CHAIN B AND ((RESID 0 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 1 THROUGH 65 OR RESID 67 THROUGH REMARK 3 263 OR (RESID 269 THROUGH 271 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )) OR RESID 272 THROUGH 402 OR (RESID 403 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 404 THROUGH 423 REMARK 3 OR (RESID 424 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 425 THROUGH 427 OR (RESID 428 AND (NAME N REMARK 3 OR NAME CA OR NAME C OR NAME O OR NAME CB REMARK 3 )) OR RESID 429 THROUGH 430 OR (RESID 431 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB )) OR RESID 432 THROUGH 470 REMARK 3 OR RESID 801 OR RESID 901)) REMARK 3 ATOM PAIRS NUMBER : 4276 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UXI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1000245300. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.3 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54101 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 47.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.14400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 1.82800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6UXH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.19 M TRIMETHYLAMINE N-OXIDE, 0.1 M REMARK 280 TRIS (PH 8.5), 21% (W/V) PEG MME 2000, 20 MM GLYCINE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.27350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.56250 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 62.27350 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.56250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 264 REMARK 465 LYS A 265 REMARK 465 GLY A 266 REMARK 465 GLN A 267 REMARK 465 PRO A 268 REMARK 465 ASP A 379 REMARK 465 SER A 380 REMARK 465 SER A 381 REMARK 465 ALA A 382 REMARK 465 LEU A 383 REMARK 465 ASP A 471 REMARK 465 SER B -1 REMARK 465 LYS B 264 REMARK 465 LYS B 265 REMARK 465 GLY B 266 REMARK 465 GLN B 267 REMARK 465 ASP B 379 REMARK 465 SER B 380 REMARK 465 SER B 381 REMARK 465 ALA B 382 REMARK 465 LEU B 383 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A -1 OG REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 207 CG CD CE NZ REMARK 470 GLU A 269 CG CD OE1 OE2 REMARK 470 ASN A 270 CG OD1 ND2 REMARK 470 LYS A 362 CG CD CE NZ REMARK 470 LYS A 403 CG CD CE NZ REMARK 470 LYS A 424 CG CD CE NZ REMARK 470 LYS A 428 CG CD CE NZ REMARK 470 LYS A 431 CG CD CE NZ REMARK 470 LYS A 441 CG CD CE NZ REMARK 470 LYS A 452 CG CD CE NZ REMARK 470 LYS B 145 CG CD CE NZ REMARK 470 LYS B 207 CG CD CE NZ REMARK 470 GLU B 269 CG CD OE1 OE2 REMARK 470 LYS B 362 CG CD CE NZ REMARK 470 LYS B 441 CG CD CE NZ REMARK 470 LYS B 452 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 21 OH TYR B 469 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 60 56.02 -146.12 REMARK 500 SER A 105 -168.71 -162.09 REMARK 500 ILE A 147 -63.17 -91.75 REMARK 500 ALA A 191 27.49 -140.43 REMARK 500 LYS A 244 -116.69 -91.47 REMARK 500 ASN A 270 49.63 -95.75 REMARK 500 ASN A 343 -140.69 -135.66 REMARK 500 PHE A 377 104.68 -57.10 REMARK 500 VAL A 401 -164.49 -120.31 REMARK 500 SER B 60 56.83 -146.80 REMARK 500 ASN B 66 49.20 -149.92 REMARK 500 ASN B 66 49.56 -150.06 REMARK 500 SER B 105 -169.42 -161.29 REMARK 500 ILE B 147 -62.58 -90.39 REMARK 500 ALA B 191 27.60 -140.21 REMARK 500 LYS B 244 -117.36 -91.16 REMARK 500 GLU B 269 -159.65 60.92 REMARK 500 ASN B 270 52.62 -95.05 REMARK 500 ASN B 343 -140.91 -135.76 REMARK 500 PHE B 377 104.72 -56.99 REMARK 500 VAL B 401 -164.47 -119.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLG A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLG B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 802 DBREF 6UXI A 1 471 UNP K4FZF8 K4FZF8_SOYBN 1 471 DBREF 6UXI B 1 471 UNP K4FZF8 K4FZF8_SOYBN 1 471 SEQADV 6UXI SER A -1 UNP K4FZF8 EXPRESSION TAG SEQADV 6UXI HIS A 0 UNP K4FZF8 EXPRESSION TAG SEQADV 6UXI SER B -1 UNP K4FZF8 EXPRESSION TAG SEQADV 6UXI HIS B 0 UNP K4FZF8 EXPRESSION TAG SEQRES 1 A 473 SER HIS MET ASP PRO VAL SER VAL TRP GLY ASN THR PRO SEQRES 2 A 473 LEU ALA THR VAL ASP PRO GLU ILE HIS ASP LEU ILE GLU SEQRES 3 A 473 LYS GLU LYS ARG ARG GLN CYS ARG GLY ILE GLU LEU ILE SEQRES 4 A 473 ALA SER GLU ASN PHE THR SER PHE ALA VAL ILE GLU ALA SEQRES 5 A 473 LEU GLY SER ALA LEU THR ASN LYS TYR SER GLU GLY MET SEQRES 6 A 473 PRO GLY ASN ARG TYR TYR GLY GLY ASN GLU TYR ILE ASP SEQRES 7 A 473 GLN ILE GLU ASN LEU CYS ARG SER ARG ALA LEU GLN ALA SEQRES 8 A 473 PHE HIS LEU ASP ALA GLN SER TRP GLY VAL ASN VAL GLN SEQRES 9 A 473 PRO TYR SER GLY SER PRO ALA ASN PHE ALA ALA TYR THR SEQRES 10 A 473 ALA VAL LEU ASN PRO HIS ASP ARG ILE MET GLY LEU ASP SEQRES 11 A 473 LEU PRO SER GLY GLY HIS LEU THR HIS GLY TYR TYR THR SEQRES 12 A 473 SER GLY GLY LYS LYS ILE SER ALA THR SER ILE TYR PHE SEQRES 13 A 473 GLU SER LEU PRO TYR LYS VAL ASN SER THR THR GLY TYR SEQRES 14 A 473 ILE ASP TYR ASP ARG LEU GLU GLU LYS ALA LEU ASP PHE SEQRES 15 A 473 ARG PRO LYS LEU ILE ILE CYS GLY GLY SER ALA TYR PRO SEQRES 16 A 473 ARG ASP TRP ASP TYR LYS ARG PHE ARG GLU VAL ALA ASP SEQRES 17 A 473 LYS CYS GLY ALA LEU LEU LEU CYS ASP MET ALA HIS THR SEQRES 18 A 473 SER GLY LEU VAL ALA ALA GLN GLU VAL ASN SER PRO PHE SEQRES 19 A 473 GLU TYR CYS ASP ILE VAL THR THR THR THR HIS LYS SER SEQRES 20 A 473 LEU ARG GLY PRO ARG ALA GLY MET ILE PHE TYR ARG LYS SEQRES 21 A 473 GLY PRO LYS PRO PRO LYS LYS GLY GLN PRO GLU ASN ALA SEQRES 22 A 473 VAL TYR ASP PHE GLU ASP LYS ILE ASN PHE ALA VAL PHE SEQRES 23 A 473 PRO SER LEU GLN GLY GLY PRO HIS ASN HIS GLN ILE GLY SEQRES 24 A 473 ALA LEU ALA VAL ALA LEU LYS GLN ALA ALA SER PRO GLY SEQRES 25 A 473 PHE LYS ALA TYR ALA LYS GLN VAL LYS ALA ASN ALA VAL SEQRES 26 A 473 ALA LEU GLY LYS TYR LEU MET GLY LYS GLY TYR SER LEU SEQRES 27 A 473 VAL THR GLY GLY THR GLU ASN HIS LEU VAL LEU TRP ASP SEQRES 28 A 473 LEU ARG PRO LEU GLY LEU THR GLY ASN LYS VAL GLU LYS SEQRES 29 A 473 LEU CYS ASP LEU CYS ASN ILE THR VAL ASN LYS ASN ALA SEQRES 30 A 473 VAL PHE GLY ASP SER SER ALA LEU ALA PRO GLY GLY VAL SEQRES 31 A 473 ARG ILE GLY ALA PRO ALA MET THR SER ARG GLY LEU VAL SEQRES 32 A 473 GLU LYS ASP PHE GLU GLN ILE GLY GLU PHE LEU HIS ARG SEQRES 33 A 473 ALA VAL THR LEU THR LEU GLU ILE GLN LYS GLU HIS GLY SEQRES 34 A 473 LYS LEU LEU LYS ASP PHE ASN LYS GLY LEU VAL ASN ASN SEQRES 35 A 473 LYS ALA ILE GLU ASP LEU LYS ALA ASP VAL GLU LYS PHE SEQRES 36 A 473 SER ALA LEU PHE ASP MET PRO GLY PHE LEU VAL SER GLU SEQRES 37 A 473 MET LYS TYR LYS ASP SEQRES 1 B 473 SER HIS MET ASP PRO VAL SER VAL TRP GLY ASN THR PRO SEQRES 2 B 473 LEU ALA THR VAL ASP PRO GLU ILE HIS ASP LEU ILE GLU SEQRES 3 B 473 LYS GLU LYS ARG ARG GLN CYS ARG GLY ILE GLU LEU ILE SEQRES 4 B 473 ALA SER GLU ASN PHE THR SER PHE ALA VAL ILE GLU ALA SEQRES 5 B 473 LEU GLY SER ALA LEU THR ASN LYS TYR SER GLU GLY MET SEQRES 6 B 473 PRO GLY ASN ARG TYR TYR GLY GLY ASN GLU TYR ILE ASP SEQRES 7 B 473 GLN ILE GLU ASN LEU CYS ARG SER ARG ALA LEU GLN ALA SEQRES 8 B 473 PHE HIS LEU ASP ALA GLN SER TRP GLY VAL ASN VAL GLN SEQRES 9 B 473 PRO TYR SER GLY SER PRO ALA ASN PHE ALA ALA TYR THR SEQRES 10 B 473 ALA VAL LEU ASN PRO HIS ASP ARG ILE MET GLY LEU ASP SEQRES 11 B 473 LEU PRO SER GLY GLY HIS LEU THR HIS GLY TYR TYR THR SEQRES 12 B 473 SER GLY GLY LYS LYS ILE SER ALA THR SER ILE TYR PHE SEQRES 13 B 473 GLU SER LEU PRO TYR LYS VAL ASN SER THR THR GLY TYR SEQRES 14 B 473 ILE ASP TYR ASP ARG LEU GLU GLU LYS ALA LEU ASP PHE SEQRES 15 B 473 ARG PRO LYS LEU ILE ILE CYS GLY GLY SER ALA TYR PRO SEQRES 16 B 473 ARG ASP TRP ASP TYR LYS ARG PHE ARG GLU VAL ALA ASP SEQRES 17 B 473 LYS CYS GLY ALA LEU LEU LEU CYS ASP MET ALA HIS THR SEQRES 18 B 473 SER GLY LEU VAL ALA ALA GLN GLU VAL ASN SER PRO PHE SEQRES 19 B 473 GLU TYR CYS ASP ILE VAL THR THR THR THR HIS LYS SER SEQRES 20 B 473 LEU ARG GLY PRO ARG ALA GLY MET ILE PHE TYR ARG LYS SEQRES 21 B 473 GLY PRO LYS PRO PRO LYS LYS GLY GLN PRO GLU ASN ALA SEQRES 22 B 473 VAL TYR ASP PHE GLU ASP LYS ILE ASN PHE ALA VAL PHE SEQRES 23 B 473 PRO SER LEU GLN GLY GLY PRO HIS ASN HIS GLN ILE GLY SEQRES 24 B 473 ALA LEU ALA VAL ALA LEU LYS GLN ALA ALA SER PRO GLY SEQRES 25 B 473 PHE LYS ALA TYR ALA LYS GLN VAL LYS ALA ASN ALA VAL SEQRES 26 B 473 ALA LEU GLY LYS TYR LEU MET GLY LYS GLY TYR SER LEU SEQRES 27 B 473 VAL THR GLY GLY THR GLU ASN HIS LEU VAL LEU TRP ASP SEQRES 28 B 473 LEU ARG PRO LEU GLY LEU THR GLY ASN LYS VAL GLU LYS SEQRES 29 B 473 LEU CYS ASP LEU CYS ASN ILE THR VAL ASN LYS ASN ALA SEQRES 30 B 473 VAL PHE GLY ASP SER SER ALA LEU ALA PRO GLY GLY VAL SEQRES 31 B 473 ARG ILE GLY ALA PRO ALA MET THR SER ARG GLY LEU VAL SEQRES 32 B 473 GLU LYS ASP PHE GLU GLN ILE GLY GLU PHE LEU HIS ARG SEQRES 33 B 473 ALA VAL THR LEU THR LEU GLU ILE GLN LYS GLU HIS GLY SEQRES 34 B 473 LYS LEU LEU LYS ASP PHE ASN LYS GLY LEU VAL ASN ASN SEQRES 35 B 473 LYS ALA ILE GLU ASP LEU LYS ALA ASP VAL GLU LYS PHE SEQRES 36 B 473 SER ALA LEU PHE ASP MET PRO GLY PHE LEU VAL SER GLU SEQRES 37 B 473 MET LYS TYR LYS ASP HET PLG A 701 20 HET EDO A 702 4 HET PLG B 801 20 HET EDO B 802 4 HETNAM PLG N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL- HETNAM 2 PLG PYRIDIN-4-YL-METHANE] HETNAM EDO 1,2-ETHANEDIOL HETSYN PLG N-PYRIDOXYL-GLYCINE-5-MONOPHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 PLG 2(C10 H15 N2 O7 P) FORMUL 4 EDO 2(C2 H6 O2) FORMUL 7 HOH *269(H2 O) HELIX 1 AA1 PRO A 3 GLY A 8 1 6 HELIX 2 AA2 PRO A 11 ASP A 16 1 6 HELIX 3 AA3 ASP A 16 ARG A 32 1 17 HELIX 4 AA4 SER A 44 GLY A 52 1 9 HELIX 5 AA5 SER A 53 LYS A 58 5 6 HELIX 6 AA6 ASN A 72 PHE A 90 1 19 HELIX 7 AA7 SER A 105 LEU A 118 1 14 HELIX 8 AA8 LEU A 129 GLY A 132 5 4 HELIX 9 AA9 HIS A 134 GLY A 138 5 5 HELIX 10 AB1 SER A 148 PHE A 154 1 7 HELIX 11 AB2 ASP A 169 ARG A 181 1 13 HELIX 12 AB3 ASP A 197 GLY A 209 1 13 HELIX 13 AB4 THR A 219 ALA A 225 1 7 HELIX 14 AB5 SER A 230 TYR A 234 5 5 HELIX 15 AB6 PHE A 275 PHE A 284 1 10 HELIX 16 AB7 HIS A 292 ALA A 307 1 16 HELIX 17 AB8 SER A 308 LYS A 332 1 25 HELIX 18 AB9 THR A 338 GLY A 340 5 3 HELIX 19 AC1 ARG A 351 GLY A 354 5 4 HELIX 20 AC2 THR A 356 CYS A 367 1 12 HELIX 21 AC3 ALA A 392 ARG A 398 1 7 HELIX 22 AC4 VAL A 401 GLY A 427 1 27 HELIX 23 AC5 LEU A 429 GLY A 436 1 8 HELIX 24 AC6 ASN A 440 ALA A 455 1 16 HELIX 25 AC7 LEU A 463 MET A 467 5 5 HELIX 26 AC8 PRO B 3 GLY B 8 1 6 HELIX 27 AC9 PRO B 11 ASP B 16 1 6 HELIX 28 AD1 ASP B 16 ARG B 32 1 17 HELIX 29 AD2 SER B 44 GLY B 52 1 9 HELIX 30 AD3 SER B 53 LYS B 58 5 6 HELIX 31 AD4 ASN B 72 PHE B 90 1 19 HELIX 32 AD5 SER B 105 LEU B 118 1 14 HELIX 33 AD6 LEU B 129 GLY B 132 5 4 HELIX 34 AD7 HIS B 134 GLY B 138 5 5 HELIX 35 AD8 SER B 148 PHE B 154 1 7 HELIX 36 AD9 ASP B 169 ARG B 181 1 13 HELIX 37 AE1 ASP B 197 GLY B 209 1 13 HELIX 38 AE2 THR B 219 ALA B 225 1 7 HELIX 39 AE3 SER B 230 TYR B 234 5 5 HELIX 40 AE4 PHE B 275 PHE B 284 1 10 HELIX 41 AE5 HIS B 292 ALA B 307 1 16 HELIX 42 AE6 SER B 308 LYS B 332 1 25 HELIX 43 AE7 THR B 338 GLY B 340 5 3 HELIX 44 AE8 ARG B 351 GLY B 354 5 4 HELIX 45 AE9 THR B 356 CYS B 367 1 12 HELIX 46 AF1 ALA B 392 ARG B 398 1 7 HELIX 47 AF2 VAL B 401 GLY B 427 1 27 HELIX 48 AF3 LEU B 429 GLY B 436 1 8 HELIX 49 AF4 ASN B 440 ALA B 455 1 16 HELIX 50 AF5 LEU B 463 MET B 467 5 5 SHEET 1 AA1 2 ILE A 34 GLU A 35 0 SHEET 2 AA1 2 ILE A 369 THR A 370 1 O THR A 370 N ILE A 34 SHEET 1 AA2 2 GLY A 62 MET A 63 0 SHEET 2 AA2 2 ASN A 66 ARG A 67 -1 O ASN A 66 N MET A 63 SHEET 1 AA3 7 TRP A 97 ASN A 100 0 SHEET 2 AA3 7 GLY A 252 ARG A 257 -1 O TYR A 256 N GLY A 98 SHEET 3 AA3 7 ILE A 237 THR A 241 -1 N VAL A 238 O PHE A 255 SHEET 4 AA3 7 LEU A 211 ASP A 215 1 N CYS A 214 O THR A 239 SHEET 5 AA3 7 LEU A 184 CYS A 187 1 N CYS A 187 O ASP A 215 SHEET 6 AA3 7 ARG A 123 LEU A 127 1 N MET A 125 O ILE A 186 SHEET 7 AA3 7 GLU A 155 TYR A 159 1 O GLU A 155 N ILE A 124 SHEET 1 AA4 4 SER A 335 LEU A 336 0 SHEET 2 AA4 4 LEU A 345 ASP A 349 -1 O ASP A 349 N SER A 335 SHEET 3 AA4 4 GLY A 387 GLY A 391 -1 O VAL A 388 N TRP A 348 SHEET 4 AA4 4 ASN A 372 ASN A 374 -1 N ASN A 374 O GLY A 387 SHEET 1 AA5 2 ILE B 34 GLU B 35 0 SHEET 2 AA5 2 ILE B 369 THR B 370 1 O THR B 370 N ILE B 34 SHEET 1 AA6 2 GLY B 62 MET B 63 0 SHEET 2 AA6 2 ASN B 66 ARG B 67 -1 O ASN B 66 N MET B 63 SHEET 1 AA7 7 TRP B 97 ASN B 100 0 SHEET 2 AA7 7 GLY B 252 ARG B 257 -1 O TYR B 256 N GLY B 98 SHEET 3 AA7 7 ILE B 237 THR B 241 -1 N VAL B 238 O PHE B 255 SHEET 4 AA7 7 LEU B 211 ASP B 215 1 N CYS B 214 O THR B 239 SHEET 5 AA7 7 LEU B 184 CYS B 187 1 N CYS B 187 O ASP B 215 SHEET 6 AA7 7 ARG B 123 LEU B 127 1 N MET B 125 O ILE B 186 SHEET 7 AA7 7 GLU B 155 TYR B 159 1 O GLU B 155 N ILE B 124 SHEET 1 AA8 4 SER B 335 LEU B 336 0 SHEET 2 AA8 4 LEU B 345 ASP B 349 -1 O ASP B 349 N SER B 335 SHEET 3 AA8 4 GLY B 387 GLY B 391 -1 O VAL B 388 N TRP B 348 SHEET 4 AA8 4 ASN B 372 ASN B 374 -1 N ASN B 372 O ARG B 389 CISPEP 1 PHE A 284 PRO A 285 0 9.93 CISPEP 2 PHE B 284 PRO B 285 0 9.83 SITE 1 AC1 19 SER A 39 SER A 105 GLY A 106 SER A 107 SITE 2 AC1 19 HIS A 134 GLY A 189 SER A 190 ASP A 215 SITE 3 AC1 19 ALA A 217 HIS A 218 THR A 241 HIS A 243 SITE 4 AC1 19 LYS A 244 ARG A 389 TYR B 59 TYR B 104 SITE 5 AC1 19 GLY B 289 GLY B 290 HOH B 959 SITE 1 AC2 6 ILE A 48 GLU A 49 GLY A 52 HOH A 819 SITE 2 AC2 6 GLY B 52 HOH B 973 SITE 1 AC3 18 TYR A 59 GLY A 289 GLY A 290 SER B 39 SITE 2 AC3 18 SER B 105 GLY B 106 SER B 107 HIS B 134 SITE 3 AC3 18 GLY B 189 SER B 190 ASP B 215 ALA B 217 SITE 4 AC3 18 HIS B 218 THR B 241 HIS B 243 LYS B 244 SITE 5 AC3 18 ARG B 389 HOH B 984 SITE 1 AC4 4 LYS A 176 ASP A 179 LYS B 176 ASP B 179 CRYST1 56.567 124.547 129.125 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017678 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008029 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007744 0.00000