HEADER PLANT PROTEIN, TRANSFERASE 07-NOV-19 6UXL TITLE STRUCTURE OF SERINE HYDROXYMETHYLTRANSFERASE 8 FROM GLYCINE MAX TITLE 2 CULTIVAR FORREST COMPLEXED WITH PLP-GLYCINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE HYDROXYMETHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.1.2.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GLYCINE MAX; SOURCE 3 ORGANISM_COMMON: SOYBEAN; SOURCE 4 ORGANISM_TAXID: 3847; SOURCE 5 GENE: SHMT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FOLATE METABOLISM, METHYLTRANSFERASE, SOYBEAN CYST, NEMATODE KEYWDS 2 INFECTION RESISTANCE, CYTOPLASMIC ENZYME, PLANT PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.A.KORASICK,J.J.TANNER,L.J.BEAMER REVDAT 4 11-OCT-23 6UXL 1 REMARK REVDAT 3 25-MAR-20 6UXL 1 JRNL REVDAT 2 19-FEB-20 6UXL 1 JRNL REVDAT 1 12-FEB-20 6UXL 0 JRNL AUTH D.A.KORASICK,P.K.KANDOTH,J.J.TANNER,M.G.MITCHUM,L.J.BEAMER JRNL TITL IMPAIRED FOLATE BINDING OF SERINE HYDROXYMETHYLTRANSFERASE 8 JRNL TITL 2 FROM SOYBEAN UNDERLIES RESISTANCE TO THE SOYBEAN CYST JRNL TITL 3 NEMATODE. JRNL REF J.BIOL.CHEM. V. 295 3708 2020 JRNL REFN ESSN 1083-351X JRNL PMID 32014996 JRNL DOI 10.1074/JBC.RA119.012256 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14-3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 38710 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 1899 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.4120 - 5.6609 1.00 2797 171 0.1853 0.1932 REMARK 3 2 5.6609 - 4.4943 1.00 2675 154 0.1743 0.1998 REMARK 3 3 4.4943 - 3.9265 1.00 2613 164 0.1693 0.1897 REMARK 3 4 3.9265 - 3.5677 1.00 2645 124 0.1807 0.2371 REMARK 3 5 3.5677 - 3.3120 1.00 2620 124 0.2139 0.2813 REMARK 3 6 3.3120 - 3.1168 1.00 2618 131 0.2345 0.2655 REMARK 3 7 3.1168 - 2.9607 1.00 2593 163 0.2398 0.2865 REMARK 3 8 2.9607 - 2.8319 1.00 2606 138 0.2514 0.3150 REMARK 3 9 2.8319 - 2.7228 1.00 2597 138 0.2618 0.3351 REMARK 3 10 2.7228 - 2.6289 1.00 2623 113 0.2623 0.2867 REMARK 3 11 2.6289 - 2.5467 1.00 2612 109 0.2696 0.3353 REMARK 3 12 2.5467 - 2.4739 1.00 2623 118 0.2846 0.2921 REMARK 3 13 2.4739 - 2.4088 1.00 2566 136 0.2953 0.3492 REMARK 3 14 2.4088 - 2.3500 1.00 2623 116 0.3188 0.3842 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 0 THROUGH 470) REMARK 3 ORIGIN FOR THE GROUP (A): -14.4698 -8.8309 30.1874 REMARK 3 T TENSOR REMARK 3 T11: 0.2684 T22: 0.3102 REMARK 3 T33: 0.2849 T12: -0.0318 REMARK 3 T13: 0.0250 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.6247 L22: 2.6362 REMARK 3 L33: 1.4923 L12: -0.2859 REMARK 3 L13: 0.2047 L23: 0.5692 REMARK 3 S TENSOR REMARK 3 S11: 0.0116 S12: -0.1369 S13: 0.0255 REMARK 3 S21: 0.0955 S22: -0.0021 S23: -0.1057 REMARK 3 S31: -0.0829 S32: -0.0693 S33: -0.0065 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 0 THROUGH 470) REMARK 3 ORIGIN FOR THE GROUP (A): -13.4475 -30.2395 8.8557 REMARK 3 T TENSOR REMARK 3 T11: 0.2711 T22: 0.2625 REMARK 3 T33: 0.3285 T12: 0.0403 REMARK 3 T13: -0.0207 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.6097 L22: 1.5236 REMARK 3 L33: 2.6242 L12: 0.2324 REMARK 3 L13: -0.1759 L23: 0.6540 REMARK 3 S TENSOR REMARK 3 S11: 0.0063 S12: 0.0299 S13: -0.1268 REMARK 3 S21: -0.0961 S22: -0.0087 S23: -0.0643 REMARK 3 S31: 0.1145 S32: -0.0952 S33: 0.0060 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : (CHAIN B AND (RESID 0 THROUGH 27 OR REMARK 3 (RESID 28 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 29 REMARK 3 THROUGH 402 OR (RESID 403 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 404 THROUGH 446 OR (RESID 447 REMARK 3 THROUGH 448 AND (NAME N OR NAME CA OR REMARK 3 NAME C OR NAME O OR NAME CB )) OR RESID REMARK 3 449 THROUGH 470)) REMARK 3 ATOM PAIRS NUMBER : 4225 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UXL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1000245303. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.6.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38807 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 47.412 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.15100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 2.23100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6UXH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.18 M TRIMETHYLAMINE N-OXIDE, 0.1 M REMARK 280 TRIS PH 8.5, 22.5% PEG MME 2000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.72250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.86650 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.72250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 63.86650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -1 REMARK 465 LYS A 264 REMARK 465 LYS A 265 REMARK 465 GLY A 266 REMARK 465 GLN A 267 REMARK 465 PRO A 268 REMARK 465 GLU A 269 REMARK 465 ASN A 270 REMARK 465 SER A 381 REMARK 465 ALA A 382 REMARK 465 LEU A 383 REMARK 465 ASP A 471 REMARK 465 SER B -1 REMARK 465 LYS B 264 REMARK 465 LYS B 265 REMARK 465 GLY B 266 REMARK 465 GLN B 267 REMARK 465 PRO B 268 REMARK 465 GLU B 269 REMARK 465 ASN B 270 REMARK 465 SER B 381 REMARK 465 ALA B 382 REMARK 465 LEU B 383 REMARK 465 ASP B 471 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 28 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 32 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 130 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 172 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 233 CG CD OE1 OE2 REMARK 470 LYS A 362 CG CD CE NZ REMARK 470 LYS A 403 CG CD CE NZ REMARK 470 LEU A 418 CG CD1 CD2 REMARK 470 GLU A 421 CG CD OE1 OE2 REMARK 470 LYS A 428 CG CD CE NZ REMARK 470 LEU A 429 CG CD1 CD2 REMARK 470 LEU A 430 CG CD1 CD2 REMARK 470 LYS A 431 CG CD CE NZ REMARK 470 ASP A 432 CG OD1 OD2 REMARK 470 ASN A 434 CG OD1 ND2 REMARK 470 LYS A 435 CG CD CE NZ REMARK 470 LEU A 437 CG CD1 CD2 REMARK 470 VAL A 438 CG1 CG2 REMARK 470 ASN A 439 CG OD1 ND2 REMARK 470 LYS A 441 CG CD CE NZ REMARK 470 LYS A 447 CG CD CE NZ REMARK 470 LYS A 452 CG CD CE NZ REMARK 470 LEU A 456 CG CD1 CD2 REMARK 470 GLU A 466 CG CD OE1 OE2 REMARK 470 LYS A 470 CG CD CE NZ REMARK 470 ARG B 32 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 130 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 172 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 233 CG CD OE1 OE2 REMARK 470 LYS B 362 CG CD CE NZ REMARK 470 LEU B 418 CG CD1 CD2 REMARK 470 GLU B 421 CG CD OE1 OE2 REMARK 470 LYS B 428 CG CD CE NZ REMARK 470 LEU B 429 CG CD1 CD2 REMARK 470 LEU B 430 CG CD1 CD2 REMARK 470 LYS B 431 CG CD CE NZ REMARK 470 ASP B 432 CG OD1 OD2 REMARK 470 ASN B 434 CG OD1 ND2 REMARK 470 LYS B 435 CG CD CE NZ REMARK 470 LEU B 437 CG CD1 CD2 REMARK 470 VAL B 438 CG1 CG2 REMARK 470 ASN B 439 CG OD1 ND2 REMARK 470 LYS B 441 CG CD CE NZ REMARK 470 LYS B 452 CG CD CE NZ REMARK 470 LEU B 456 CG CD1 CD2 REMARK 470 GLU B 466 CG CD OE1 OE2 REMARK 470 LYS B 470 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 328 OE1 GLU A 410 2.07 REMARK 500 OH TYR B 69 OXT PLG A 501 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 244 -115.37 -105.48 REMARK 500 ASN A 343 -136.06 -134.48 REMARK 500 ASN A 439 10.85 59.05 REMARK 500 LYS B 244 -115.61 -104.88 REMARK 500 ASN B 343 -136.25 -134.23 REMARK 500 ASN B 439 11.20 59.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLG B 501 DBREF 6UXL A 1 471 UNP K4FW35 K4FW35_SOYBN 1 471 DBREF 6UXL B 1 471 UNP K4FW35 K4FW35_SOYBN 1 471 SEQADV 6UXL SER A -1 UNP K4FW35 EXPRESSION TAG SEQADV 6UXL HIS A 0 UNP K4FW35 EXPRESSION TAG SEQADV 6UXL SER B -1 UNP K4FW35 EXPRESSION TAG SEQADV 6UXL HIS B 0 UNP K4FW35 EXPRESSION TAG SEQRES 1 A 473 SER HIS MET ASP PRO VAL SER VAL TRP GLY ASN THR PRO SEQRES 2 A 473 LEU ALA THR VAL ASP PRO GLU ILE HIS ASP LEU ILE GLU SEQRES 3 A 473 LYS GLU LYS ARG ARG GLN CYS ARG GLY ILE GLU LEU ILE SEQRES 4 A 473 ALA SER GLU ASN PHE THR SER PHE ALA VAL ILE GLU ALA SEQRES 5 A 473 LEU GLY SER ALA LEU THR ASN LYS TYR SER GLU GLY MET SEQRES 6 A 473 PRO GLY ASN ARG TYR TYR GLY GLY ASN GLU TYR ILE ASP SEQRES 7 A 473 GLN ILE GLU ASN LEU CYS ARG SER ARG ALA LEU GLN ALA SEQRES 8 A 473 PHE HIS LEU ASP ALA GLN SER TRP GLY VAL ASN VAL GLN SEQRES 9 A 473 PRO TYR SER GLY SER PRO ALA ASN PHE ALA ALA TYR THR SEQRES 10 A 473 ALA VAL LEU ASN PRO HIS ASP ARG ILE MET GLY LEU ASP SEQRES 11 A 473 LEU ARG SER GLY GLY HIS LEU THR HIS GLY TYR TYR THR SEQRES 12 A 473 SER GLY GLY LYS LYS ILE SER ALA THR SER ILE TYR PHE SEQRES 13 A 473 GLU SER LEU PRO TYR LYS VAL ASN SER THR THR GLY TYR SEQRES 14 A 473 ILE ASP TYR ASP ARG LEU GLU GLU LYS ALA LEU ASP PHE SEQRES 15 A 473 ARG PRO LYS LEU ILE ILE CYS GLY GLY SER ALA TYR PRO SEQRES 16 A 473 ARG ASP TRP ASP TYR LYS ARG PHE ARG GLU VAL ALA ASP SEQRES 17 A 473 LYS CYS GLY ALA LEU LEU LEU CYS ASP MET ALA HIS THR SEQRES 18 A 473 SER GLY LEU VAL ALA ALA GLN GLU VAL ASN SER PRO PHE SEQRES 19 A 473 GLU TYR CYS ASP ILE VAL THR THR THR THR HIS LYS SER SEQRES 20 A 473 LEU ARG GLY PRO ARG ALA GLY MET ILE PHE TYR ARG LYS SEQRES 21 A 473 GLY PRO LYS PRO PRO LYS LYS GLY GLN PRO GLU ASN ALA SEQRES 22 A 473 VAL TYR ASP PHE GLU ASP LYS ILE ASN PHE ALA VAL PHE SEQRES 23 A 473 PRO SER LEU GLN GLY GLY PRO HIS ASN HIS GLN ILE GLY SEQRES 24 A 473 ALA LEU ALA VAL ALA LEU LYS GLN ALA ALA SER PRO GLY SEQRES 25 A 473 PHE LYS ALA TYR ALA LYS GLN VAL LYS ALA ASN ALA VAL SEQRES 26 A 473 ALA LEU GLY LYS TYR LEU MET GLY LYS GLY TYR SER LEU SEQRES 27 A 473 VAL THR GLY GLY THR GLU ASN HIS LEU VAL LEU TRP ASP SEQRES 28 A 473 LEU ARG PRO LEU GLY LEU THR GLY TYR LYS VAL GLU LYS SEQRES 29 A 473 LEU CYS ASP LEU CYS ASN ILE THR VAL ASN LYS ASN ALA SEQRES 30 A 473 VAL PHE GLY ASP SER SER ALA LEU ALA PRO GLY GLY VAL SEQRES 31 A 473 ARG ILE GLY ALA PRO ALA MET THR SER ARG GLY LEU VAL SEQRES 32 A 473 GLU LYS ASP PHE GLU GLN ILE GLY GLU PHE LEU HIS ARG SEQRES 33 A 473 ALA VAL THR LEU THR LEU GLU ILE GLN LYS GLU HIS GLY SEQRES 34 A 473 LYS LEU LEU LYS ASP PHE ASN LYS GLY LEU VAL ASN ASN SEQRES 35 A 473 LYS ALA ILE GLU ASP LEU LYS ALA ASP VAL GLU LYS PHE SEQRES 36 A 473 SER ALA LEU PHE ASP MET PRO GLY PHE LEU VAL SER GLU SEQRES 37 A 473 MET LYS TYR LYS ASP SEQRES 1 B 473 SER HIS MET ASP PRO VAL SER VAL TRP GLY ASN THR PRO SEQRES 2 B 473 LEU ALA THR VAL ASP PRO GLU ILE HIS ASP LEU ILE GLU SEQRES 3 B 473 LYS GLU LYS ARG ARG GLN CYS ARG GLY ILE GLU LEU ILE SEQRES 4 B 473 ALA SER GLU ASN PHE THR SER PHE ALA VAL ILE GLU ALA SEQRES 5 B 473 LEU GLY SER ALA LEU THR ASN LYS TYR SER GLU GLY MET SEQRES 6 B 473 PRO GLY ASN ARG TYR TYR GLY GLY ASN GLU TYR ILE ASP SEQRES 7 B 473 GLN ILE GLU ASN LEU CYS ARG SER ARG ALA LEU GLN ALA SEQRES 8 B 473 PHE HIS LEU ASP ALA GLN SER TRP GLY VAL ASN VAL GLN SEQRES 9 B 473 PRO TYR SER GLY SER PRO ALA ASN PHE ALA ALA TYR THR SEQRES 10 B 473 ALA VAL LEU ASN PRO HIS ASP ARG ILE MET GLY LEU ASP SEQRES 11 B 473 LEU ARG SER GLY GLY HIS LEU THR HIS GLY TYR TYR THR SEQRES 12 B 473 SER GLY GLY LYS LYS ILE SER ALA THR SER ILE TYR PHE SEQRES 13 B 473 GLU SER LEU PRO TYR LYS VAL ASN SER THR THR GLY TYR SEQRES 14 B 473 ILE ASP TYR ASP ARG LEU GLU GLU LYS ALA LEU ASP PHE SEQRES 15 B 473 ARG PRO LYS LEU ILE ILE CYS GLY GLY SER ALA TYR PRO SEQRES 16 B 473 ARG ASP TRP ASP TYR LYS ARG PHE ARG GLU VAL ALA ASP SEQRES 17 B 473 LYS CYS GLY ALA LEU LEU LEU CYS ASP MET ALA HIS THR SEQRES 18 B 473 SER GLY LEU VAL ALA ALA GLN GLU VAL ASN SER PRO PHE SEQRES 19 B 473 GLU TYR CYS ASP ILE VAL THR THR THR THR HIS LYS SER SEQRES 20 B 473 LEU ARG GLY PRO ARG ALA GLY MET ILE PHE TYR ARG LYS SEQRES 21 B 473 GLY PRO LYS PRO PRO LYS LYS GLY GLN PRO GLU ASN ALA SEQRES 22 B 473 VAL TYR ASP PHE GLU ASP LYS ILE ASN PHE ALA VAL PHE SEQRES 23 B 473 PRO SER LEU GLN GLY GLY PRO HIS ASN HIS GLN ILE GLY SEQRES 24 B 473 ALA LEU ALA VAL ALA LEU LYS GLN ALA ALA SER PRO GLY SEQRES 25 B 473 PHE LYS ALA TYR ALA LYS GLN VAL LYS ALA ASN ALA VAL SEQRES 26 B 473 ALA LEU GLY LYS TYR LEU MET GLY LYS GLY TYR SER LEU SEQRES 27 B 473 VAL THR GLY GLY THR GLU ASN HIS LEU VAL LEU TRP ASP SEQRES 28 B 473 LEU ARG PRO LEU GLY LEU THR GLY TYR LYS VAL GLU LYS SEQRES 29 B 473 LEU CYS ASP LEU CYS ASN ILE THR VAL ASN LYS ASN ALA SEQRES 30 B 473 VAL PHE GLY ASP SER SER ALA LEU ALA PRO GLY GLY VAL SEQRES 31 B 473 ARG ILE GLY ALA PRO ALA MET THR SER ARG GLY LEU VAL SEQRES 32 B 473 GLU LYS ASP PHE GLU GLN ILE GLY GLU PHE LEU HIS ARG SEQRES 33 B 473 ALA VAL THR LEU THR LEU GLU ILE GLN LYS GLU HIS GLY SEQRES 34 B 473 LYS LEU LEU LYS ASP PHE ASN LYS GLY LEU VAL ASN ASN SEQRES 35 B 473 LYS ALA ILE GLU ASP LEU LYS ALA ASP VAL GLU LYS PHE SEQRES 36 B 473 SER ALA LEU PHE ASP MET PRO GLY PHE LEU VAL SER GLU SEQRES 37 B 473 MET LYS TYR LYS ASP HET PLG A 501 20 HET PLG B 501 20 HETNAM PLG N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL- HETNAM 2 PLG PYRIDIN-4-YL-METHANE] HETSYN PLG N-PYRIDOXYL-GLYCINE-5-MONOPHOSPHATE FORMUL 3 PLG 2(C10 H15 N2 O7 P) FORMUL 5 HOH *85(H2 O) HELIX 1 AA1 PRO A 3 GLY A 8 1 6 HELIX 2 AA2 PRO A 11 ASP A 16 1 6 HELIX 3 AA3 ASP A 16 ARG A 32 1 17 HELIX 4 AA4 SER A 44 GLY A 52 1 9 HELIX 5 AA5 SER A 53 LYS A 58 5 6 HELIX 6 AA6 ASN A 72 PHE A 90 1 19 HELIX 7 AA7 SER A 105 LEU A 118 1 14 HELIX 8 AA8 HIS A 134 GLY A 138 5 5 HELIX 9 AA9 SER A 148 PHE A 154 1 7 HELIX 10 AB1 ASP A 169 ARG A 181 1 13 HELIX 11 AB2 ASP A 197 GLY A 209 1 13 HELIX 12 AB3 THR A 219 ALA A 225 1 7 HELIX 13 AB4 SER A 230 TYR A 234 5 5 HELIX 14 AB5 PHE A 275 PHE A 284 1 10 HELIX 15 AB6 HIS A 292 ALA A 307 1 16 HELIX 16 AB7 SER A 308 LYS A 332 1 25 HELIX 17 AB8 THR A 338 GLY A 340 5 3 HELIX 18 AB9 ARG A 351 GLY A 354 5 4 HELIX 19 AC1 THR A 356 CYS A 367 1 12 HELIX 20 AC2 ALA A 392 SER A 397 1 6 HELIX 21 AC3 VAL A 401 GLY A 427 1 27 HELIX 22 AC4 LEU A 429 GLY A 436 1 8 HELIX 23 AC5 ASN A 440 ALA A 455 1 16 HELIX 24 AC6 LEU A 463 MET A 467 5 5 HELIX 25 AC7 PRO B 3 GLY B 8 1 6 HELIX 26 AC8 PRO B 11 ASP B 16 1 6 HELIX 27 AC9 ASP B 16 ARG B 32 1 17 HELIX 28 AD1 SER B 44 GLY B 52 1 9 HELIX 29 AD2 SER B 53 LYS B 58 5 6 HELIX 30 AD3 ASN B 72 PHE B 90 1 19 HELIX 31 AD4 SER B 105 LEU B 118 1 14 HELIX 32 AD5 HIS B 134 GLY B 138 5 5 HELIX 33 AD6 SER B 148 PHE B 154 1 7 HELIX 34 AD7 ASP B 169 ARG B 181 1 13 HELIX 35 AD8 ASP B 197 GLY B 209 1 13 HELIX 36 AD9 THR B 219 ALA B 225 1 7 HELIX 37 AE1 SER B 230 TYR B 234 5 5 HELIX 38 AE2 PHE B 275 PHE B 284 1 10 HELIX 39 AE3 HIS B 292 ALA B 307 1 16 HELIX 40 AE4 SER B 308 LYS B 332 1 25 HELIX 41 AE5 THR B 338 GLY B 340 5 3 HELIX 42 AE6 ARG B 351 GLY B 354 5 4 HELIX 43 AE7 THR B 356 CYS B 367 1 12 HELIX 44 AE8 ALA B 392 SER B 397 1 6 HELIX 45 AE9 VAL B 401 GLY B 427 1 27 HELIX 46 AF1 LEU B 429 LYS B 435 1 7 HELIX 47 AF2 ASN B 440 ALA B 455 1 16 HELIX 48 AF3 LEU B 463 MET B 467 5 5 SHEET 1 AA1 2 ILE A 34 GLU A 35 0 SHEET 2 AA1 2 ILE A 369 THR A 370 1 O THR A 370 N ILE A 34 SHEET 1 AA2 2 GLY A 62 MET A 63 0 SHEET 2 AA2 2 ASN A 66 ARG A 67 -1 O ASN A 66 N MET A 63 SHEET 1 AA3 7 TRP A 97 ASN A 100 0 SHEET 2 AA3 7 GLY A 252 ARG A 257 -1 O TYR A 256 N GLY A 98 SHEET 3 AA3 7 ILE A 237 THR A 241 -1 N VAL A 238 O PHE A 255 SHEET 4 AA3 7 LEU A 211 ASP A 215 1 N CYS A 214 O THR A 239 SHEET 5 AA3 7 LEU A 184 CYS A 187 1 N CYS A 187 O ASP A 215 SHEET 6 AA3 7 ARG A 123 LEU A 127 1 N MET A 125 O ILE A 186 SHEET 7 AA3 7 GLU A 155 TYR A 159 1 O GLU A 155 N ILE A 124 SHEET 1 AA4 4 SER A 335 LEU A 336 0 SHEET 2 AA4 4 LEU A 345 ASP A 349 -1 O ASP A 349 N SER A 335 SHEET 3 AA4 4 GLY A 387 GLY A 391 -1 O VAL A 388 N TRP A 348 SHEET 4 AA4 4 ASN A 372 ASN A 374 -1 N ASN A 374 O GLY A 387 SHEET 1 AA5 2 ILE B 34 GLU B 35 0 SHEET 2 AA5 2 ILE B 369 THR B 370 1 O THR B 370 N ILE B 34 SHEET 1 AA6 2 GLY B 62 MET B 63 0 SHEET 2 AA6 2 ASN B 66 ARG B 67 -1 O ASN B 66 N MET B 63 SHEET 1 AA7 7 TRP B 97 ASN B 100 0 SHEET 2 AA7 7 GLY B 252 ARG B 257 -1 O TYR B 256 N GLY B 98 SHEET 3 AA7 7 ILE B 237 THR B 241 -1 N VAL B 238 O PHE B 255 SHEET 4 AA7 7 LEU B 211 ASP B 215 1 N CYS B 214 O THR B 239 SHEET 5 AA7 7 LEU B 184 CYS B 187 1 N CYS B 187 O ASP B 215 SHEET 6 AA7 7 ARG B 123 LEU B 127 1 N MET B 125 O ILE B 186 SHEET 7 AA7 7 GLU B 155 TYR B 159 1 O GLU B 155 N ILE B 124 SHEET 1 AA8 4 SER B 335 LEU B 336 0 SHEET 2 AA8 4 LEU B 345 ASP B 349 -1 O ASP B 349 N SER B 335 SHEET 3 AA8 4 GLY B 387 GLY B 391 -1 O VAL B 388 N TRP B 348 SHEET 4 AA8 4 ASN B 372 ASN B 374 -1 N ASN B 374 O GLY B 387 CISPEP 1 PHE A 284 PRO A 285 0 7.78 CISPEP 2 PHE B 284 PRO B 285 0 8.07 SITE 1 AC1 18 SER A 39 SER A 105 GLY A 106 SER A 107 SITE 2 AC1 18 HIS A 134 GLY A 189 SER A 190 ASP A 215 SITE 3 AC1 18 ALA A 217 HIS A 218 THR A 241 HIS A 243 SITE 4 AC1 18 LYS A 244 ARG A 389 TYR B 59 TYR B 69 SITE 5 AC1 18 GLY B 289 GLY B 290 SITE 1 AC2 20 TYR A 59 GLU A 61 TYR A 69 TYR A 104 SITE 2 AC2 20 GLY A 289 GLY A 290 SER B 39 SER B 105 SITE 3 AC2 20 GLY B 106 SER B 107 HIS B 134 GLY B 189 SITE 4 AC2 20 SER B 190 ASP B 215 ALA B 217 HIS B 218 SITE 5 AC2 20 THR B 241 HIS B 243 LYS B 244 ARG B 389 CRYST1 55.727 127.445 127.733 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017945 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007847 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007829 0.00000