HEADER VIRAL PROEIN/IMMUNE SYSTEM 13-NOV-19 6UYF TITLE STRUCTURE OF HEPATITIS C VIRUS ENVELOPE GLYCOPROTEIN E2MC3-V1 TITLE 2 REDESIGNED CORE FROM GENOTYPE 6A BOUND TO BROADLY NEUTRALIZING TITLE 3 ANTIBODY AR3B COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB AR3B HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB AR3B LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: ENVELOPE GLYCOPROTEIN E2; COMPND 11 CHAIN: E; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: RECOMBINANT HEPATITIS C VIRUS HK6A/JFH-1; SOURCE 17 ORGANISM_TAXID: 595609; SOURCE 18 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 19 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS HCV, E2 CORE, VACCINE DESIGN, SELF-ASSEMBLY NANOPARTICLE, BROADLY KEYWDS 2 NEUTRALIZING ANTIBODIES, BNABS, VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX, KEYWDS 3 VIRAL PROEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.TZARUM,I.A.WILSON,J.ZHU REVDAT 4 11-OCT-23 6UYF 1 HETSYN LINK REVDAT 3 29-JUL-20 6UYF 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 17-JUN-20 6UYF 1 JRNL REVDAT 1 22-APR-20 6UYF 0 JRNL AUTH L.HE,N.TZARUM,X.LIN,B.SHAPERO,C.SOU,C.J.MANN,A.STANO, JRNL AUTH 2 L.ZHANG,K.NAGY,E.GIANG,M.LAW,I.A.WILSON,J.ZHU JRNL TITL PROOF OF CONCEPT FOR RATIONAL DESIGN OF HEPATITIS C VIRUS E2 JRNL TITL 2 CORE NANOPARTICLE VACCINES. JRNL REF SCI ADV V. 6 Z6225 2020 JRNL REFN ESSN 2375-2548 JRNL PMID 32494617 JRNL DOI 10.1126/SCIADV.AAZ6225 REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 3 NUMBER OF REFLECTIONS : 38835 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160 REMARK 3 FREE R VALUE TEST SET COUNT : 2003 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.6500 - 4.9700 1.00 2918 141 0.1862 0.2177 REMARK 3 2 4.9700 - 3.9400 1.00 2861 147 0.1486 0.1643 REMARK 3 3 3.9400 - 3.4500 1.00 2807 151 0.1761 0.2142 REMARK 3 4 3.4500 - 3.1300 1.00 2802 160 0.1912 0.2355 REMARK 3 5 3.1300 - 2.9100 1.00 2816 154 0.2141 0.2652 REMARK 3 6 2.9100 - 2.7400 1.00 2809 123 0.2066 0.2729 REMARK 3 7 2.7400 - 2.6000 1.00 2776 165 0.2073 0.2458 REMARK 3 8 2.6000 - 2.4900 1.00 2745 174 0.2026 0.2658 REMARK 3 9 2.4900 - 2.3900 0.98 2767 154 0.2136 0.2763 REMARK 3 10 2.3900 - 2.3100 0.95 2603 155 0.2124 0.2784 REMARK 3 11 2.3100 - 2.2400 0.90 2486 144 0.2154 0.2809 REMARK 3 12 2.2400 - 2.1700 0.84 2357 127 0.2116 0.2543 REMARK 3 13 2.1700 - 2.1100 0.78 2186 111 0.2071 0.2706 REMARK 3 14 2.1100 - 2.0600 0.69 1899 97 0.1974 0.2402 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4708 REMARK 3 ANGLE : 0.990 6411 REMARK 3 CHIRALITY : 0.050 742 REMARK 3 PLANARITY : 0.008 807 REMARK 3 DIHEDRAL : 19.715 1693 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UYF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1000245435. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38846 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.060 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6BKC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG 8000, 0.1M HEPES PH=7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 87.60700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.02000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 87.60700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.02000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, E, A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY H 26 REMARK 465 SER H 128 REMARK 465 LYS H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 GLY H 133 REMARK 465 GLY H 134 REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 GLY H 217 REMARK 465 SER H 218 REMARK 465 CYS L 214 REMARK 465 GLN E 412 REMARK 465 LEU E 413 REMARK 465 ILE E 414 REMARK 465 ASN E 415 REMARK 465 THR E 416 REMARK 465 ASN E 417 REMARK 465 GLY E 418 REMARK 465 ALA E 444 REMARK 465 LYS E 445 REMARK 465 ASN E 446 REMARK 465 VAL E 447 REMARK 465 ASP E 448 REMARK 465 SER E 449 REMARK 465 LEU E 546 REMARK 465 GLY E 547 REMARK 465 GLY E 548 REMARK 465 TRP E 549 REMARK 465 PRO E 591 REMARK 465 GLY E 592 REMARK 465 GLY E 593 REMARK 465 PRO E 594 REMARK 465 THR E 595 REMARK 465 ASP E 596 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS L 188 O HOH L 301 1.70 REMARK 500 SG CYS E 607 SG CYS E 644 1.74 REMARK 500 NZ LYS L 149 O HOH L 302 2.07 REMARK 500 NE2 GLN H 192 O HOH H 301 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN H 100I -174.28 -172.91 REMARK 500 ASP H 101 132.69 178.94 REMARK 500 ALA L 51 -37.33 71.48 REMARK 500 SER L 67 147.60 -171.45 REMARK 500 ALA L 84 -170.26 -173.26 REMARK 500 ASN L 138 68.06 61.28 REMARK 500 HIS E 488 151.12 -45.69 REMARK 500 TYR E 489 80.03 44.02 REMARK 500 ASP E 495 -148.74 -134.67 REMARK 500 REMARK 500 REMARK: NULL DBREF 6UYF H 3 218 PDB 6UYF 6UYF 3 218 DBREF 6UYF L 1 214 PDB 6UYF 6UYF 1 214 DBREF 6UYF E 412 645 PDB 6UYF 6UYF 412 645 SEQRES 1 H 230 LEU LEU GLU GLN SER GLY PRO GLU VAL LYS LYS PRO GLY SEQRES 2 H 230 SER SER VAL LYS VAL SER CYS LYS ASP SER GLY ASP THR SEQRES 3 H 230 PHE ASN GLU PRO VAL THR TRP VAL ARG GLN ALA PRO GLY SEQRES 4 H 230 GLN GLY LEU GLU TRP ILE GLY GLY ILE ILE PRO ALA PHE SEQRES 5 H 230 GLY VAL THR LYS TYR ALA GLN LYS PHE GLN GLY ARG VAL SEQRES 6 H 230 ILE ILE SER ALA ASP ALA SER THR ALA THR ALA TYR LEU SEQRES 7 H 230 GLU LEU SER SER LEU ARG SER GLU ASP THR ALA VAL TYR SEQRES 8 H 230 TYR CYS ALA LYS VAL GLY LEU ARG GLY ILE VAL MET VAL SEQRES 9 H 230 GLY GLY LEU ALA MET ASN TRP LEU ASP PRO TRP GLY GLN SEQRES 10 H 230 GLY THR GLN VAL THR VAL SER SER ALA SER THR LYS GLY SEQRES 11 H 230 PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SEQRES 12 H 230 SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP SEQRES 13 H 230 TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY SEQRES 14 H 230 ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU SEQRES 15 H 230 GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR SEQRES 16 H 230 VAL PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS SEQRES 17 H 230 ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS SEQRES 18 H 230 LYS VAL GLU PRO LYS SER CYS GLY SER SEQRES 1 L 215 GLU ILE GLU LEU THR GLN SER PRO GLY THR LEU SER LEU SEQRES 2 L 215 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 L 215 GLN SER VAL SER SER SER TYR LEU ALA TRP TYR GLN GLN SEQRES 4 L 215 LYS PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR GLY ALA SEQRES 5 L 215 SER SER ARG ALA THR GLY ILE PRO ASP ARG PHE SER GLY SEQRES 6 L 215 SER GLY SER GLY THR ASP PHE THR LEU THR ILE SER ARG SEQRES 7 L 215 LEU GLU PRO GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN SEQRES 8 L 215 TYR GLY SER SER PRO GLN THR PHE GLY GLN GLY THR LYS SEQRES 9 L 215 VAL GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 L 215 ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR SEQRES 11 L 215 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 L 215 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 L 215 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 L 215 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 L 215 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 L 215 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 L 215 SER PHE ASN ARG GLY GLU CYS SEQRES 1 E 177 GLN LEU ILE ASN THR ASN GLY SER TRP HIS ILE ASN ARG SEQRES 2 E 177 THR ALA LEU ASN CYS ASN ASP SER LEU GLN THR GLY PHE SEQRES 3 E 177 ILE THR SER LEU PHE TYR ALA LYS ASN VAL ASP SER SER SEQRES 4 E 177 GLY CYS GLN ASN TRP ASP GLU PRO HIS TYR PRO ARG PRO SEQRES 5 E 177 CYS ASP VAL VAL SER ALA ARG THR VAL CYS GLY PRO VAL SEQRES 6 E 177 TYR CYS PHE THR PRO SER PRO VAL VAL VAL GLY THR THR SEQRES 7 E 177 ASP LYS LEU GLY ILE PRO THR TYR ASN TRP GLY GLU ASN SEQRES 8 E 177 GLU THR ASP VAL PHE MET LEU GLU SER LEU GLY GLY TRP SEQRES 9 E 177 PHE GLY CYS THR TRP MET ASN SER THR GLY PHE THR LYS SEQRES 10 E 177 THR CYS GLY ALA PRO PRO GLY GLY PRO THR ASP GLY GLY SEQRES 11 E 177 SER GLY PRO TRP ILE THR PRO ARG CYS LEU VAL ASP TYR SEQRES 12 E 177 PRO TYR ARG LEU TRP HIS TYR PRO CYS THR VAL ASN PHE SEQRES 13 E 177 THR LEU HIS LYS VAL ARG MET PHE VAL GLY GLY ILE GLU SEQRES 14 E 177 HIS ARG PHE ASP ALA ALA CYS ASN HET NAG A 1 14 HET NAG A 2 14 HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET MAN C 4 11 HET NAG E 701 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 4 NAG 7(C8 H15 N O6) FORMUL 6 BMA C6 H12 O6 FORMUL 6 MAN C6 H12 O6 FORMUL 8 HOH *306(H2 O) HELIX 1 AA1 ARG H 83 THR H 87 5 5 HELIX 2 AA2 SER H 156 ALA H 158 5 3 HELIX 3 AA3 PRO H 185 LEU H 189 5 5 HELIX 4 AA4 LYS H 201 ASN H 204 5 4 HELIX 5 AA5 SER L 30 SER L 31 5 3 HELIX 6 AA6 GLU L 79 PHE L 83 5 5 HELIX 7 AA7 SER L 121 LYS L 126 1 6 HELIX 8 AA8 LYS L 183 GLU L 187 1 5 HELIX 9 AA9 HIS E 421 THR E 425 5 5 HELIX 10 AB1 ILE E 438 TYR E 443 1 6 HELIX 11 AB2 ARG E 500 VAL E 502 5 3 HELIX 12 AB3 TYR E 613 TYR E 618 1 6 HELIX 13 AB4 PRO E 619 VAL E 622 5 4 SHEET 1 AA1 4 LEU H 4 GLN H 6 0 SHEET 2 AA1 4 VAL H 18 ASP H 24 -1 O LYS H 23 N GLU H 5 SHEET 3 AA1 4 THR H 77 LEU H 82 -1 O LEU H 80 N VAL H 20 SHEET 4 AA1 4 VAL H 67 ASP H 72 -1 N ASP H 72 O THR H 77 SHEET 1 AA2 6 GLU H 10 LYS H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O GLN H 108 N GLU H 10 SHEET 3 AA2 6 ALA H 88 VAL H 95 -1 N TYR H 90 O THR H 107 SHEET 4 AA2 6 VAL H 34 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AA2 6 LEU H 45 ILE H 51 -1 O GLY H 49 N TRP H 36 SHEET 6 AA2 6 THR H 57 TYR H 59 -1 O LYS H 58 N GLY H 50 SHEET 1 AA3 4 GLU H 10 LYS H 12 0 SHEET 2 AA3 4 THR H 107 VAL H 111 1 O GLN H 108 N GLU H 10 SHEET 3 AA3 4 ALA H 88 VAL H 95 -1 N TYR H 90 O THR H 107 SHEET 4 AA3 4 LEU H 100K TRP H 103 -1 O ASP H 101 N LYS H 94 SHEET 1 AA4 3 LEU H 100F MET H 100H 0 SHEET 2 AA4 3 VAL H 100A VAL H 100C-1 N VAL H 100A O MET H 100H SHEET 3 AA4 3 CYS E 429 ASN E 430 -1 O CYS E 429 N MET H 100B SHEET 1 AA5 4 SER H 120 LEU H 124 0 SHEET 2 AA5 4 ALA H 136 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA5 4 TYR H 176 VAL H 184 -1 O LEU H 178 N VAL H 142 SHEET 4 AA5 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA6 4 SER H 120 LEU H 124 0 SHEET 2 AA6 4 ALA H 136 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA6 4 TYR H 176 VAL H 184 -1 O LEU H 178 N VAL H 142 SHEET 4 AA6 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA7 3 THR H 151 TRP H 154 0 SHEET 2 AA7 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA7 3 THR H 205 LYS H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 AA8 3 LEU L 4 SER L 7 0 SHEET 2 AA8 3 ALA L 19 VAL L 29 -1 O ARG L 24 N THR L 5 SHEET 3 AA8 3 PHE L 62 ILE L 75 -1 O LEU L 73 N LEU L 21 SHEET 1 AA9 6 THR L 10 LEU L 13 0 SHEET 2 AA9 6 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AA9 6 VAL L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA9 6 LEU L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 AA9 6 ARG L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA9 6 SER L 53 ARG L 54 -1 O SER L 53 N TYR L 49 SHEET 1 AB1 4 THR L 10 LEU L 13 0 SHEET 2 AB1 4 THR L 102 ILE L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AB1 4 VAL L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AB1 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AB2 4 SER L 114 PHE L 118 0 SHEET 2 AB2 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 AB2 4 TYR L 173 SER L 182 -1 O LEU L 175 N LEU L 136 SHEET 4 AB2 4 SER L 159 VAL L 163 -1 N SER L 162 O SER L 176 SHEET 1 AB3 4 ALA L 153 LEU L 154 0 SHEET 2 AB3 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AB3 4 VAL L 191 THR L 197 -1 O THR L 197 N LYS L 145 SHEET 4 AB3 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SHEET 1 AB4 2 VAL E 496 SER E 498 0 SHEET 2 AB4 2 VAL E 536 MET E 538 -1 O PHE E 537 N VAL E 497 SHEET 1 AB5 4 PRO E 513 VAL E 516 0 SHEET 2 AB5 4 VAL E 506 PHE E 509 -1 N CYS E 508 O VAL E 514 SHEET 3 AB5 4 GLY E 551 MET E 555 -1 O GLY E 551 N PHE E 509 SHEET 4 AB5 4 THR E 561 CYS E 564 -1 O LYS E 562 N TRP E 554 SHEET 1 AB6 4 TRP E 602 THR E 604 0 SHEET 2 AB6 4 CYS E 607 VAL E 609 -1 O CYS E 607 N ILE E 603 SHEET 3 AB6 4 ILE E 636 CYS E 644 -1 O ALA E 643 N LEU E 608 SHEET 4 AB6 4 THR E 625 VAL E 633 -1 N MET E 631 O HIS E 638 SSBOND 1 CYS H 22 CYS H 92 1555 1555 1.81 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.00 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.01 SSBOND 4 CYS L 134 CYS L 194 1555 1555 1.94 SSBOND 5 CYS E 429 CYS E 503 1555 1555 1.93 SSBOND 6 CYS E 452 CYS E 620 1555 1555 1.96 SSBOND 7 CYS E 494 CYS E 564 1555 1555 2.15 SSBOND 8 CYS E 508 CYS E 552 1555 1555 1.87 LINK ND2 ASN E 423 C1 NAG E 701 1555 1555 1.44 LINK ND2 ASN E 430 C1 NAG A 1 1555 1555 1.44 LINK ND2 ASN E 532 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN E 556 C1 NAG B 1 1555 1555 1.45 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.45 LINK O3 BMA C 3 C1 MAN C 4 1555 1555 1.45 CISPEP 1 ASP H 101 PRO H 102 0 -0.88 CISPEP 2 PHE H 146 PRO H 147 0 -6.64 CISPEP 3 GLU H 148 PRO H 149 0 -0.72 CISPEP 4 SER L 7 PRO L 8 0 -3.09 CISPEP 5 SER L 94 PRO L 95 0 0.53 CISPEP 6 TYR L 140 PRO L 141 0 -1.82 CISPEP 7 THR E 510 PRO E 511 0 15.31 CRYST1 175.214 54.040 71.486 90.00 94.74 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005707 0.000000 0.000473 0.00000 SCALE2 0.000000 0.018505 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014037 0.00000