data_6UYR # _entry.id 6UYR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.323 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6UYR WWPDB D_1000244126 # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 4WJQ unspecified PDB . 4WJP unspecified PDB . 4WJO unspecified PDB . 4WJN unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6UYR _pdbx_database_status.recvd_initial_deposition_date 2019-11-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wahba, H.M.' 1 0000-0003-4426-1395 'Gagnon, C.' 2 0000-0002-9433-2270 'Mascle, X.H.' 3 0000-0002-8962-5124 'Lussier-Price, M.' 4 0000-0003-3854-9720 'Cappadocia, L.' 5 0000-0001-7348-1982 'Sakaguchi, K.' 6 0000-0002-8434-4171 'Omichinski, J.G.' 7 0000-0002-3543-1914 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Structure _citation.journal_id_ASTM STRUE6 _citation.journal_id_CSD 2005 _citation.journal_id_ISSN 0969-2126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 28 _citation.language ? _citation.page_first 157 _citation.page_last 168.e5 _citation.title 'Acetylation of SUMO1 Alters Interactions with the SIMs of PML and Daxx in a Protein-Specific Manner.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.str.2019.11.019 _citation.pdbx_database_id_PubMed 31879127 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Mascle, X.H.' 1 ? primary 'Gagnon, C.' 2 ? primary 'Wahba, H.M.' 3 ? primary 'Lussier-Price, M.' 4 ? primary 'Cappadocia, L.' 5 ? primary 'Sakaguchi, K.' 6 ? primary 'Omichinski, J.G.' 7 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6UYR _cell.details ? _cell.formula_units_Z ? _cell.length_a 38.373 _cell.length_a_esd ? _cell.length_b 47.070 _cell.length_b_esd ? _cell.length_c 63.179 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UYR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Small ubiquitin-related modifier 1' 9567.801 1 ? C52A ? ? 2 polymer man 'Protein PML' 2976.985 1 ? E574Y ? ? 3 water nat water 18.015 126 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 ;SUMO-1,GAP-modifying protein 1,GMP1,SMT3 homolog 3,Sentrin,Ubiquitin-homology domain protein PIC1,Ubiquitin-like protein SMT3C,Smt3C,Ubiquitin-like protein UBL1 ; 2 'Promyelocytic leukemia protein,RING finger protein 71,Tripartite motif-containing protein 19' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes ;GSKEGEYIKLKVIGQDSSEIHFKVKMTTHLK(ALY)LKESYAQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEV YQEQTGG ; ;GSKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYAQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ TGG ; A ? 2 'polypeptide(L)' no no GSGAGEAEERVVVISSSEDSDAENSSSRY GSGAGEAEERVVVISSSEDSDAENSSSRY B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 LYS n 1 4 GLU n 1 5 GLY n 1 6 GLU n 1 7 TYR n 1 8 ILE n 1 9 LYS n 1 10 LEU n 1 11 LYS n 1 12 VAL n 1 13 ILE n 1 14 GLY n 1 15 GLN n 1 16 ASP n 1 17 SER n 1 18 SER n 1 19 GLU n 1 20 ILE n 1 21 HIS n 1 22 PHE n 1 23 LYS n 1 24 VAL n 1 25 LYS n 1 26 MET n 1 27 THR n 1 28 THR n 1 29 HIS n 1 30 LEU n 1 31 LYS n 1 32 ALY n 1 33 LEU n 1 34 LYS n 1 35 GLU n 1 36 SER n 1 37 TYR n 1 38 ALA n 1 39 GLN n 1 40 ARG n 1 41 GLN n 1 42 GLY n 1 43 VAL n 1 44 PRO n 1 45 MET n 1 46 ASN n 1 47 SER n 1 48 LEU n 1 49 ARG n 1 50 PHE n 1 51 LEU n 1 52 PHE n 1 53 GLU n 1 54 GLY n 1 55 GLN n 1 56 ARG n 1 57 ILE n 1 58 ALA n 1 59 ASP n 1 60 ASN n 1 61 HIS n 1 62 THR n 1 63 PRO n 1 64 LYS n 1 65 GLU n 1 66 LEU n 1 67 GLY n 1 68 MET n 1 69 GLU n 1 70 GLU n 1 71 GLU n 1 72 ASP n 1 73 VAL n 1 74 ILE n 1 75 GLU n 1 76 VAL n 1 77 TYR n 1 78 GLN n 1 79 GLU n 1 80 GLN n 1 81 THR n 1 82 GLY n 1 83 GLY n 2 1 GLY n 2 2 SER n 2 3 GLY n 2 4 ALA n 2 5 GLY n 2 6 GLU n 2 7 ALA n 2 8 GLU n 2 9 GLU n 2 10 ARG n 2 11 VAL n 2 12 VAL n 2 13 VAL n 2 14 ILE n 2 15 SER n 2 16 SER n 2 17 SER n 2 18 GLU n 2 19 ASP n 2 20 SER n 2 21 ASP n 2 22 ALA n 2 23 GLU n 2 24 ASN n 2 25 SER n 2 26 SER n 2 27 SER n 2 28 ARG n 2 29 TYR n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 83 Human ? 'SUMO1, SMT3C, SMT3H3, UBL1, OK/SW-cl.43' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? PLASMID ? ? ? PGEX2T ? ? 2 1 sample 'Biological sequence' 1 29 Human ? 'PML, MYL, PP8675, RNF71, TRIM19' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? PLASMID ? ? ? PGEX2T ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP SUMO1_HUMAN P63165 ? 1 ;KEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTG G ; 17 2 UNP PML_HUMAN P29590 P29590-5 2 SGAGEAEERVVVISSSEDSDAENSSSRE 547 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6UYR A 3 ? 83 ? P63165 17 ? 97 ? 17 97 2 2 6UYR B 2 ? 29 ? P29590 547 ? 574 ? 2 29 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6UYR GLY A 1 ? UNP P63165 ? ? 'expression tag' 15 1 1 6UYR SER A 2 ? UNP P63165 ? ? 'expression tag' 16 2 1 6UYR ALA A 38 ? UNP P63165 CYS 52 'engineered mutation' 52 3 2 6UYR GLY B 1 ? UNP P29590 ? ? 'expression tag' 1 4 2 6UYR TYR B 29 ? UNP P29590 GLU 574 'engineered mutation' 29 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ALY 'L-peptide linking' n 'N(6)-ACETYLLYSINE' ? 'C8 H16 N2 O3' 188.224 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6UYR _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.27 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 45.91 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '100MM SODIUM CACODYLATE PH6.5, 16% PEG3350, 10MM CALCIUM CHLORIDE' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-07-29 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'CLSI BEAMLINE 08ID-1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9795 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 08ID-1 _diffrn_source.pdbx_synchrotron_site CLSI # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6UYR _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.3 _reflns.d_resolution_low 32.797 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 28366 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.36 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.0 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 16.26 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.3 _reflns_shell.d_res_low 1.347 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 2449 _reflns_shell.percent_possible_all 85.27 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.392 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 58.620 _refine.B_iso_mean 20.6163 _refine.B_iso_min 10.780 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6UYR _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.3000 _refine.ls_d_res_low 32.7970 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 28360 _refine.ls_number_reflns_R_free 2000 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.3600 _refine.ls_percent_reflns_R_free 7.0500 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1574 _refine.ls_R_factor_R_free 0.1733 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1561 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.340 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4WJO _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 17.1500 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1500 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 1.3000 _refine_hist.d_res_low 32.7970 _refine_hist.number_atoms_solvent 126 _refine_hist.number_atoms_total 872 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 91 _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent 33.10 _refine_hist.pdbx_number_atoms_protein 746 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.3005 1.3330 . . 115 1509 80.0000 . . . 0.3325 0.0000 0.3163 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.3330 1.3690 . . 141 1868 98.0000 . . . 0.2777 0.0000 0.2550 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.3690 1.4093 . . 142 1875 100.0000 . . . 0.2678 0.0000 0.2211 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.4093 1.4548 . . 142 1860 100.0000 . . . 0.2334 0.0000 0.1813 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.4548 1.5068 . . 142 1883 100.0000 . . . 0.1953 0.0000 0.1502 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.5068 1.5671 . . 145 1889 100.0000 . . . 0.2079 0.0000 0.1367 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.5671 1.6384 . . 143 1896 100.0000 . . . 0.1718 0.0000 0.1249 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.6384 1.7248 . . 143 1888 100.0000 . . . 0.1613 0.0000 0.1298 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7248 1.8329 . . 145 1915 100.0000 . . . 0.1623 0.0000 0.1263 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8329 1.9744 . . 145 1905 100.0000 . . . 0.1577 0.0000 0.1294 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.9744 2.1730 . . 146 1923 100.0000 . . . 0.1459 0.0000 0.1302 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.1730 2.4874 . . 147 1932 100.0000 . . . 0.1737 0.0000 0.1448 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.4874 3.1334 . . 148 1961 100.0000 . . . 0.1782 0.0000 0.1613 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.1334 32.797 . . 156 2056 100.0000 . . . 0.1579 0.0000 0.1712 . . . . . . . . . . . # _struct.entry_id 6UYR _struct.title 'Crystal structure of K46-acetylated SUMO1 in complex with PML-SIM' _struct.pdbx_descriptor 'Small ubiquitin-related modifier 1, Protein PML' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6UYR _struct_keywords.text 'SUMO1, PML, SUMO INTERACTION MOTIF, PHOSPHOSIM, NUCLEAR PROTEIN-PROTEIN BINDING complex' _struct_keywords.pdbx_keywords 'NUCLEAR PROTEIN/PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 LEU A 30 ? GLY A 42 ? LEU A 44 GLY A 56 1 ? 13 HELX_P HELX_P2 AA2 PRO A 44 ? ASN A 46 ? PRO A 58 ASN A 60 5 ? 3 HELX_P HELX_P3 AA3 THR A 62 ? GLY A 67 ? THR A 76 GLY A 81 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A LYS 31 C ? ? ? 1_555 A ALY 32 N ? ? A LYS 45 A ALY 46 1_555 ? ? ? ? ? ? ? 1.326 ? covale2 covale both ? A ALY 32 C ? ? ? 1_555 A LEU 33 N ? ? A ALY 46 A LEU 47 1_555 ? ? ? ? ? ? ? 1.328 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? parallel AA1 4 5 ? anti-parallel AA1 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLN A 55 ? ARG A 56 ? GLN A 69 ARG A 70 AA1 2 LEU A 48 ? PHE A 52 ? LEU A 62 PHE A 66 AA1 3 VAL A 73 ? GLN A 78 ? VAL A 87 GLN A 92 AA1 4 ILE A 8 ? ILE A 13 ? ILE A 22 ILE A 27 AA1 5 GLU A 19 ? VAL A 24 ? GLU A 33 VAL A 38 AA1 6 VAL B 11 ? VAL B 13 ? VAL B 11 VAL B 13 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O GLN A 55 ? O GLN A 69 N PHE A 52 ? N PHE A 66 AA1 2 3 N LEU A 51 ? N LEU A 65 O GLU A 75 ? O GLU A 89 AA1 3 4 O ILE A 74 ? O ILE A 88 N LYS A 11 ? N LYS A 25 AA1 4 5 N LEU A 10 ? N LEU A 24 O PHE A 22 ? O PHE A 36 AA1 5 6 N LYS A 23 ? N LYS A 37 O VAL B 12 ? O VAL B 12 # _atom_sites.entry_id 6UYR _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.026060 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021245 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015828 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 15 ? ? ? A . n A 1 2 SER 2 16 ? ? ? A . n A 1 3 LYS 3 17 ? ? ? A . n A 1 4 GLU 4 18 ? ? ? A . n A 1 5 GLY 5 19 19 GLY GLY A . n A 1 6 GLU 6 20 20 GLU GLU A . n A 1 7 TYR 7 21 21 TYR TYR A . n A 1 8 ILE 8 22 22 ILE ILE A . n A 1 9 LYS 9 23 23 LYS LYS A . n A 1 10 LEU 10 24 24 LEU LEU A . n A 1 11 LYS 11 25 25 LYS LYS A . n A 1 12 VAL 12 26 26 VAL VAL A . n A 1 13 ILE 13 27 27 ILE ILE A . n A 1 14 GLY 14 28 28 GLY GLY A . n A 1 15 GLN 15 29 29 GLN GLN A . n A 1 16 ASP 16 30 30 ASP ASP A . n A 1 17 SER 17 31 31 SER SER A . n A 1 18 SER 18 32 32 SER SER A . n A 1 19 GLU 19 33 33 GLU GLU A . n A 1 20 ILE 20 34 34 ILE ILE A . n A 1 21 HIS 21 35 35 HIS HIS A . n A 1 22 PHE 22 36 36 PHE PHE A . n A 1 23 LYS 23 37 37 LYS LYS A . n A 1 24 VAL 24 38 38 VAL VAL A . n A 1 25 LYS 25 39 39 LYS LYS A . n A 1 26 MET 26 40 40 MET MET A . n A 1 27 THR 27 41 41 THR THR A . n A 1 28 THR 28 42 42 THR THR A . n A 1 29 HIS 29 43 43 HIS HIS A . n A 1 30 LEU 30 44 44 LEU LEU A . n A 1 31 LYS 31 45 45 LYS LYS A . n A 1 32 ALY 32 46 46 ALY ALY A . n A 1 33 LEU 33 47 47 LEU LEU A . n A 1 34 LYS 34 48 48 LYS LYS A . n A 1 35 GLU 35 49 49 GLU GLU A . n A 1 36 SER 36 50 50 SER SER A . n A 1 37 TYR 37 51 51 TYR TYR A . n A 1 38 ALA 38 52 52 ALA ALA A . n A 1 39 GLN 39 53 53 GLN GLN A . n A 1 40 ARG 40 54 54 ARG ARG A . n A 1 41 GLN 41 55 55 GLN GLN A . n A 1 42 GLY 42 56 56 GLY GLY A . n A 1 43 VAL 43 57 57 VAL VAL A . n A 1 44 PRO 44 58 58 PRO PRO A . n A 1 45 MET 45 59 59 MET MET A . n A 1 46 ASN 46 60 60 ASN ASN A . n A 1 47 SER 47 61 61 SER SER A . n A 1 48 LEU 48 62 62 LEU LEU A . n A 1 49 ARG 49 63 63 ARG ARG A . n A 1 50 PHE 50 64 64 PHE PHE A . n A 1 51 LEU 51 65 65 LEU LEU A . n A 1 52 PHE 52 66 66 PHE PHE A . n A 1 53 GLU 53 67 67 GLU GLU A . n A 1 54 GLY 54 68 68 GLY GLY A . n A 1 55 GLN 55 69 69 GLN GLN A . n A 1 56 ARG 56 70 70 ARG ARG A . n A 1 57 ILE 57 71 71 ILE ILE A . n A 1 58 ALA 58 72 72 ALA ALA A . n A 1 59 ASP 59 73 73 ASP ASP A . n A 1 60 ASN 60 74 74 ASN ASN A . n A 1 61 HIS 61 75 75 HIS HIS A . n A 1 62 THR 62 76 76 THR THR A . n A 1 63 PRO 63 77 77 PRO PRO A . n A 1 64 LYS 64 78 78 LYS LYS A . n A 1 65 GLU 65 79 79 GLU GLU A . n A 1 66 LEU 66 80 80 LEU LEU A . n A 1 67 GLY 67 81 81 GLY GLY A . n A 1 68 MET 68 82 82 MET MET A . n A 1 69 GLU 69 83 83 GLU GLU A . n A 1 70 GLU 70 84 84 GLU GLU A . n A 1 71 GLU 71 85 85 GLU GLU A . n A 1 72 ASP 72 86 86 ASP ASP A . n A 1 73 VAL 73 87 87 VAL VAL A . n A 1 74 ILE 74 88 88 ILE ILE A . n A 1 75 GLU 75 89 89 GLU GLU A . n A 1 76 VAL 76 90 90 VAL VAL A . n A 1 77 TYR 77 91 91 TYR TYR A . n A 1 78 GLN 78 92 92 GLN GLN A . n A 1 79 GLU 79 93 93 GLU GLU A . n A 1 80 GLN 80 94 ? ? ? A . n A 1 81 THR 81 95 ? ? ? A . n A 1 82 GLY 82 96 ? ? ? A . n A 1 83 GLY 83 97 ? ? ? A . n B 2 1 GLY 1 1 ? ? ? B . n B 2 2 SER 2 2 ? ? ? B . n B 2 3 GLY 3 3 ? ? ? B . n B 2 4 ALA 4 4 ? ? ? B . n B 2 5 GLY 5 5 ? ? ? B . n B 2 6 GLU 6 6 6 GLU GLU B . n B 2 7 ALA 7 7 7 ALA ALA B . n B 2 8 GLU 8 8 8 GLU GLU B . n B 2 9 GLU 9 9 9 GLU GLU B . n B 2 10 ARG 10 10 10 ARG ARG B . n B 2 11 VAL 11 11 11 VAL VAL B . n B 2 12 VAL 12 12 12 VAL VAL B . n B 2 13 VAL 13 13 13 VAL VAL B . n B 2 14 ILE 14 14 14 ILE ILE B . n B 2 15 SER 15 15 15 SER SER B . n B 2 16 SER 16 16 ? ? ? B . n B 2 17 SER 17 17 ? ? ? B . n B 2 18 GLU 18 18 ? ? ? B . n B 2 19 ASP 19 19 ? ? ? B . n B 2 20 SER 20 20 ? ? ? B . n B 2 21 ASP 21 21 ? ? ? B . n B 2 22 ALA 22 22 ? ? ? B . n B 2 23 GLU 23 23 ? ? ? B . n B 2 24 ASN 24 24 24 ASN ASN B . n B 2 25 SER 25 25 25 SER SER B . n B 2 26 SER 26 26 26 SER SER B . n B 2 27 SER 27 27 27 SER SER B . n B 2 28 ARG 28 28 28 ARG ARG B . n B 2 29 TYR 29 29 29 TYR TYR B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 101 27 HOH HOH A . C 3 HOH 2 102 60 HOH HOH A . C 3 HOH 3 103 33 HOH HOH A . C 3 HOH 4 104 76 HOH HOH A . C 3 HOH 5 105 19 HOH HOH A . C 3 HOH 6 106 93 HOH HOH A . C 3 HOH 7 107 70 HOH HOH A . C 3 HOH 8 108 28 HOH HOH A . C 3 HOH 9 109 55 HOH HOH A . C 3 HOH 10 110 112 HOH HOH A . C 3 HOH 11 111 53 HOH HOH A . C 3 HOH 12 112 58 HOH HOH A . C 3 HOH 13 113 74 HOH HOH A . C 3 HOH 14 114 113 HOH HOH A . C 3 HOH 15 115 24 HOH HOH A . C 3 HOH 16 116 4 HOH HOH A . C 3 HOH 17 117 44 HOH HOH A . C 3 HOH 18 118 20 HOH HOH A . C 3 HOH 19 119 46 HOH HOH A . C 3 HOH 20 120 79 HOH HOH A . C 3 HOH 21 121 10 HOH HOH A . C 3 HOH 22 122 36 HOH HOH A . C 3 HOH 23 123 21 HOH HOH A . C 3 HOH 24 124 43 HOH HOH A . C 3 HOH 25 125 13 HOH HOH A . C 3 HOH 26 126 14 HOH HOH A . C 3 HOH 27 127 22 HOH HOH A . C 3 HOH 28 128 61 HOH HOH A . C 3 HOH 29 129 15 HOH HOH A . C 3 HOH 30 130 83 HOH HOH A . C 3 HOH 31 131 72 HOH HOH A . C 3 HOH 32 132 52 HOH HOH A . C 3 HOH 33 133 1 HOH HOH A . C 3 HOH 34 134 45 HOH HOH A . C 3 HOH 35 135 100 HOH HOH A . C 3 HOH 36 136 7 HOH HOH A . C 3 HOH 37 137 118 HOH HOH A . C 3 HOH 38 138 68 HOH HOH A . C 3 HOH 39 139 32 HOH HOH A . C 3 HOH 40 140 31 HOH HOH A . C 3 HOH 41 141 9 HOH HOH A . C 3 HOH 42 142 67 HOH HOH A . C 3 HOH 43 143 42 HOH HOH A . C 3 HOH 44 144 98 HOH HOH A . C 3 HOH 45 145 5 HOH HOH A . C 3 HOH 46 146 122 HOH HOH A . C 3 HOH 47 147 62 HOH HOH A . C 3 HOH 48 148 121 HOH HOH A . C 3 HOH 49 149 94 HOH HOH A . C 3 HOH 50 150 37 HOH HOH A . C 3 HOH 51 151 12 HOH HOH A . C 3 HOH 52 152 119 HOH HOH A . C 3 HOH 53 153 54 HOH HOH A . C 3 HOH 54 154 69 HOH HOH A . C 3 HOH 55 155 8 HOH HOH A . C 3 HOH 56 156 3 HOH HOH A . C 3 HOH 57 157 41 HOH HOH A . C 3 HOH 58 158 101 HOH HOH A . C 3 HOH 59 159 51 HOH HOH A . C 3 HOH 60 160 39 HOH HOH A . C 3 HOH 61 161 23 HOH HOH A . C 3 HOH 62 162 48 HOH HOH A . C 3 HOH 63 163 16 HOH HOH A . C 3 HOH 64 164 75 HOH HOH A . C 3 HOH 65 165 6 HOH HOH A . C 3 HOH 66 166 87 HOH HOH A . C 3 HOH 67 167 35 HOH HOH A . C 3 HOH 68 168 84 HOH HOH A . C 3 HOH 69 169 38 HOH HOH A . C 3 HOH 70 170 86 HOH HOH A . C 3 HOH 71 171 109 HOH HOH A . C 3 HOH 72 172 34 HOH HOH A . C 3 HOH 73 173 77 HOH HOH A . C 3 HOH 74 174 25 HOH HOH A . C 3 HOH 75 175 78 HOH HOH A . C 3 HOH 76 176 111 HOH HOH A . C 3 HOH 77 177 56 HOH HOH A . C 3 HOH 78 178 29 HOH HOH A . C 3 HOH 79 179 123 HOH HOH A . C 3 HOH 80 180 50 HOH HOH A . C 3 HOH 81 181 81 HOH HOH A . C 3 HOH 82 182 96 HOH HOH A . C 3 HOH 83 183 108 HOH HOH A . C 3 HOH 84 184 117 HOH HOH A . C 3 HOH 85 185 103 HOH HOH A . C 3 HOH 86 186 106 HOH HOH A . C 3 HOH 87 187 91 HOH HOH A . C 3 HOH 88 188 99 HOH HOH A . C 3 HOH 89 189 104 HOH HOH A . C 3 HOH 90 190 17 HOH HOH A . C 3 HOH 91 191 64 HOH HOH A . C 3 HOH 92 192 85 HOH HOH A . C 3 HOH 93 193 82 HOH HOH A . C 3 HOH 94 194 124 HOH HOH A . C 3 HOH 95 195 89 HOH HOH A . C 3 HOH 96 196 105 HOH HOH A . C 3 HOH 97 197 95 HOH HOH A . C 3 HOH 98 198 107 HOH HOH A . C 3 HOH 99 199 126 HOH HOH A . C 3 HOH 100 200 66 HOH HOH A . C 3 HOH 101 201 114 HOH HOH A . C 3 HOH 102 202 102 HOH HOH A . D 3 HOH 1 101 88 HOH HOH B . D 3 HOH 2 102 57 HOH HOH B . D 3 HOH 3 103 125 HOH HOH B . D 3 HOH 4 104 11 HOH HOH B . D 3 HOH 5 105 30 HOH HOH B . D 3 HOH 6 106 80 HOH HOH B . D 3 HOH 7 107 92 HOH HOH B . D 3 HOH 8 108 73 HOH HOH B . D 3 HOH 9 109 49 HOH HOH B . D 3 HOH 10 110 26 HOH HOH B . D 3 HOH 11 111 2 HOH HOH B . D 3 HOH 12 112 18 HOH HOH B . D 3 HOH 13 113 63 HOH HOH B . D 3 HOH 14 114 116 HOH HOH B . D 3 HOH 15 115 40 HOH HOH B . D 3 HOH 16 116 120 HOH HOH B . D 3 HOH 17 117 71 HOH HOH B . D 3 HOH 18 118 90 HOH HOH B . D 3 HOH 19 119 65 HOH HOH B . D 3 HOH 20 120 47 HOH HOH B . D 3 HOH 21 121 115 HOH HOH B . D 3 HOH 22 122 110 HOH HOH B . D 3 HOH 23 123 59 HOH HOH B . D 3 HOH 24 124 97 HOH HOH B . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id ALY _pdbx_struct_mod_residue.label_seq_id 32 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id ALY _pdbx_struct_mod_residue.auth_seq_id 46 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id LYS _pdbx_struct_mod_residue.details 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-11-27 2 'Structure model' 1 1 2020-01-08 3 'Structure model' 1 2 2020-02-19 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' pdbx_audit_support 4 3 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.pdbx_database_id_PubMed' 8 2 'Structure model' '_citation.title' 9 2 'Structure model' '_citation.year' 10 2 'Structure model' '_citation_author.identifier_ORCID' 11 2 'Structure model' '_pdbx_audit_support.funding_organization' 12 3 'Structure model' '_citation.journal_volume' 13 3 'Structure model' '_citation.page_first' 14 3 'Structure model' '_citation.page_last' 15 3 'Structure model' '_citation.year' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.14-3260_1496 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _pdbx_entry_details.entry_id 6UYR _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HD22 A ASN 74 ? ? O A HOH 105 ? ? 1.52 2 1 O A HOH 137 ? ? O A HOH 181 ? ? 1.87 3 1 O A HOH 101 ? ? O A HOH 122 ? ? 1.91 4 1 OG A SER 31 ? ? O A HOH 101 ? ? 1.95 5 1 O A HOH 157 ? ? O A HOH 175 ? ? 1.97 6 1 O A HOH 119 ? ? O A HOH 183 ? ? 1.97 7 1 O A HOH 108 ? ? O A HOH 201 ? ? 2.10 8 1 N A GLY 19 ? ? O A HOH 102 ? ? 2.12 9 1 NZ A LYS 23 ? ? O A HOH 103 ? ? 2.12 10 1 O A HOH 135 ? ? O B HOH 122 ? ? 2.16 11 1 O A HOH 112 ? ? O A HOH 190 ? ? 2.18 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 158 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 197 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_545 _pdbx_validate_symm_contact.dist 1.97 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 15 ? A GLY 1 2 1 Y 1 A SER 16 ? A SER 2 3 1 Y 1 A LYS 17 ? A LYS 3 4 1 Y 1 A GLU 18 ? A GLU 4 5 1 Y 1 A GLN 94 ? A GLN 80 6 1 Y 1 A THR 95 ? A THR 81 7 1 Y 1 A GLY 96 ? A GLY 82 8 1 Y 1 A GLY 97 ? A GLY 83 9 1 Y 1 B GLY 1 ? B GLY 1 10 1 Y 1 B SER 2 ? B SER 2 11 1 Y 1 B GLY 3 ? B GLY 3 12 1 Y 1 B ALA 4 ? B ALA 4 13 1 Y 1 B GLY 5 ? B GLY 5 14 1 Y 1 B SER 16 ? B SER 16 15 1 Y 1 B SER 17 ? B SER 17 16 1 Y 1 B GLU 18 ? B GLU 18 17 1 Y 1 B ASP 19 ? B ASP 19 18 1 Y 1 B SER 20 ? B SER 20 19 1 Y 1 B ASP 21 ? B ASP 21 20 1 Y 1 B ALA 22 ? B ALA 22 21 1 Y 1 B GLU 23 ? B GLU 23 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Canadian Institutes of Health Research (CIHR)' Canada 74739 1 'Canadian Institutes of Health Research (CIHR)' Canada 130414 2 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id ALY _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id ALY _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'isothermal titration calorimetry' _pdbx_struct_assembly_auth_evidence.details ? #