HEADER MEMBRANE PROTEIN 14-NOV-19 6UZ6 TITLE CRYSTAL STRUCTURE OF GLUN1/GLUN2A-4M MUTANT LIGAND-BINDING DOMAIN IN TITLE 2 COMPLEX WITH GLYCINE AND GLUTAMATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE RECEPTOR IONOTROPIC, NMDA 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIGAND-BINDING DOMAIN (UNP RESIDUES 415-565,684-821); COMPND 5 SYNONYM: GLUN1,GLUTAMATE [NMDA] RECEPTOR SUBUNIT ZETA-1,N-METHYL-D- COMPND 6 ASPARTATE RECEPTOR SUBUNIT NR1,NMD-R1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: GLUTAMATE RECEPTOR IONOTROPIC, NMDA 2A; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: LIGAND-BINDING DOMAIN (UNP RESIDUES 402-539,661-800); COMPND 12 SYNONYM: GLUN2A,GLUTAMATE [NMDA] RECEPTOR SUBUNIT EPSILON-1,N-METHYL COMPND 13 D-ASPARTATE RECEPTOR SUBTYPE 2A,NR2A; COMPND 14 ENGINEERED: YES; COMPND 15 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: GRIN1, NMDAR1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ORIGAMIB (DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 11 ORGANISM_COMMON: RAT; SOURCE 12 ORGANISM_TAXID: 10116; SOURCE 13 GENE: GRIN2A; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: ORIGAMIB (DE3) KEYWDS NMDAR, LIGAND-BINDING DOMAIN, AGONIST, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.X.WANG,H.FURUKAWA REVDAT 3 11-OCT-23 6UZ6 1 REMARK REVDAT 2 05-FEB-20 6UZ6 1 JRNL REVDAT 1 29-JAN-20 6UZ6 0 JRNL AUTH J.X.WANG,M.W.IRVINE,E.S.BURNELL,K.SAPKOTA,R.J.THATCHER,M.LI, JRNL AUTH 2 N.SIMOROWSKI,A.VOLIANSKIS,G.L.COLLINGRIDGE,D.T.MONAGHAN, JRNL AUTH 3 D.E.JANE,H.FURUKAWA JRNL TITL STRUCTURAL BASIS OF SUBTYPE-SELECTIVE COMPETITIVE ANTAGONISM JRNL TITL 2 FOR GLUN2C/2D-CONTAINING NMDA RECEPTORS. JRNL REF NAT COMMUN V. 11 423 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 31969570 JRNL DOI 10.1038/S41467-020-14321-0 REMARK 2 REMARK 2 RESOLUTION. 1.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 71406 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 3628 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.0700 - 4.9100 1.00 2910 166 0.1786 0.1918 REMARK 3 2 4.9100 - 3.9000 1.00 2769 156 0.1397 0.1734 REMARK 3 3 3.9000 - 3.4000 1.00 2752 155 0.1636 0.1888 REMARK 3 4 3.4000 - 3.0900 1.00 2726 165 0.1790 0.2190 REMARK 3 5 3.0900 - 2.8700 1.00 2721 149 0.1971 0.2181 REMARK 3 6 2.8700 - 2.7000 1.00 2734 145 0.1884 0.2273 REMARK 3 7 2.7000 - 2.5700 1.00 2716 121 0.1943 0.2321 REMARK 3 8 2.5700 - 2.4600 1.00 2729 133 0.1941 0.2396 REMARK 3 9 2.4600 - 2.3600 1.00 2673 162 0.1844 0.2296 REMARK 3 10 2.3600 - 2.2800 1.00 2720 117 0.1833 0.2529 REMARK 3 11 2.2800 - 2.2100 1.00 2675 146 0.1864 0.2059 REMARK 3 12 2.2100 - 2.1400 1.00 2702 150 0.1824 0.2234 REMARK 3 13 2.1400 - 2.0900 1.00 2690 139 0.1869 0.2286 REMARK 3 14 2.0900 - 2.0400 1.00 2696 152 0.1860 0.2398 REMARK 3 15 2.0400 - 1.9900 1.00 2658 155 0.1835 0.2088 REMARK 3 16 1.9900 - 1.9500 1.00 2655 145 0.1887 0.2255 REMARK 3 17 1.9500 - 1.9100 1.00 2707 128 0.1791 0.1969 REMARK 3 18 1.9100 - 1.8700 1.00 2682 146 0.1874 0.2213 REMARK 3 19 1.8700 - 1.8400 1.00 2656 153 0.1983 0.2447 REMARK 3 20 1.8400 - 1.8100 0.99 2662 129 0.1950 0.2520 REMARK 3 21 1.8100 - 1.7800 0.99 2613 157 0.2147 0.2525 REMARK 3 22 1.7800 - 1.7500 0.94 2515 132 0.2029 0.2170 REMARK 3 23 1.7500 - 1.7300 0.86 2322 115 0.2058 0.2178 REMARK 3 24 1.7300 - 1.7000 0.81 2131 108 0.2007 0.2562 REMARK 3 25 1.7000 - 1.6800 0.75 2049 98 0.2097 0.2391 REMARK 3 26 1.6800 - 1.6600 0.72 1915 106 0.2019 0.2387 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.175 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.333 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4676 REMARK 3 ANGLE : 0.997 6335 REMARK 3 CHIRALITY : 0.066 701 REMARK 3 PLANARITY : 0.007 815 REMARK 3 DIHEDRAL : 13.898 2854 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 40.6410 75.7939 25.8619 REMARK 3 T TENSOR REMARK 3 T11: 0.1209 T22: 0.1209 REMARK 3 T33: 0.1350 T12: 0.0112 REMARK 3 T13: -0.0099 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 0.4889 L22: 0.3341 REMARK 3 L33: 0.7669 L12: 0.0276 REMARK 3 L13: 0.3456 L23: 0.1157 REMARK 3 S TENSOR REMARK 3 S11: -0.0477 S12: -0.0530 S13: 0.0543 REMARK 3 S21: 0.0263 S22: 0.0363 S23: -0.0701 REMARK 3 S31: -0.0685 S32: -0.0494 S33: -0.0048 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UZ6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1000245473. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92013 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS, POINTLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71406 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.660 REMARK 200 RESOLUTION RANGE LOW (A) : 73.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 4NF8 REMARK 200 REMARK 200 REMARK: LONG ROD-SHAPED CRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, PH 7.0, 75 MM SODIUM REMARK 280 CHLORIDE, 18% PEG2000 MME, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.31750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.57550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.03150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.57550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.31750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.03150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 MET A 2 REMARK 465 ASN A 99 REMARK 465 ASN A 100 REMARK 465 CYS A 290 REMARK 465 ASP A 291 REMARK 465 SER A 292 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 97 CG CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 SER A 3 N CB OG REMARK 480 THR A 4 OG1 CG2 REMARK 480 LYS A 29 CD CE NZ REMARK 480 GLU A 30 CG CD OE1 OE2 REMARK 480 ASN A 35 CG REMARK 480 ASN A 48 CB CG OD1 ND2 REMARK 480 HIS A 57 ND1 CE1 NE2 REMARK 480 LYS A 73 NZ REMARK 480 ARG A 76 NE CZ NH1 NH2 REMARK 480 ASN A 79 OD1 REMARK 480 GLU A 96 CD REMARK 480 ASN A 102 OD1 REMARK 480 LYS A 103 CG CD CE NZ REMARK 480 LYS A 104 CE NZ REMARK 480 GLU A 105 CG OE1 REMARK 480 GLU A 136 OE2 REMARK 480 LYS A 151 CE NZ REMARK 480 LYS A 152 NZ REMARK 480 ARG A 155 CB CG CD NE CZ NH1 NH2 REMARK 480 ASP A 169 OD2 REMARK 480 LYS A 170 CG CD CE NZ REMARK 480 ARG A 186 CZ NH1 REMARK 480 GLU A 190 CG REMARK 480 GLU A 199 CG OE1 OE2 REMARK 480 LYS A 217 CE NZ REMARK 480 THR A 241 CG2 REMARK 480 GLU A 243 OE2 REMARK 480 ARG A 247 CZ NH2 REMARK 480 GLN A 262 CD OE1 REMARK 480 LYS A 282 CD CE NZ REMARK 480 ARG A 286 NE REMARK 480 TYR A 287 CD1 CE1 REMARK 480 GLU A 289 CB CG CD OE1 OE2 REMARK 480 ASP B 5 CG OD1 OD2 REMARK 480 ASP B 6 CG OD1 OD2 REMARK 480 ASP B 26 CG OD1 OD2 REMARK 480 LEU B 28 CG CD1 CD2 REMARK 480 GLU B 30 CG CD OE1 OE2 REMARK 480 VAL B 33 CB CG1 CG2 REMARK 480 ARG B 34 CD NE CZ NH1 NH2 REMARK 480 LYS B 41 NZ REMARK 480 LYS B 44 CD CE NZ REMARK 480 GLU B 51 CG REMARK 480 LYS B 56 NZ REMARK 480 ARG B 72 CG CD NE CZ NH1 NH2 REMARK 480 LYS B 75 CE NZ REMARK 480 GLN B 145 CB CG CD OE1 NE2 REMARK 480 LYS B 152 CG CD CE NZ REMARK 480 LYS B 153 NZ REMARK 480 SER B 161 OG REMARK 480 ARG B 195 NE CZ NH1 NH2 REMARK 480 LYS B 208 CD CE NZ REMARK 480 GLU B 227 CG CD OE1 OE2 REMARK 480 LYS B 230 CE NZ REMARK 480 ILE B 234 CD1 REMARK 480 SER B 236 CA CB OG REMARK 480 GLY B 237 CA REMARK 480 ARG B 257 CD NE CZ NH1 NH2 REMARK 480 GLU B 273 CG CD OE1 OE2 REMARK 480 GLU B 274 CD OE1 OE2 REMARK 480 THR B 277 OG1 REMARK 480 ILE B 283 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 610 O HOH B 641 1.80 REMARK 500 O HOH B 564 O HOH B 649 1.92 REMARK 500 O HOH A 1319 O HOH A 1365 1.94 REMARK 500 O HOH B 669 O HOH B 677 1.95 REMARK 500 O HOH A 1111 O HOH B 674 1.95 REMARK 500 OE2 GLU A 30 O HOH A 1101 1.99 REMARK 500 O HOH A 1183 O HOH A 1349 2.00 REMARK 500 O HOH B 424 O HOH B 585 2.00 REMARK 500 O HOH B 434 O HOH B 484 2.01 REMARK 500 O ARG B 34 O HOH B 401 2.04 REMARK 500 O HOH B 401 O HOH B 577 2.04 REMARK 500 O HOH A 1102 O HOH A 1155 2.05 REMARK 500 O HOH A 1123 O HOH A 1153 2.07 REMARK 500 O HOH A 1108 O HOH A 1343 2.09 REMARK 500 O HOH B 499 O HOH B 619 2.09 REMARK 500 O HOH B 543 O HOH B 649 2.09 REMARK 500 O HOH A 1128 O HOH A 1343 2.09 REMARK 500 O HOH A 1227 O HOH A 1334 2.11 REMARK 500 O HOH B 539 O HOH B 669 2.12 REMARK 500 O HOH B 697 O HOH B 700 2.13 REMARK 500 ND2 ASN B 220 O HOH B 402 2.13 REMARK 500 O HOH A 1240 O HOH A 1381 2.13 REMARK 500 O HOH B 615 O HOH B 655 2.13 REMARK 500 O HOH B 456 O HOH B 628 2.14 REMARK 500 OG SER A 248 O HOH A 1102 2.15 REMARK 500 O HOH B 592 O HOH B 628 2.15 REMARK 500 O HOH A 1368 O HOH B 670 2.15 REMARK 500 O HOH A 1387 O HOH B 670 2.16 REMARK 500 O HOH B 441 O HOH B 670 2.17 REMARK 500 O HOH A 1295 O HOH A 1336 2.17 REMARK 500 O HOH A 1125 O HOH A 1332 2.19 REMARK 500 O HOH B 508 O HOH B 696 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 13 86.85 -165.81 REMARK 500 GLN A 144 -150.78 -156.92 REMARK 500 GLU A 243 171.92 62.90 REMARK 500 TYR A 287 25.48 -170.06 REMARK 500 GLN A 288 -70.57 -134.38 REMARK 500 GLU B 16 94.33 -164.50 REMARK 500 ARG B 34 -135.20 55.39 REMARK 500 LYS B 75 61.02 66.80 REMARK 500 LYS B 87 -113.74 -122.80 REMARK 500 SER B 128 173.20 -59.46 REMARK 500 ASN B 171 6.90 86.25 REMARK 500 THR B 243 -155.39 -154.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1398 DISTANCE = 6.53 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLU B 301 DBREF 6UZ6 A 2 152 UNP P35439 NMDZ1_RAT 415 565 DBREF 6UZ6 A 155 292 UNP P35439 NMDZ1_RAT 684 821 DBREF 6UZ6 B 5 142 UNP Q00959 NMDE1_RAT 402 539 DBREF 6UZ6 B 145 284 UNP Q00959 NMDE1_RAT 661 800 SEQADV 6UZ6 GLY A 1 UNP P35439 EXPRESSION TAG SEQADV 6UZ6 GLY A 153 UNP P35439 LINKER SEQADV 6UZ6 THR A 154 UNP P35439 LINKER SEQADV 6UZ6 ARG B 17 UNP Q00959 ALA 414 ENGINEERED MUTATION SEQADV 6UZ6 GLY B 143 UNP Q00959 LINKER SEQADV 6UZ6 THR B 144 UNP Q00959 LINKER SEQADV 6UZ6 MET B 222 UNP Q00959 LYS 738 ENGINEERED MUTATION SEQADV 6UZ6 ARG B 224 UNP Q00959 GLY 740 ENGINEERED MUTATION SEQADV 6UZ6 LYS B 225 UNP Q00959 ARG 741 ENGINEERED MUTATION SEQADV 6UZ6 THR B 242 UNP Q00959 SER 758 CONFLICT SEQRES 1 A 292 GLY MET SER THR ARG LEU LYS ILE VAL THR ILE HIS GLN SEQRES 2 A 292 GLU PRO PHE VAL TYR VAL LYS PRO THR MET SER ASP GLY SEQRES 3 A 292 THR CYS LYS GLU GLU PHE THR VAL ASN GLY ASP PRO VAL SEQRES 4 A 292 LYS LYS VAL ILE CYS THR GLY PRO ASN ASP THR SER PRO SEQRES 5 A 292 GLY SER PRO ARG HIS THR VAL PRO GLN CYS CYS TYR GLY SEQRES 6 A 292 PHE CYS ILE ASP LEU LEU ILE LYS LEU ALA ARG THR MET SEQRES 7 A 292 ASN PHE THR TYR GLU VAL HIS LEU VAL ALA ASP GLY LYS SEQRES 8 A 292 PHE GLY THR GLN GLU ARG VAL ASN ASN SER ASN LYS LYS SEQRES 9 A 292 GLU TRP ASN GLY MET MET GLY GLU LEU LEU SER GLY GLN SEQRES 10 A 292 ALA ASP MET ILE VAL ALA PRO LEU THR ILE ASN ASN GLU SEQRES 11 A 292 ARG ALA GLN TYR ILE GLU PHE SER LYS PRO PHE LYS TYR SEQRES 12 A 292 GLN GLY LEU THR ILE LEU VAL LYS LYS GLY THR ARG ILE SEQRES 13 A 292 THR GLY ILE ASN ASP PRO ARG LEU ARG ASN PRO SER ASP SEQRES 14 A 292 LYS PHE ILE TYR ALA THR VAL LYS GLN SER SER VAL ASP SEQRES 15 A 292 ILE TYR PHE ARG ARG GLN VAL GLU LEU SER THR MET TYR SEQRES 16 A 292 ARG HIS MET GLU LYS HIS ASN TYR GLU SER ALA ALA GLU SEQRES 17 A 292 ALA ILE GLN ALA VAL ARG ASP ASN LYS LEU HIS ALA PHE SEQRES 18 A 292 ILE TRP ASP SER ALA VAL LEU GLU PHE GLU ALA SER GLN SEQRES 19 A 292 LYS CYS ASP LEU VAL THR THR GLY GLU LEU PHE PHE ARG SEQRES 20 A 292 SER GLY PHE GLY ILE GLY MET ARG LYS ASP SER PRO TRP SEQRES 21 A 292 LYS GLN ASN VAL SER LEU SER ILE LEU LYS SER HIS GLU SEQRES 22 A 292 ASN GLY PHE MET GLU ASP LEU ASP LYS THR TRP VAL ARG SEQRES 23 A 292 TYR GLN GLU CYS ASP SER SEQRES 1 B 280 ASP ASP ASN HIS LEU SER ILE VAL THR LEU GLU GLU ARG SEQRES 2 B 280 PRO PHE VAL ILE VAL GLU ASP ILE ASP PRO LEU THR GLU SEQRES 3 B 280 THR CYS VAL ARG ASN THR VAL PRO CYS ARG LYS PHE VAL SEQRES 4 B 280 LYS ILE ASN ASN SER THR ASN GLU GLY MET ASN VAL LYS SEQRES 5 B 280 LYS CYS CYS LYS GLY PHE CYS ILE ASP ILE LEU LYS LYS SEQRES 6 B 280 LEU SER ARG THR VAL LYS PHE THR TYR ASP LEU TYR LEU SEQRES 7 B 280 VAL THR ASN GLY LYS HIS GLY LYS LYS VAL ASN ASN VAL SEQRES 8 B 280 TRP ASN GLY MET ILE GLY GLU VAL VAL TYR GLN ARG ALA SEQRES 9 B 280 VAL MET ALA VAL GLY SER LEU THR ILE ASN GLU GLU ARG SEQRES 10 B 280 SER GLU VAL VAL ASP PHE SER VAL PRO PHE VAL GLU THR SEQRES 11 B 280 GLY ILE SER VAL MET VAL SER ARG GLY THR GLN VAL THR SEQRES 12 B 280 GLY LEU SER ASP LYS LYS PHE GLN ARG PRO HIS ASP TYR SEQRES 13 B 280 SER PRO PRO PHE ARG PHE GLY THR VAL PRO ASN GLY SER SEQRES 14 B 280 THR GLU ARG ASN ILE ARG ASN ASN TYR PRO TYR MET HIS SEQRES 15 B 280 GLN TYR MET THR ARG PHE ASN GLN ARG GLY VAL GLU ASP SEQRES 16 B 280 ALA LEU VAL SER LEU LYS THR GLY LYS LEU ASP ALA PHE SEQRES 17 B 280 ILE TYR ASP ALA ALA VAL LEU ASN TYR MET ALA ARG LYS SEQRES 18 B 280 ASP GLU GLY CYS LYS LEU VAL THR ILE GLY SER GLY TYR SEQRES 19 B 280 ILE PHE ALA THR THR GLY TYR GLY ILE ALA LEU GLN LYS SEQRES 20 B 280 GLY SER PRO TRP LYS ARG GLN ILE ASP LEU ALA LEU LEU SEQRES 21 B 280 GLN PHE VAL GLY ASP GLY GLU MET GLU GLU LEU GLU THR SEQRES 22 B 280 LEU TRP LEU THR GLY ILE CYS HET GLY A1001 5 HET GLU B 301 10 HETNAM GLY GLYCINE HETNAM GLU GLUTAMIC ACID FORMUL 3 GLY C2 H5 N O2 FORMUL 4 GLU C5 H9 N O4 FORMUL 5 HOH *607(H2 O) HELIX 1 AA1 GLY A 65 ASN A 79 1 15 HELIX 2 AA2 ASN A 107 SER A 115 1 9 HELIX 3 AA3 ASN A 128 GLN A 133 1 6 HELIX 4 AA4 ASP A 161 ASN A 166 1 6 HELIX 5 AA5 SER A 179 GLN A 188 1 10 HELIX 6 AA6 LEU A 191 GLU A 199 1 9 HELIX 7 AA7 SER A 205 ASP A 215 1 11 HELIX 8 AA8 SER A 225 LYS A 235 1 11 HELIX 9 AA9 TRP A 260 GLY A 275 1 16 HELIX 10 AB1 GLY A 275 VAL A 285 1 11 HELIX 11 AB2 GLY B 61 LYS B 75 1 15 HELIX 12 AB3 ASN B 97 TYR B 105 1 9 HELIX 13 AB4 ASN B 118 GLU B 123 1 6 HELIX 14 AB5 ASP B 151 ARG B 156 1 6 HELIX 15 AB6 PRO B 157 TYR B 160 5 4 HELIX 16 AB7 GLY B 172 TYR B 182 1 11 HELIX 17 AB8 TYR B 182 THR B 190 1 9 HELIX 18 AB9 ARG B 191 ASN B 193 5 3 HELIX 19 AC1 GLY B 196 THR B 206 1 11 HELIX 20 AC2 ALA B 216 ASP B 226 1 11 HELIX 21 AC3 GLY B 235 GLY B 237 5 3 HELIX 22 AC4 TRP B 255 ASP B 269 1 15 HELIX 23 AC5 GLY B 270 LEU B 280 1 11 SHEET 1 AA1 8 TYR A 18 PRO A 21 0 SHEET 2 AA1 8 THR A 58 TYR A 64 -1 O TYR A 64 N TYR A 18 SHEET 3 AA1 8 VAL A 42 PRO A 47 -1 N CYS A 44 O GLN A 61 SHEET 4 AA1 8 TYR A 82 LEU A 86 1 O LEU A 86 N THR A 45 SHEET 5 AA1 8 LEU A 6 THR A 10 1 N ILE A 8 O GLU A 83 SHEET 6 AA1 8 MET A 120 ILE A 121 1 O MET A 120 N VAL A 9 SHEET 7 AA1 8 GLY A 253 MET A 254 -1 O GLY A 253 N ILE A 121 SHEET 8 AA1 8 GLU A 136 PHE A 137 -1 N GLU A 136 O MET A 254 SHEET 1 AA2 2 GLN A 95 ARG A 97 0 SHEET 2 AA2 2 LYS A 104 TRP A 106 -1 O GLU A 105 N GLU A 96 SHEET 1 AA3 4 TYR A 173 ALA A 174 0 SHEET 2 AA3 4 ALA A 220 ASP A 224 1 O ILE A 222 N ALA A 174 SHEET 3 AA3 4 LYS A 142 LYS A 151 -1 N LEU A 149 O PHE A 221 SHEET 4 AA3 4 LEU A 238 PHE A 250 -1 O VAL A 239 N VAL A 150 SHEET 1 AA4 8 ILE B 21 ASP B 24 0 SHEET 2 AA4 8 GLY B 52 LYS B 60 -1 O LYS B 60 N ILE B 21 SHEET 3 AA4 8 VAL B 37 LYS B 44 -1 N VAL B 37 O CYS B 59 SHEET 4 AA4 8 THR B 77 LEU B 82 1 O LEU B 82 N ARG B 40 SHEET 5 AA4 8 HIS B 8 THR B 13 1 N LEU B 9 O THR B 77 SHEET 6 AA4 8 MET B 110 ALA B 111 1 O MET B 110 N VAL B 12 SHEET 7 AA4 8 ALA B 248 LEU B 249 -1 O ALA B 248 N ALA B 111 SHEET 8 AA4 8 ASP B 126 PHE B 127 -1 N ASP B 126 O LEU B 249 SHEET 1 AA5 2 LYS B 91 VAL B 92 0 SHEET 2 AA5 2 VAL B 95 TRP B 96 -1 O VAL B 95 N VAL B 92 SHEET 1 AA6 4 PHE B 166 GLY B 167 0 SHEET 2 AA6 4 ALA B 211 ASP B 215 1 O ILE B 213 N GLY B 167 SHEET 3 AA6 4 VAL B 132 SER B 141 -1 N MET B 139 O PHE B 212 SHEET 4 AA6 4 LEU B 231 THR B 233 -1 O VAL B 232 N VAL B 140 SHEET 1 AA7 4 PHE B 166 GLY B 167 0 SHEET 2 AA7 4 ALA B 211 ASP B 215 1 O ILE B 213 N GLY B 167 SHEET 3 AA7 4 VAL B 132 SER B 141 -1 N MET B 139 O PHE B 212 SHEET 4 AA7 4 PHE B 240 TYR B 245 -1 O PHE B 240 N ILE B 136 SSBOND 1 CYS A 28 CYS A 62 1555 1555 2.04 SSBOND 2 CYS A 44 CYS A 63 1555 1555 2.05 SSBOND 3 CYS B 32 CYS B 58 1555 1555 2.04 SSBOND 4 CYS B 39 CYS B 59 1555 1555 2.08 SSBOND 5 CYS B 229 CYS B 284 1555 1555 2.04 CISPEP 1 GLU A 14 PRO A 15 0 4.20 CISPEP 2 ARG B 17 PRO B 18 0 5.12 CISPEP 3 LEU B 28 THR B 29 0 10.72 CISPEP 4 SER B 161 PRO B 162 0 -6.23 SITE 1 AC1 8 PHE A 92 PRO A 124 LEU A 125 THR A 126 SITE 2 AC1 8 ARG A 131 SER A 179 SER A 180 ASP A 224 SITE 1 AC2 12 HIS B 88 SER B 114 LEU B 115 THR B 116 SITE 2 AC2 12 ARG B 121 GLY B 172 SER B 173 THR B 174 SITE 3 AC2 12 TYR B 214 ASP B 215 HOH B 485 HOH B 489 CRYST1 54.635 90.063 125.151 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018303 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011103 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007990 0.00000