HEADER MEMBRANE PROTEIN 15-NOV-19 6UZR TITLE CRYSTAL STRUCTURE OF GLUN1/GLUN2A LIGAND-BINDING DOMAIN IN COMPLEX TITLE 2 WITH GLYCINE AND HOMOQUINOLINIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE RECEPTOR IONOTROPIC, NMDA 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIGAND-BINDING DOMAIN (UNP RESIDUES 415-565,684-821); COMPND 5 SYNONYM: GLUN1,GLUTAMATE [NMDA] RECEPTOR SUBUNIT ZETA-1,N-METHYL-D- COMPND 6 ASPARTATE RECEPTOR SUBUNIT NR1,NMD-R1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: GLUTAMATE RECEPTOR IONOTROPIC, NMDA 2A; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: LIGAND-BINDING DOMAIN (UNP RESIDUES 402-539,661-802); COMPND 12 SYNONYM: GLUN2A,GLUTAMATE [NMDA] RECEPTOR SUBUNIT EPSILON-1,N-METHYL COMPND 13 D-ASPARTATE RECEPTOR SUBTYPE 2A,NR2A; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: GRIN1, NMDAR1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ORIGAMIB (DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 11 ORGANISM_COMMON: RAT; SOURCE 12 ORGANISM_TAXID: 10116; SOURCE 13 GENE: GRIN2A; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: ORIGAMIB (DE3) KEYWDS NMDAR, LIGAND-BINDING DOMAIN, AGONIST, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.X.WANG,H.FURUKAWA REVDAT 3 11-OCT-23 6UZR 1 REMARK REVDAT 2 05-FEB-20 6UZR 1 JRNL REVDAT 1 29-JAN-20 6UZR 0 JRNL AUTH J.X.WANG,M.W.IRVINE,E.S.BURNELL,K.SAPKOTA,R.J.THATCHER,M.LI, JRNL AUTH 2 N.SIMOROWSKI,A.VOLIANSKIS,G.L.COLLINGRIDGE,D.T.MONAGHAN, JRNL AUTH 3 D.E.JANE,H.FURUKAWA JRNL TITL STRUCTURAL BASIS OF SUBTYPE-SELECTIVE COMPETITIVE ANTAGONISM JRNL TITL 2 FOR GLUN2C/2D-CONTAINING NMDA RECEPTORS. JRNL REF NAT COMMUN V. 11 423 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 31969570 JRNL DOI 10.1038/S41467-020-14321-0 REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 50584 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 2577 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.3600 - 4.9100 1.00 2866 157 0.1701 0.1670 REMARK 3 2 4.9100 - 3.9000 1.00 2728 156 0.1349 0.1828 REMARK 3 3 3.9000 - 3.4000 1.00 2698 154 0.1560 0.1923 REMARK 3 4 3.4000 - 3.0900 1.00 2684 162 0.1719 0.2021 REMARK 3 5 3.0900 - 2.8700 1.00 2668 146 0.1899 0.2115 REMARK 3 6 2.8700 - 2.7000 1.00 2680 144 0.1909 0.1957 REMARK 3 7 2.7000 - 2.5700 1.00 2687 124 0.1886 0.2624 REMARK 3 8 2.5700 - 2.4600 1.00 2652 128 0.1941 0.2502 REMARK 3 9 2.4600 - 2.3600 1.00 2632 159 0.1834 0.2671 REMARK 3 10 2.3600 - 2.2800 1.00 2678 123 0.1782 0.2198 REMARK 3 11 2.2800 - 2.2100 1.00 2666 135 0.1782 0.2266 REMARK 3 12 2.2100 - 2.1400 1.00 2671 143 0.1780 0.2317 REMARK 3 13 2.1400 - 2.0900 1.00 2611 141 0.1812 0.2316 REMARK 3 14 2.0900 - 2.0400 1.00 2630 129 0.1747 0.2032 REMARK 3 15 2.0400 - 1.9900 1.00 2624 168 0.1792 0.2092 REMARK 3 16 1.9900 - 1.9500 1.00 2620 145 0.2002 0.2307 REMARK 3 17 1.9500 - 1.9100 1.00 2644 134 0.2111 0.2524 REMARK 3 18 1.9100 - 1.8700 1.00 2568 129 0.2449 0.3132 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.193 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.398 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.09 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4691 REMARK 3 ANGLE : 0.834 6359 REMARK 3 CHIRALITY : 0.058 704 REMARK 3 PLANARITY : 0.005 823 REMARK 3 DIHEDRAL : 11.552 2861 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 40.9689 74.2317 26.1231 REMARK 3 T TENSOR REMARK 3 T11: 0.1818 T22: 0.1740 REMARK 3 T33: 0.2289 T12: -0.0090 REMARK 3 T13: 0.0231 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.3316 L22: 0.4867 REMARK 3 L33: 0.8654 L12: -0.0979 REMARK 3 L13: 0.2062 L23: 0.0328 REMARK 3 S TENSOR REMARK 3 S11: -0.0197 S12: -0.0240 S13: 0.0039 REMARK 3 S21: 0.0304 S22: 0.0384 S23: -0.0346 REMARK 3 S31: -0.0044 S32: -0.0382 S33: -0.0116 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6UZR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1000245503. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92013 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS, POINTLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50584 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 46.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.11600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.94400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: PDB ENTRY 4NF8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, PH 7.0, 75 MM SODIUM REMARK 280 CHLORIDE, 18% PEG2000 MME, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.18350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.74150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.35850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.74150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.18350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.35850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 MET A 2 REMARK 465 ASN A 99 REMARK 465 ASN A 100 REMARK 465 ASP A 291 REMARK 465 SER A 292 REMARK 465 HIS B 285 REMARK 465 ASN B 286 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 97 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 286 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 289 CG CD OE1 OE2 REMARK 470 CYS A 290 SG REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 SER A 3 N CB OG REMARK 480 THR A 4 OG1 CG2 REMARK 480 LYS A 29 CD CE NZ REMARK 480 GLU A 30 CG CD OE1 OE2 REMARK 480 ASN A 35 CG REMARK 480 ASN A 48 CB CG OD1 ND2 REMARK 480 HIS A 57 ND1 CE1 NE2 REMARK 480 LYS A 73 NZ REMARK 480 ARG A 76 NE CZ NH1 NH2 REMARK 480 ASN A 79 OD1 REMARK 480 GLU A 96 CD REMARK 480 ASN A 102 OD1 REMARK 480 LYS A 103 CG CD CE NZ REMARK 480 LYS A 104 CE NZ REMARK 480 GLU A 105 CG OE1 REMARK 480 LYS A 152 NZ REMARK 480 ARG A 155 CB CG CD NE CZ NH1 NH2 REMARK 480 ASP A 169 OD2 REMARK 480 LYS A 170 CG CD CE NZ REMARK 480 ARG A 186 CZ NH1 REMARK 480 GLU A 190 CG REMARK 480 THR A 241 CG2 REMARK 480 GLU A 243 OE2 REMARK 480 ARG A 247 CZ NH2 REMARK 480 GLN A 262 CD OE1 REMARK 480 LYS A 282 CD CE NZ REMARK 480 ASP B 6 CG OD1 OD2 REMARK 480 ASP B 26 CG OD1 OD2 REMARK 480 LEU B 28 CG CD1 CD2 REMARK 480 GLU B 30 CG CD OE1 OE2 REMARK 480 VAL B 33 CB CG1 CG2 REMARK 480 ARG B 34 CD NE CZ NH1 NH2 REMARK 480 LYS B 41 NZ REMARK 480 LYS B 44 CD CE NZ REMARK 480 GLU B 51 CG REMARK 480 LYS B 56 NZ REMARK 480 ARG B 72 CG CD NE CZ NH1 NH2 REMARK 480 LYS B 75 CE NZ REMARK 480 ASP B 79 OD2 REMARK 480 GLN B 145 CB CG CD OE1 NE2 REMARK 480 LYS B 152 CG CD CE NZ REMARK 480 LYS B 153 NZ REMARK 480 SER B 161 OG REMARK 480 ARG B 195 NE CZ NH1 NH2 REMARK 480 LYS B 208 CD CE NZ REMARK 480 ARG B 225 CZ NH1 NH2 REMARK 480 GLU B 227 CG CD OE1 OE2 REMARK 480 LYS B 230 CE NZ REMARK 480 ILE B 234 CD1 REMARK 480 SER B 236 CA CB OG REMARK 480 GLY B 237 CA REMARK 480 LYS B 256 NZ REMARK 480 GLU B 273 CG CD OE1 OE2 REMARK 480 GLU B 274 CD OE1 OE2 REMARK 480 THR B 277 OG1 REMARK 480 THR B 281 CG2 REMARK 480 ILE B 283 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 256 O HOH B 401 1.96 REMARK 500 NZ LYS B 69 OE1 GLU B 271 1.99 REMARK 500 O HOH A 1180 O HOH A 1192 2.07 REMARK 500 O HOH B 533 O HOH B 563 2.07 REMARK 500 OH TYR B 105 O HOH B 402 2.07 REMARK 500 OE1 GLU A 243 O HOH A 1001 2.08 REMARK 500 O HOH B 539 O HOH B 577 2.08 REMARK 500 OD2 ASP A 69 O2 GOL A 903 2.15 REMARK 500 NZ LYS A 256 O HOH A 1002 2.17 REMARK 500 OD1 ASP A 169 O HOH A 1003 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU B 51 NH1 ARG B 156 4465 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 13 87.17 -171.15 REMARK 500 GLN A 144 -152.68 -158.32 REMARK 500 GLU A 243 -173.31 55.31 REMARK 500 GLN A 288 -75.79 -107.23 REMARK 500 GLU A 289 125.39 67.09 REMARK 500 GLU B 16 101.02 -164.34 REMARK 500 ARG B 34 -138.40 63.59 REMARK 500 LYS B 75 66.46 70.69 REMARK 500 LYS B 87 -108.34 -127.42 REMARK 500 ASN B 97 -169.83 -108.74 REMARK 500 ASN B 171 11.79 80.46 REMARK 500 THR B 243 -153.03 -156.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QM1 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 302 DBREF 6UZR A 2 152 UNP P35439 NMDZ1_RAT 415 565 DBREF 6UZR A 155 292 UNP P35439 NMDZ1_RAT 684 821 DBREF 6UZR B 5 142 UNP Q00959 NMDE1_RAT 402 539 DBREF 6UZR B 145 286 UNP Q00959 NMDE1_RAT 661 802 SEQADV 6UZR GLY A 1 UNP P35439 EXPRESSION TAG SEQADV 6UZR GLY A 153 UNP P35439 LINKER SEQADV 6UZR THR A 154 UNP P35439 LINKER SEQADV 6UZR GLY B 143 UNP Q00959 LINKER SEQADV 6UZR THR B 144 UNP Q00959 LINKER SEQADV 6UZR THR B 242 UNP Q00959 SER 758 CONFLICT SEQRES 1 A 292 GLY MET SER THR ARG LEU LYS ILE VAL THR ILE HIS GLN SEQRES 2 A 292 GLU PRO PHE VAL TYR VAL LYS PRO THR MET SER ASP GLY SEQRES 3 A 292 THR CYS LYS GLU GLU PHE THR VAL ASN GLY ASP PRO VAL SEQRES 4 A 292 LYS LYS VAL ILE CYS THR GLY PRO ASN ASP THR SER PRO SEQRES 5 A 292 GLY SER PRO ARG HIS THR VAL PRO GLN CYS CYS TYR GLY SEQRES 6 A 292 PHE CYS ILE ASP LEU LEU ILE LYS LEU ALA ARG THR MET SEQRES 7 A 292 ASN PHE THR TYR GLU VAL HIS LEU VAL ALA ASP GLY LYS SEQRES 8 A 292 PHE GLY THR GLN GLU ARG VAL ASN ASN SER ASN LYS LYS SEQRES 9 A 292 GLU TRP ASN GLY MET MET GLY GLU LEU LEU SER GLY GLN SEQRES 10 A 292 ALA ASP MET ILE VAL ALA PRO LEU THR ILE ASN ASN GLU SEQRES 11 A 292 ARG ALA GLN TYR ILE GLU PHE SER LYS PRO PHE LYS TYR SEQRES 12 A 292 GLN GLY LEU THR ILE LEU VAL LYS LYS GLY THR ARG ILE SEQRES 13 A 292 THR GLY ILE ASN ASP PRO ARG LEU ARG ASN PRO SER ASP SEQRES 14 A 292 LYS PHE ILE TYR ALA THR VAL LYS GLN SER SER VAL ASP SEQRES 15 A 292 ILE TYR PHE ARG ARG GLN VAL GLU LEU SER THR MET TYR SEQRES 16 A 292 ARG HIS MET GLU LYS HIS ASN TYR GLU SER ALA ALA GLU SEQRES 17 A 292 ALA ILE GLN ALA VAL ARG ASP ASN LYS LEU HIS ALA PHE SEQRES 18 A 292 ILE TRP ASP SER ALA VAL LEU GLU PHE GLU ALA SER GLN SEQRES 19 A 292 LYS CYS ASP LEU VAL THR THR GLY GLU LEU PHE PHE ARG SEQRES 20 A 292 SER GLY PHE GLY ILE GLY MET ARG LYS ASP SER PRO TRP SEQRES 21 A 292 LYS GLN ASN VAL SER LEU SER ILE LEU LYS SER HIS GLU SEQRES 22 A 292 ASN GLY PHE MET GLU ASP LEU ASP LYS THR TRP VAL ARG SEQRES 23 A 292 TYR GLN GLU CYS ASP SER SEQRES 1 B 282 ASP ASP ASN HIS LEU SER ILE VAL THR LEU GLU GLU ALA SEQRES 2 B 282 PRO PHE VAL ILE VAL GLU ASP ILE ASP PRO LEU THR GLU SEQRES 3 B 282 THR CYS VAL ARG ASN THR VAL PRO CYS ARG LYS PHE VAL SEQRES 4 B 282 LYS ILE ASN ASN SER THR ASN GLU GLY MET ASN VAL LYS SEQRES 5 B 282 LYS CYS CYS LYS GLY PHE CYS ILE ASP ILE LEU LYS LYS SEQRES 6 B 282 LEU SER ARG THR VAL LYS PHE THR TYR ASP LEU TYR LEU SEQRES 7 B 282 VAL THR ASN GLY LYS HIS GLY LYS LYS VAL ASN ASN VAL SEQRES 8 B 282 TRP ASN GLY MET ILE GLY GLU VAL VAL TYR GLN ARG ALA SEQRES 9 B 282 VAL MET ALA VAL GLY SER LEU THR ILE ASN GLU GLU ARG SEQRES 10 B 282 SER GLU VAL VAL ASP PHE SER VAL PRO PHE VAL GLU THR SEQRES 11 B 282 GLY ILE SER VAL MET VAL SER ARG GLY THR GLN VAL THR SEQRES 12 B 282 GLY LEU SER ASP LYS LYS PHE GLN ARG PRO HIS ASP TYR SEQRES 13 B 282 SER PRO PRO PHE ARG PHE GLY THR VAL PRO ASN GLY SER SEQRES 14 B 282 THR GLU ARG ASN ILE ARG ASN ASN TYR PRO TYR MET HIS SEQRES 15 B 282 GLN TYR MET THR ARG PHE ASN GLN ARG GLY VAL GLU ASP SEQRES 16 B 282 ALA LEU VAL SER LEU LYS THR GLY LYS LEU ASP ALA PHE SEQRES 17 B 282 ILE TYR ASP ALA ALA VAL LEU ASN TYR LYS ALA GLY ARG SEQRES 18 B 282 ASP GLU GLY CYS LYS LEU VAL THR ILE GLY SER GLY TYR SEQRES 19 B 282 ILE PHE ALA THR THR GLY TYR GLY ILE ALA LEU GLN LYS SEQRES 20 B 282 GLY SER PRO TRP LYS ARG GLN ILE ASP LEU ALA LEU LEU SEQRES 21 B 282 GLN PHE VAL GLY ASP GLY GLU MET GLU GLU LEU GLU THR SEQRES 22 B 282 LEU TRP LEU THR GLY ILE CYS HIS ASN HET GLY A 901 5 HET GOL A 902 13 HET GOL A 903 14 HET QM1 B 301 13 HET GOL B 302 13 HETNAM GLY GLYCINE HETNAM GOL GLYCEROL HETNAM QM1 3-(CARBOXYMETHYL)PYRIDINE-2-CARBOXYLIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GLY C2 H5 N O2 FORMUL 4 GOL 3(C3 H8 O3) FORMUL 6 QM1 C8 H7 N O4 FORMUL 8 HOH *405(H2 O) HELIX 1 AA1 GLY A 65 ASN A 79 1 15 HELIX 2 AA2 ASN A 107 SER A 115 1 9 HELIX 3 AA3 ASN A 128 GLN A 133 1 6 HELIX 4 AA4 ASP A 161 ASN A 166 1 6 HELIX 5 AA5 SER A 179 GLN A 188 1 10 HELIX 6 AA6 LEU A 191 LYS A 200 1 10 HELIX 7 AA7 SER A 205 ASP A 215 1 11 HELIX 8 AA8 SER A 225 LYS A 235 1 11 HELIX 9 AA9 TRP A 260 ASN A 274 1 15 HELIX 10 AB1 GLY A 275 VAL A 285 1 11 HELIX 11 AB2 GLY B 61 LYS B 75 1 15 HELIX 12 AB3 ASN B 97 TYR B 105 1 9 HELIX 13 AB4 ASN B 118 GLU B 123 1 6 HELIX 14 AB5 ASP B 151 ARG B 156 1 6 HELIX 15 AB6 PRO B 157 TYR B 160 5 4 HELIX 16 AB7 GLY B 172 TYR B 182 1 11 HELIX 17 AB8 TYR B 182 THR B 190 1 9 HELIX 18 AB9 ARG B 191 ASN B 193 5 3 HELIX 19 AC1 GLY B 196 THR B 206 1 11 HELIX 20 AC2 ALA B 216 ARG B 225 1 10 HELIX 21 AC3 TRP B 255 ASP B 269 1 15 HELIX 22 AC4 GLY B 270 LEU B 280 1 11 SHEET 1 AA1 8 TYR A 18 PRO A 21 0 SHEET 2 AA1 8 THR A 58 TYR A 64 -1 O TYR A 64 N TYR A 18 SHEET 3 AA1 8 VAL A 42 PRO A 47 -1 N CYS A 44 O GLN A 61 SHEET 4 AA1 8 TYR A 82 LEU A 86 1 O LEU A 86 N THR A 45 SHEET 5 AA1 8 LEU A 6 THR A 10 1 N ILE A 8 O GLU A 83 SHEET 6 AA1 8 MET A 120 ILE A 121 1 O MET A 120 N VAL A 9 SHEET 7 AA1 8 GLY A 253 MET A 254 -1 O GLY A 253 N ILE A 121 SHEET 8 AA1 8 GLU A 136 PHE A 137 -1 N GLU A 136 O MET A 254 SHEET 1 AA2 2 GLN A 95 ARG A 97 0 SHEET 2 AA2 2 LYS A 104 TRP A 106 -1 O GLU A 105 N GLU A 96 SHEET 1 AA3 4 TYR A 173 ALA A 174 0 SHEET 2 AA3 4 ALA A 220 ASP A 224 1 O ILE A 222 N ALA A 174 SHEET 3 AA3 4 LYS A 142 LYS A 151 -1 N LEU A 149 O PHE A 221 SHEET 4 AA3 4 LEU A 238 PHE A 250 -1 O SER A 248 N GLN A 144 SHEET 1 AA4 5 THR B 77 LEU B 82 0 SHEET 2 AA4 5 HIS B 8 THR B 13 1 N LEU B 9 O THR B 77 SHEET 3 AA4 5 MET B 110 ALA B 111 1 O MET B 110 N VAL B 12 SHEET 4 AA4 5 ALA B 248 GLN B 250 -1 O ALA B 248 N ALA B 111 SHEET 5 AA4 5 VAL B 125 PHE B 127 -1 N ASP B 126 O LEU B 249 SHEET 1 AA5 3 ILE B 21 ASP B 24 0 SHEET 2 AA5 3 GLY B 52 LYS B 60 -1 O LYS B 60 N ILE B 21 SHEET 3 AA5 3 VAL B 37 LYS B 44 -1 N CYS B 39 O LYS B 57 SHEET 1 AA6 2 LYS B 91 VAL B 92 0 SHEET 2 AA6 2 VAL B 95 TRP B 96 -1 O VAL B 95 N VAL B 92 SHEET 1 AA7 4 PHE B 166 GLY B 167 0 SHEET 2 AA7 4 ALA B 211 ASP B 215 1 O ILE B 213 N GLY B 167 SHEET 3 AA7 4 VAL B 132 SER B 141 -1 N MET B 139 O PHE B 212 SHEET 4 AA7 4 LEU B 231 THR B 233 -1 O VAL B 232 N VAL B 140 SHEET 1 AA8 4 PHE B 166 GLY B 167 0 SHEET 2 AA8 4 ALA B 211 ASP B 215 1 O ILE B 213 N GLY B 167 SHEET 3 AA8 4 VAL B 132 SER B 141 -1 N MET B 139 O PHE B 212 SHEET 4 AA8 4 PHE B 240 TYR B 245 -1 O PHE B 240 N ILE B 136 SSBOND 1 CYS A 28 CYS A 62 1555 1555 2.03 SSBOND 2 CYS A 44 CYS A 63 1555 1555 2.05 SSBOND 3 CYS B 32 CYS B 58 1555 1555 2.04 SSBOND 4 CYS B 39 CYS B 59 1555 1555 2.06 SSBOND 5 CYS B 229 CYS B 284 1555 1555 2.05 CISPEP 1 GLU A 14 PRO A 15 0 2.72 CISPEP 2 ALA B 17 PRO B 18 0 2.10 CISPEP 3 LEU B 28 THR B 29 0 9.06 CISPEP 4 SER B 161 PRO B 162 0 -4.16 SITE 1 AC1 8 PHE A 92 PRO A 124 LEU A 125 THR A 126 SITE 2 AC1 8 ARG A 131 SER A 179 SER A 180 ASP A 224 SITE 1 AC2 7 THR A 33 VAL A 34 THR A 283 TRP A 284 SITE 2 AC2 7 TYR A 287 HOH A1025 HOH A1039 SITE 1 AC3 5 ASP A 37 PRO A 38 LYS A 40 ASP A 69 SITE 2 AC3 5 HOH A1059 SITE 1 AC4 13 GLU B 16 HIS B 88 SER B 114 THR B 116 SITE 2 AC4 13 ARG B 121 GLY B 172 SER B 173 THR B 174 SITE 3 AC4 13 TYR B 214 ASP B 215 TYR B 245 HOH B 420 SITE 4 AC4 13 HOH B 428 SITE 1 AC5 8 HIS A 272 MET A 277 GLU A 278 TYR B 238 SITE 2 AC5 8 ILE B 239 PHE B 240 ALA B 241 THR B 242 CRYST1 54.367 88.717 125.483 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018394 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011272 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007969 0.00000