HEADER SUGAR BINDING PROTEIN 18-NOV-19 6V02 TITLE N-TERMINAL 5 DOMAINS OF CI-MPR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATION-INDEPENDENT MANNOSE-6-PHOSPHATE RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: M6PR,300 KDA MANNOSE 6-PHOSPHATE RECEPTOR,MPR 300,INSULIN- COMPND 5 LIKE GROWTH FACTOR 2 RECEPTOR,INSULIN-LIKE GROWTH FACTOR II RECEPTOR, COMPND 6 IGF-II RECEPTOR,M6P/IGF2 RECEPTOR,M6P/IGF2R; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IGF2R, MPRI; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS LECTIN, RECEPTOR, PROTEIN TRANSPORT, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.J.OLSON,N.M.DAHMS,J.-J.P.KIM REVDAT 3 16-OCT-24 6V02 1 REMARK REVDAT 2 11-OCT-23 6V02 1 REMARK REVDAT 1 30-SEP-20 6V02 0 JRNL AUTH L.J.OLSON,S.K.MISRA,M.ISHIHARA,K.P.BATTAILE,O.C.GRANT, JRNL AUTH 2 A.SOOD,R.J.WOODS,J.P.KIM,M.TIEMEYER,G.REN,J.S.SHARP, JRNL AUTH 3 N.M.DAHMS JRNL TITL ALLOSTERIC REGULATION OF LYSOSOMAL ENZYME RECOGNITION BY THE JRNL TITL 2 CATION-INDEPENDENT MANNOSE 6-PHOSPHATE RECEPTOR. JRNL REF COMMUN BIOL V. 3 498 2020 JRNL REFN ESSN 2399-3642 JRNL PMID 32908216 JRNL DOI 10.1038/S42003-020-01211-W REMARK 2 REMARK 2 RESOLUTION. 2.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 66.1 REMARK 3 NUMBER OF REFLECTIONS : 18604 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.308 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 996 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.46 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.53 REMARK 3 REFLECTION IN BIN (WORKING SET) : 66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 3.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.3890 REMARK 3 BIN FREE R VALUE SET COUNT : 1 REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4482 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 74 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 62.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 76.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.41000 REMARK 3 B22 (A**2) : -2.43000 REMARK 3 B33 (A**2) : 2.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.71000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 2.595 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.439 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.406 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 43.069 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.917 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.853 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4604 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4113 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6243 ; 1.215 ; 1.886 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9565 ; 0.949 ; 2.934 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 561 ; 7.664 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 208 ;36.564 ;23.942 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 754 ;17.151 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;15.844 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 692 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5078 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 951 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2280 ; 1.168 ; 4.457 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2279 ; 1.168 ; 4.457 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2829 ; 2.145 ; 6.676 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2830 ; 2.145 ; 6.676 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2324 ; 0.836 ; 4.533 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2325 ; 0.836 ; 4.536 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3415 ; 1.558 ; 6.760 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5151 ; 4.133 ;52.699 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5142 ; 4.114 ;52.672 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 727 REMARK 3 ORIGIN FOR THE GROUP (A): 17.5090 0.3810 31.3840 REMARK 3 T TENSOR REMARK 3 T11: 0.2308 T22: 0.1345 REMARK 3 T33: 0.0466 T12: -0.0440 REMARK 3 T13: -0.0839 T23: 0.0182 REMARK 3 L TENSOR REMARK 3 L11: 2.5371 L22: 0.9709 REMARK 3 L33: 3.5122 L12: 0.0887 REMARK 3 L13: 1.9859 L23: -0.0305 REMARK 3 S TENSOR REMARK 3 S11: 0.0176 S12: -0.1738 S13: -0.1210 REMARK 3 S21: 0.1443 S22: -0.0199 S23: -0.0268 REMARK 3 S31: 0.1012 S32: -0.1318 S33: 0.0023 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 6V02 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1000245543. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19610 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.460 REMARK 200 RESOLUTION RANGE LOW (A) : 122.432 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 58.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6P8I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 7.0, 30% JEFFAMINE ED REMARK 280 -2003, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.11000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 THR A 5 REMARK 465 GLN A 6 REMARK 465 ALA A 7 REMARK 465 GLN A 84 REMARK 465 GLN A 85 REMARK 465 GLY A 86 REMARK 465 THR A 87 REMARK 465 ARG A 285 REMARK 465 GLY A 297 REMARK 465 GLU A 298 REMARK 465 GLN A 299 REMARK 465 GLN A 300 REMARK 465 ASP A 301 REMARK 465 VAL A 302 REMARK 465 ALA A 310 REMARK 465 GLN A 311 REMARK 465 SER A 312 REMARK 465 GLY A 313 REMARK 465 GLY A 314 REMARK 465 SER A 315 REMARK 465 GLY A 332 REMARK 465 GLU A 333 REMARK 465 THR A 334 REMARK 465 GLU A 335 REMARK 465 ILE A 336 REMARK 465 GLN A 337 REMARK 465 PHE A 338 REMARK 465 CYS A 339 REMARK 465 ASN A 340 REMARK 465 SER A 352 REMARK 465 ASP A 353 REMARK 465 GLY A 404 REMARK 465 ASN A 405 REMARK 465 ASP A 406 REMARK 465 LYS A 433 REMARK 465 GLU A 434 REMARK 465 LYS A 435 REMARK 465 GLU A 436 REMARK 465 HIS A 457 REMARK 465 ALA A 458 REMARK 465 GLU A 459 REMARK 465 PRO A 460 REMARK 465 GLU A 461 REMARK 465 GLN A 462 REMARK 465 ASN A 463 REMARK 465 TRP A 464 REMARK 465 GLU A 465 REMARK 465 ALA A 466 REMARK 465 VAL A 467 REMARK 465 ASP A 468 REMARK 465 GLY A 469 REMARK 465 SER A 470 REMARK 465 GLN A 471 REMARK 465 THR A 472 REMARK 465 GLU A 473 REMARK 465 THR A 474 REMARK 465 GLU A 475 REMARK 465 LYS A 476 REMARK 465 LYS A 477 REMARK 465 HIS A 478 REMARK 465 PHE A 479 REMARK 465 PHE A 480 REMARK 465 ILE A 481 REMARK 465 ASN A 482 REMARK 465 ILE A 483 REMARK 465 CYS A 484 REMARK 465 HIS A 485 REMARK 465 ARG A 486 REMARK 465 VAL A 487 REMARK 465 LEU A 488 REMARK 465 GLN A 489 REMARK 465 GLU A 490 REMARK 465 GLY A 491 REMARK 465 LYS A 492 REMARK 465 ALA A 493 REMARK 465 ARG A 494 REMARK 465 GLY A 495 REMARK 465 CYS A 496 REMARK 465 PRO A 497 REMARK 465 GLU A 498 REMARK 465 ASP A 499 REMARK 465 ALA A 500 REMARK 465 ALA A 501 REMARK 465 VAL A 502 REMARK 465 CYS A 503 REMARK 465 ALA A 504 REMARK 465 VAL A 505 REMARK 465 ASP A 506 REMARK 465 LYS A 507 REMARK 465 ASN A 508 REMARK 465 GLY A 509 REMARK 465 SER A 510 REMARK 465 LYS A 511 REMARK 465 ASN A 512 REMARK 465 LEU A 513 REMARK 465 GLY A 514 REMARK 465 LYS A 515 REMARK 465 PHE A 516 REMARK 465 ILE A 517 REMARK 465 SER A 518 REMARK 465 SER A 519 REMARK 465 PRO A 520 REMARK 465 MET A 521 REMARK 465 LYS A 522 REMARK 465 GLU A 523 REMARK 465 LYS A 524 REMARK 465 GLY A 525 REMARK 465 ASN A 526 REMARK 465 ILE A 527 REMARK 465 GLN A 528 REMARK 465 LEU A 529 REMARK 465 SER A 530 REMARK 465 TYR A 531 REMARK 465 SER A 532 REMARK 465 ASP A 533 REMARK 465 GLY A 534 REMARK 465 ASP A 535 REMARK 465 ASP A 536 REMARK 465 CYS A 537 REMARK 465 GLY A 538 REMARK 465 HIS A 539 REMARK 465 GLY A 540 REMARK 465 LYS A 541 REMARK 465 LYS A 542 REMARK 465 ILE A 543 REMARK 465 LYS A 544 REMARK 465 THR A 545 REMARK 465 ASN A 546 REMARK 465 ILE A 547 REMARK 465 GLU A 557 REMARK 465 SER A 558 REMARK 465 ALA A 559 REMARK 465 PRO A 560 REMARK 465 VAL A 561 REMARK 465 LEU A 562 REMARK 465 ARG A 563 REMARK 465 THR A 564 REMARK 465 SER A 565 REMARK 465 GLY A 566 REMARK 465 GLU A 567 REMARK 465 GLY A 568 REMARK 465 GLY A 569 REMARK 465 CYS A 570 REMARK 465 PHE A 571 REMARK 465 TYR A 572 REMARK 465 GLU A 573 REMARK 465 PHE A 574 REMARK 465 GLU A 575 REMARK 465 TYR A 680 REMARK 465 ASN A 681 REMARK 465 GLU A 728 REMARK 465 ALA A 729 REMARK 465 LEU A 730 REMARK 465 VAL A 731 REMARK 465 PRO A 732 REMARK 465 ARG A 733 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 10 76.06 52.63 REMARK 500 SER A 15 -5.33 69.74 REMARK 500 ASN A 26 56.35 70.99 REMARK 500 ASP A 38 58.49 -95.96 REMARK 500 HIS A 51 -68.64 -94.83 REMARK 500 ASP A 52 80.21 66.94 REMARK 500 LYS A 54 100.70 -54.70 REMARK 500 THR A 55 78.57 73.11 REMARK 500 VAL A 61 33.34 -99.22 REMARK 500 THR A 70 101.34 -164.77 REMARK 500 ARG A 71 -115.06 49.63 REMARK 500 THR A 79 56.85 -90.21 REMARK 500 CYS A 82 -97.78 -152.80 REMARK 500 LEU A 146 45.89 37.16 REMARK 500 LYS A 148 111.48 95.04 REMARK 500 CYS A 177 13.45 59.14 REMARK 500 ASP A 185 62.62 171.66 REMARK 500 GLN A 189 -28.88 77.01 REMARK 500 ARG A 214 -82.41 -137.90 REMARK 500 LYS A 222 -57.56 74.03 REMARK 500 ARG A 231 91.90 -161.36 REMARK 500 GLU A 233 86.09 -61.06 REMARK 500 LYS A 236 -98.72 65.12 REMARK 500 LEU A 237 40.47 36.33 REMARK 500 ASP A 241 45.02 32.53 REMARK 500 LYS A 268 24.96 -157.78 REMARK 500 ARG A 272 79.57 -112.65 REMARK 500 LYS A 322 -95.61 -57.02 REMARK 500 VAL A 330 -80.49 -29.95 REMARK 500 LYS A 342 -58.61 -14.34 REMARK 500 GLN A 343 -96.41 -76.20 REMARK 500 ALA A 344 116.57 65.60 REMARK 500 SER A 355 44.51 -75.78 REMARK 500 ARG A 362 -116.51 -78.70 REMARK 500 TYR A 363 -62.97 -171.76 REMARK 500 ASN A 365 93.25 -65.32 REMARK 500 ASP A 418 57.64 36.66 REMARK 500 CYS A 440 76.63 -104.03 REMARK 500 ALA A 442 -169.74 -116.78 REMARK 500 LYS A 446 -13.35 76.87 REMARK 500 SER A 452 -52.18 -160.03 REMARK 500 LEU A 454 57.51 -100.99 REMARK 500 PRO A 553 85.78 -57.95 REMARK 500 ALA A 579 -37.95 -37.17 REMARK 500 VAL A 583 138.16 -30.25 REMARK 500 LYS A 621 -50.07 163.18 REMARK 500 CYS A 629 -47.85 65.60 REMARK 500 SER A 633 63.71 -159.84 REMARK 500 PRO A 639 3.09 -63.41 REMARK 500 ASP A 650 -61.01 -98.85 REMARK 500 REMARK 500 THIS ENTRY HAS 59 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 974 DISTANCE = 6.00 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6P8I RELATED DB: PDB REMARK 900 6P8I CONTAINS THE SAME PROTEIN CRYSTALLIZED AT PH 5.5 DBREF 6V02 A 8 728 UNP P11717 MPRI_HUMAN 43 763 SEQADV 6V02 GLY A 3 UNP P11717 EXPRESSION TAG SEQADV 6V02 SER A 4 UNP P11717 EXPRESSION TAG SEQADV 6V02 THR A 5 UNP P11717 EXPRESSION TAG SEQADV 6V02 GLN A 6 UNP P11717 EXPRESSION TAG SEQADV 6V02 ALA A 7 UNP P11717 EXPRESSION TAG SEQADV 6V02 ALA A 729 UNP P11717 EXPRESSION TAG SEQADV 6V02 LEU A 730 UNP P11717 EXPRESSION TAG SEQADV 6V02 VAL A 731 UNP P11717 EXPRESSION TAG SEQADV 6V02 PRO A 732 UNP P11717 EXPRESSION TAG SEQADV 6V02 ARG A 733 UNP P11717 EXPRESSION TAG SEQRES 1 A 731 GLY SER THR GLN ALA ALA PRO PHE PRO GLU LEU CYS SER SEQRES 2 A 731 TYR THR TRP GLU ALA VAL ASP THR LYS ASN ASN VAL LEU SEQRES 3 A 731 TYR LYS ILE ASN ILE CYS GLY SER VAL ASP ILE VAL GLN SEQRES 4 A 731 CYS GLY PRO SER SER ALA VAL CYS MET HIS ASP LEU LYS SEQRES 5 A 731 THR ARG THR TYR HIS SER VAL GLY ASP SER VAL LEU ARG SEQRES 6 A 731 SER ALA THR ARG SER LEU LEU GLU PHE ASN THR THR VAL SEQRES 7 A 731 SER CYS ASP GLN GLN GLY THR ASN HIS ARG VAL GLN SER SEQRES 8 A 731 SER ILE ALA PHE LEU CYS GLY LYS THR LEU GLY THR PRO SEQRES 9 A 731 GLU PHE VAL THR ALA THR GLU CYS VAL HIS TYR PHE GLU SEQRES 10 A 731 TRP ARG THR THR ALA ALA CYS LYS LYS ASP ILE PHE LYS SEQRES 11 A 731 ALA ASN LYS GLU VAL PRO CYS TYR VAL PHE ASP GLU GLU SEQRES 12 A 731 LEU ARG LYS HIS ASP LEU ASN PRO LEU ILE LYS LEU SER SEQRES 13 A 731 GLY ALA TYR LEU VAL ASP ASP SER ASP PRO ASP THR SER SEQRES 14 A 731 LEU PHE ILE ASN VAL CYS ARG ASP ILE ASP THR LEU ARG SEQRES 15 A 731 ASP PRO GLY SER GLN LEU ARG ALA CYS PRO PRO GLY THR SEQRES 16 A 731 ALA ALA CYS LEU VAL ARG GLY HIS GLN ALA PHE ASP VAL SEQRES 17 A 731 GLY GLN PRO ARG ASP GLY LEU LYS LEU VAL ARG LYS ASP SEQRES 18 A 731 ARG LEU VAL LEU SER TYR VAL ARG GLU GLU ALA GLY LYS SEQRES 19 A 731 LEU ASP PHE CYS ASP GLY HIS SER PRO ALA VAL THR ILE SEQRES 20 A 731 THR PHE VAL CYS PRO SER GLU ARG ARG GLU GLY THR ILE SEQRES 21 A 731 PRO LYS LEU THR ALA LYS SER ASN CYS ARG TYR GLU ILE SEQRES 22 A 731 GLU TRP ILE THR GLU TYR ALA CYS HIS ARG ASP TYR LEU SEQRES 23 A 731 GLU SER LYS THR CYS SER LEU SER GLY GLU GLN GLN ASP SEQRES 24 A 731 VAL SER ILE ASP LEU THR PRO LEU ALA GLN SER GLY GLY SEQRES 25 A 731 SER SER TYR ILE SER ASP GLY LYS GLU TYR LEU PHE TYR SEQRES 26 A 731 LEU ASN VAL CYS GLY GLU THR GLU ILE GLN PHE CYS ASN SEQRES 27 A 731 LYS LYS GLN ALA ALA VAL CYS GLN VAL LYS LYS SER ASP SEQRES 28 A 731 THR SER GLN VAL LYS ALA ALA GLY ARG TYR HIS ASN GLN SEQRES 29 A 731 THR LEU ARG TYR SER ASP GLY ASP LEU THR LEU ILE TYR SEQRES 30 A 731 PHE GLY GLY ASP GLU CYS SER SER GLY PHE GLN ARG MET SEQRES 31 A 731 SER VAL ILE ASN PHE GLU CYS ASN LYS THR ALA GLY ASN SEQRES 32 A 731 ASP GLY LYS GLY THR PRO VAL PHE THR GLY GLU VAL ASP SEQRES 33 A 731 CYS THR TYR PHE PHE THR TRP ASP THR GLU TYR ALA CYS SEQRES 34 A 731 VAL LYS GLU LYS GLU ASP LEU LEU CYS GLY ALA THR ASP SEQRES 35 A 731 GLY LYS LYS ARG TYR ASP LEU SER ALA LEU VAL ARG HIS SEQRES 36 A 731 ALA GLU PRO GLU GLN ASN TRP GLU ALA VAL ASP GLY SER SEQRES 37 A 731 GLN THR GLU THR GLU LYS LYS HIS PHE PHE ILE ASN ILE SEQRES 38 A 731 CYS HIS ARG VAL LEU GLN GLU GLY LYS ALA ARG GLY CYS SEQRES 39 A 731 PRO GLU ASP ALA ALA VAL CYS ALA VAL ASP LYS ASN GLY SEQRES 40 A 731 SER LYS ASN LEU GLY LYS PHE ILE SER SER PRO MET LYS SEQRES 41 A 731 GLU LYS GLY ASN ILE GLN LEU SER TYR SER ASP GLY ASP SEQRES 42 A 731 ASP CYS GLY HIS GLY LYS LYS ILE LYS THR ASN ILE THR SEQRES 43 A 731 LEU VAL CYS LYS PRO GLY ASP LEU GLU SER ALA PRO VAL SEQRES 44 A 731 LEU ARG THR SER GLY GLU GLY GLY CYS PHE TYR GLU PHE SEQRES 45 A 731 GLU TRP HIS THR ALA ALA ALA CYS VAL LEU SER LYS THR SEQRES 46 A 731 GLU GLY GLU ASN CYS THR VAL PHE ASP SER GLN ALA GLY SEQRES 47 A 731 PHE SER PHE ASP LEU SER PRO LEU THR LYS LYS ASN GLY SEQRES 48 A 731 ALA TYR LYS VAL GLU THR LYS LYS TYR ASP PHE TYR ILE SEQRES 49 A 731 ASN VAL CYS GLY PRO VAL SER VAL SER PRO CYS GLN PRO SEQRES 50 A 731 ASP SER GLY ALA CYS GLN VAL ALA LYS SER ASP GLU LYS SEQRES 51 A 731 THR TRP ASN LEU GLY LEU SER ASN ALA LYS LEU SER TYR SEQRES 52 A 731 TYR ASP GLY MET ILE GLN LEU ASN TYR ARG GLY GLY THR SEQRES 53 A 731 PRO TYR ASN ASN GLU ARG HIS THR PRO ARG ALA THR LEU SEQRES 54 A 731 ILE THR PHE LEU CYS ASP ARG ASP ALA GLY VAL GLY PHE SEQRES 55 A 731 PRO GLU TYR GLN GLU GLU ASP ASN SER THR TYR ASN PHE SEQRES 56 A 731 ARG TRP TYR THR SER TYR ALA CYS PRO GLU GLU ALA LEU SEQRES 57 A 731 VAL PRO ARG HET NAG A 801 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG C8 H15 N O6 FORMUL 3 HOH *74(H2 O) HELIX 1 AA1 PHE A 10 CYS A 14 5 5 HELIX 2 AA2 THR A 123 CYS A 126 5 4 HELIX 3 AA3 ASN A 152 ILE A 155 5 4 HELIX 4 AA4 LYS A 268 ASN A 270 5 3 HELIX 5 AA5 GLU A 280 CYS A 283 5 4 HELIX 6 AA6 TYR A 429 CYS A 431 5 3 HELIX 7 AA7 SER A 606 THR A 609 5 4 HELIX 8 AA8 SER A 722 CYS A 725 5 4 SHEET 1 AA1 4 TRP A 18 ASP A 22 0 SHEET 2 AA1 4 VAL A 27 ILE A 31 -1 O TYR A 29 N ALA A 20 SHEET 3 AA1 4 SER A 46 MET A 50 -1 O CYS A 49 N LYS A 30 SHEET 4 AA1 4 HIS A 59 ASP A 63 -1 O HIS A 59 N MET A 50 SHEET 1 AA2 5 ARG A 67 THR A 70 0 SHEET 2 AA2 5 LEU A 73 ASN A 77 -1 O GLU A 75 N SER A 68 SHEET 3 AA2 5 GLN A 92 CYS A 99 -1 O SER A 93 N PHE A 76 SHEET 4 AA2 5 VAL A 115 THR A 122 1 O THR A 122 N LEU A 98 SHEET 5 AA2 5 PRO A 106 ALA A 111 -1 N THR A 110 O TYR A 117 SHEET 1 AA3 2 TYR A 140 VAL A 141 0 SHEET 2 AA3 2 HIS A 149 ASP A 150 -1 O HIS A 149 N VAL A 141 SHEET 1 AA4 4 TYR A 161 VAL A 163 0 SHEET 2 AA4 4 SER A 171 ILE A 174 -1 O ILE A 174 N TYR A 161 SHEET 3 AA4 4 ALA A 199 VAL A 202 -1 O CYS A 200 N PHE A 173 SHEET 4 AA4 4 ALA A 207 GLY A 211 -1 O PHE A 208 N LEU A 201 SHEET 1 AA5 5 LYS A 218 VAL A 220 0 SHEET 2 AA5 5 ARG A 224 VAL A 230 -1 O ARG A 224 N VAL A 220 SHEET 3 AA5 5 ALA A 246 VAL A 252 -1 O VAL A 247 N TYR A 229 SHEET 4 AA5 5 ARG A 272 ILE A 278 1 O TRP A 277 N THR A 250 SHEET 5 AA5 5 LYS A 264 ALA A 267 -1 N THR A 266 O GLU A 274 SHEET 1 AA6 6 TYR A 287 SER A 290 0 SHEET 2 AA6 6 GLN A 366 SER A 371 -1 O LEU A 368 N SER A 290 SHEET 3 AA6 6 ASP A 374 TYR A 379 -1 O ASP A 374 N SER A 371 SHEET 4 AA6 6 MET A 392 CYS A 399 -1 O ILE A 395 N LEU A 377 SHEET 5 AA6 6 THR A 420 THR A 427 1 O PHE A 423 N ASN A 396 SHEET 6 AA6 6 GLY A 409 VAL A 417 -1 N GLY A 415 O PHE A 422 SHEET 1 AA7 3 TYR A 324 LEU A 328 0 SHEET 2 AA7 3 VAL A 346 LYS A 350 -1 O VAL A 349 N LEU A 325 SHEET 3 AA7 3 VAL A 357 ALA A 359 -1 O LYS A 358 N GLN A 348 SHEET 1 AA8 6 THR A 587 GLU A 588 0 SHEET 2 AA8 6 SER A 664 TYR A 666 -1 O TYR A 665 N THR A 587 SHEET 3 AA8 6 MET A 669 TYR A 674 -1 O GLN A 671 N SER A 664 SHEET 4 AA8 6 THR A 690 CYS A 696 -1 O PHE A 694 N ILE A 670 SHEET 5 AA8 6 ASN A 716 THR A 721 1 O THR A 721 N LEU A 695 SHEET 6 AA8 6 PRO A 705 GLN A 708 -1 N GLN A 708 O ASN A 716 SHEET 1 AA9 2 THR A 593 PHE A 595 0 SHEET 2 AA9 2 SER A 602 ASP A 604 -1 O PHE A 603 N VAL A 594 SHEET 1 AB1 4 TYR A 615 GLU A 618 0 SHEET 2 AB1 4 ASP A 623 ILE A 626 -1 O PHE A 624 N VAL A 617 SHEET 3 AB1 4 SER A 641 VAL A 646 -1 O CYS A 644 N TYR A 625 SHEET 4 AB1 4 THR A 653 LEU A 658 -1 O GLY A 657 N GLY A 642 SSBOND 1 CYS A 14 CYS A 34 1555 1555 2.03 SSBOND 2 CYS A 42 CYS A 49 1555 1555 2.03 SSBOND 3 CYS A 82 CYS A 114 1555 1555 2.04 SSBOND 4 CYS A 99 CYS A 126 1555 1555 2.05 SSBOND 5 CYS A 139 CYS A 177 1555 1555 2.03 SSBOND 6 CYS A 193 CYS A 200 1555 1555 2.04 SSBOND 7 CYS A 240 CYS A 271 1555 1555 2.03 SSBOND 8 CYS A 253 CYS A 283 1555 1555 2.04 SSBOND 9 CYS A 293 CYS A 331 1555 1555 2.04 SSBOND 10 CYS A 385 CYS A 419 1555 1555 2.05 SSBOND 11 CYS A 399 CYS A 431 1555 1555 2.04 SSBOND 12 CYS A 551 CYS A 582 1555 1555 2.03 SSBOND 13 CYS A 592 CYS A 629 1555 1555 2.04 SSBOND 14 CYS A 637 CYS A 644 1555 1555 2.03 SSBOND 15 CYS A 696 CYS A 725 1555 1555 2.05 LINK ND2 ASN A 400 C1 NAG A 801 1555 1555 1.45 CRYST1 50.780 66.220 124.530 90.00 100.53 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019693 0.000000 0.003662 0.00000 SCALE2 0.000000 0.015101 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008168 0.00000