data_6V0L # _entry.id 6V0L # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6V0L pdb_00006v0l 10.2210/pdb6v0l/pdb WWPDB D_1000245534 ? ? BMRB 30688 ? 10.13018/BMR30688 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-03-11 2 'Structure model' 1 1 2020-04-01 3 'Structure model' 1 2 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.title' 5 3 'Structure model' '_database_2.pdbx_DOI' 6 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6V0L _pdbx_database_status.recvd_initial_deposition_date 2019-11-18 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'dGMP Fill-in G-Quadruplex in the PDGFR-b Promoter' _pdbx_database_related.db_id 30688 _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wang, K.B.' 1 0000-0002-2934-9906 'Dickerhoff, J.' 2 0000-0002-3197-9472 'Wu, G.' 3 0000-0003-4659-8717 'Yang, D.' 4 0000-0001-7489-7111 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 142 _citation.language ? _citation.page_first 5204 _citation.page_last 5211 _citation.title ;PDGFR-beta Promoter Forms a Vacancy G-Quadruplex that Can Be Filled in by dGMP: Solution Structure and Molecular Recognition of Guanine Metabolites and Drugs. ; _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.9b12770 _citation.pdbx_database_id_PubMed 32101424 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wang, K.B.' 1 ? primary 'Dickerhoff, J.' 2 ? primary 'Wu, G.' 3 ? primary 'Yang, D.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*(3D1)P*AP*GP*GP*GP*AP*GP*GP*GP*CP*GP*GP*CP*GP*GP*GP*AP*CP*A)-3') ; 5929.906 1 ? ? ? ? 2 non-polymer syn "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" 347.221 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(3D1)(DA)(DG)(DG)(DG)(DA)(DG)(DG)(DG)(DC)(DG)(DG)(DC)(DG)(DG)(DG)(DA)(DC)(DA)' _entity_poly.pdbx_seq_one_letter_code_can XAGGGAGGGCGGCGGGACA _entity_poly.pdbx_strand_id X _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" _pdbx_entity_nonpoly.comp_id DGP # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 3D1 n 1 2 DA n 1 3 DG n 1 4 DG n 1 5 DG n 1 6 DA n 1 7 DG n 1 8 DG n 1 9 DG n 1 10 DC n 1 11 DG n 1 12 DG n 1 13 DC n 1 14 DG n 1 15 DG n 1 16 DG n 1 17 DA n 1 18 DC n 1 19 DA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 19 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name Human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3D1 non-polymer . '(2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol' "2'-DEOXYADENOSINE" 'C10 H13 N5 O3' 251.242 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DGP non-polymer n "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 3D1 1 1 1 3D1 DA5 X . n A 1 2 DA 2 2 2 DA DA X . n A 1 3 DG 3 3 3 DG DG X . n A 1 4 DG 4 4 4 DG DG X . n A 1 5 DG 5 5 5 DG DG X . n A 1 6 DA 6 6 6 DA DA X . n A 1 7 DG 7 7 7 DG DG X . n A 1 8 DG 8 8 8 DG DG X . n A 1 9 DG 9 9 9 DG DG X . n A 1 10 DC 10 10 10 DC DC X . n A 1 11 DG 11 11 11 DG DG X . n A 1 12 DG 12 12 12 DG DG X . n A 1 13 DC 13 13 13 DC DC X . n A 1 14 DG 14 14 14 DG DG X . n A 1 15 DG 15 15 15 DG DG X . n A 1 16 DG 16 16 16 DG DG X . n A 1 17 DA 17 17 17 DA DA X . n A 1 18 DC 18 18 18 DC DC X . n A 1 19 DA 19 19 19 DA DA3 X . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id DGP _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 20 _pdbx_nonpoly_scheme.pdb_mon_id DGP _pdbx_nonpoly_scheme.auth_mon_id DGP _pdbx_nonpoly_scheme.pdb_strand_id X _pdbx_nonpoly_scheme.pdb_ins_code . # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6V0L _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 6V0L _struct.title ;PDGFR-b Promoter Forms a G-Vacancy Quadruplex that Can be Complemented by dGMP: Molecular Structure and Recognition of Guanine Derivatives and Metabolites ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6V0L _struct_keywords.text 'G-quadruplex, PDGFR-b, Promoter, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6V0L _struct_ref.pdbx_db_accession 6V0L _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6V0L _struct_ref_seq.pdbx_strand_id X _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 19 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6V0L _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 19 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 19 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 830 ? 1 MORE 9 ? 1 'SSA (A^2)' 3720 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A 3D1 1 "O3'" ? ? ? 1_555 A DA 2 P ? ? X 3D1 1 X DA 2 1_555 ? ? ? ? ? ? ? 1.607 ? ? hydrog1 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DG 7 O6 ? ? X DG 3 X DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DG 7 N7 ? ? X DG 3 X DG 7 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 3 N7 ? ? ? 1_555 A DG 14 N2 ? ? X DG 3 X DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DG 14 N1 ? ? X DG 3 X DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DG 8 O6 ? ? X DG 4 X DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DG 8 N7 ? ? X DG 4 X DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 4 N7 ? ? ? 1_555 A DG 15 N2 ? ? X DG 4 X DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DG 15 N1 ? ? X DG 4 X DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DG 9 O6 ? ? X DG 5 X DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DG 9 N7 ? ? X DG 5 X DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 5 N7 ? ? ? 1_555 A DG 16 N2 ? ? X DG 5 X DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DG 16 N1 ? ? X DG 5 X DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DG 11 O6 ? ? X DG 8 X DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DG 11 N7 ? ? X DG 8 X DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DG 12 O6 ? ? X DG 9 X DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DG 12 N7 ? ? X DG 9 X DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 11 N1 ? ? ? 1_555 A DG 15 O6 ? ? X DG 11 X DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 11 N2 ? ? ? 1_555 A DG 15 N7 ? ? X DG 11 X DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 12 N1 ? ? ? 1_555 A DG 16 O6 ? ? X DG 12 X DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 12 N2 ? ? ? 1_555 A DG 16 N7 ? ? X DG 12 X DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DA 17 N3 ? ? ? 1_555 A DA 19 N6 ? ? X DA 17 X DA 19 1_555 ? ? ? ? ? ? 'DA-DA MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id X _struct_site.pdbx_auth_comp_id DGP _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'binding site for residue DGP X 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 3D1 A 1 ? 3D1 X 1 . ? 1_555 ? 2 AC1 5 DG A 7 ? DG X 7 . ? 1_555 ? 3 AC1 5 DG A 8 ? DG X 8 . ? 1_555 ? 4 AC1 5 DG A 11 ? DG X 11 . ? 1_555 ? 5 AC1 5 DG A 14 ? DG X 14 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C4 X DA 2 ? ? C5 X DA 2 ? ? C6 X DA 2 ? ? 113.44 117.00 -3.56 0.50 N 2 1 C5 X DA 2 ? ? C6 X DA 2 ? ? N1 X DA 2 ? ? 121.41 117.70 3.71 0.50 N 3 1 N1 X DA 2 ? ? C6 X DA 2 ? ? N6 X DA 2 ? ? 112.87 118.60 -5.73 0.60 N 4 1 "O4'" X DG 3 ? ? "C1'" X DG 3 ? ? N9 X DG 3 ? ? 110.41 108.30 2.11 0.30 N 5 1 "O4'" X DG 5 ? ? "C1'" X DG 5 ? ? N9 X DG 5 ? ? 110.58 108.30 2.28 0.30 N 6 1 C4 X DA 6 ? ? C5 X DA 6 ? ? C6 X DA 6 ? ? 113.81 117.00 -3.19 0.50 N 7 1 C5 X DA 6 ? ? C6 X DA 6 ? ? N1 X DA 6 ? ? 121.42 117.70 3.72 0.50 N 8 1 N1 X DA 6 ? ? C6 X DA 6 ? ? N6 X DA 6 ? ? 113.08 118.60 -5.52 0.60 N 9 1 "O4'" X DG 7 ? ? "C1'" X DG 7 ? ? N9 X DG 7 ? ? 111.08 108.30 2.78 0.30 N 10 1 "O4'" X DG 8 ? ? "C1'" X DG 8 ? ? N9 X DG 8 ? ? 113.54 108.30 5.24 0.30 N 11 1 "O4'" X DG 9 ? ? "C1'" X DG 9 ? ? N9 X DG 9 ? ? 112.37 108.30 4.07 0.30 N 12 1 "O4'" X DC 10 ? ? "C1'" X DC 10 ? ? N1 X DC 10 ? ? 110.14 108.30 1.84 0.30 N 13 1 N3 X DC 10 ? ? C2 X DC 10 ? ? O2 X DC 10 ? ? 117.29 121.90 -4.61 0.70 N 14 1 "O4'" X DG 11 ? ? "C1'" X DG 11 ? ? N9 X DG 11 ? ? 110.93 108.30 2.63 0.30 N 15 1 "O4'" X DC 13 ? ? "C1'" X DC 13 ? ? N1 X DC 13 ? ? 110.77 108.30 2.47 0.30 N 16 1 N3 X DC 13 ? ? C2 X DC 13 ? ? O2 X DC 13 ? ? 117.22 121.90 -4.68 0.70 N 17 1 "O4'" X DG 14 ? ? "C1'" X DG 14 ? ? N9 X DG 14 ? ? 111.05 108.30 2.75 0.30 N 18 1 "O4'" X DG 15 ? ? "C1'" X DG 15 ? ? N9 X DG 15 ? ? 112.46 108.30 4.16 0.30 N 19 1 "O4'" X DG 16 ? ? "C1'" X DG 16 ? ? N9 X DG 16 ? ? 111.64 108.30 3.34 0.30 N 20 1 "O4'" X DA 17 ? ? "C1'" X DA 17 ? ? N9 X DA 17 ? ? 112.54 108.30 4.24 0.30 N 21 1 C4 X DA 17 ? ? C5 X DA 17 ? ? C6 X DA 17 ? ? 113.63 117.00 -3.37 0.50 N 22 1 C5 X DA 17 ? ? C6 X DA 17 ? ? N1 X DA 17 ? ? 121.48 117.70 3.78 0.50 N 23 1 N1 X DA 17 ? ? C6 X DA 17 ? ? N6 X DA 17 ? ? 113.03 118.60 -5.57 0.60 N 24 1 "O4'" X DC 18 ? ? "C1'" X DC 18 ? ? N1 X DC 18 ? ? 113.17 108.30 4.87 0.30 N 25 1 N3 X DC 18 ? ? C2 X DC 18 ? ? O2 X DC 18 ? ? 117.46 121.90 -4.44 0.70 N 26 1 C4 X DA 19 ? ? C5 X DA 19 ? ? C6 X DA 19 ? ? 113.51 117.00 -3.49 0.50 N 27 1 C5 X DA 19 ? ? C6 X DA 19 ? ? N1 X DA 19 ? ? 121.61 117.70 3.91 0.50 N 28 1 N1 X DA 19 ? ? C6 X DA 19 ? ? N6 X DA 19 ? ? 112.33 118.60 -6.27 0.60 N 29 2 C4 X DA 2 ? ? C5 X DA 2 ? ? C6 X DA 2 ? ? 113.77 117.00 -3.23 0.50 N 30 2 C5 X DA 2 ? ? C6 X DA 2 ? ? N1 X DA 2 ? ? 121.33 117.70 3.63 0.50 N 31 2 N1 X DA 2 ? ? C6 X DA 2 ? ? N6 X DA 2 ? ? 113.02 118.60 -5.58 0.60 N 32 2 "O4'" X DG 3 ? ? "C1'" X DG 3 ? ? N9 X DG 3 ? ? 110.13 108.30 1.83 0.30 N 33 2 "O4'" X DG 5 ? ? "C1'" X DG 5 ? ? N9 X DG 5 ? ? 110.87 108.30 2.57 0.30 N 34 2 C4 X DA 6 ? ? C5 X DA 6 ? ? C6 X DA 6 ? ? 113.65 117.00 -3.35 0.50 N 35 2 C5 X DA 6 ? ? C6 X DA 6 ? ? N1 X DA 6 ? ? 121.52 117.70 3.82 0.50 N 36 2 N1 X DA 6 ? ? C6 X DA 6 ? ? N6 X DA 6 ? ? 112.88 118.60 -5.72 0.60 N 37 2 "O4'" X DG 7 ? ? "C1'" X DG 7 ? ? N9 X DG 7 ? ? 110.15 108.30 1.85 0.30 N 38 2 "O4'" X DG 9 ? ? "C1'" X DG 9 ? ? N9 X DG 9 ? ? 111.48 108.30 3.18 0.30 N 39 2 "O4'" X DC 10 ? ? "C1'" X DC 10 ? ? N1 X DC 10 ? ? 111.24 108.30 2.94 0.30 N 40 2 N3 X DC 10 ? ? C2 X DC 10 ? ? O2 X DC 10 ? ? 117.29 121.90 -4.61 0.70 N 41 2 "O4'" X DG 11 ? ? "C1'" X DG 11 ? ? N9 X DG 11 ? ? 110.88 108.30 2.58 0.30 N 42 2 "O4'" X DC 13 ? ? "C1'" X DC 13 ? ? N1 X DC 13 ? ? 111.07 108.30 2.77 0.30 N 43 2 N3 X DC 13 ? ? C2 X DC 13 ? ? O2 X DC 13 ? ? 117.25 121.90 -4.65 0.70 N 44 2 "O4'" X DG 15 ? ? "C1'" X DG 15 ? ? N9 X DG 15 ? ? 110.97 108.30 2.67 0.30 N 45 2 "O4'" X DG 16 ? ? "C1'" X DG 16 ? ? N9 X DG 16 ? ? 111.12 108.30 2.82 0.30 N 46 2 "O4'" X DA 17 ? ? "C1'" X DA 17 ? ? N9 X DA 17 ? ? 111.06 108.30 2.76 0.30 N 47 2 C4 X DA 17 ? ? C5 X DA 17 ? ? C6 X DA 17 ? ? 113.73 117.00 -3.27 0.50 N 48 2 C5 X DA 17 ? ? C6 X DA 17 ? ? N1 X DA 17 ? ? 121.38 117.70 3.68 0.50 N 49 2 N1 X DA 17 ? ? C6 X DA 17 ? ? N6 X DA 17 ? ? 113.26 118.60 -5.34 0.60 N 50 2 "O4'" X DC 18 ? ? "C1'" X DC 18 ? ? N1 X DC 18 ? ? 112.83 108.30 4.53 0.30 N 51 2 N3 X DC 18 ? ? C2 X DC 18 ? ? O2 X DC 18 ? ? 117.38 121.90 -4.52 0.70 N 52 2 "O4'" X DA 19 ? ? "C1'" X DA 19 ? ? N9 X DA 19 ? ? 110.33 108.30 2.03 0.30 N 53 2 C4 X DA 19 ? ? C5 X DA 19 ? ? C6 X DA 19 ? ? 113.54 117.00 -3.46 0.50 N 54 2 C5 X DA 19 ? ? C6 X DA 19 ? ? N1 X DA 19 ? ? 121.57 117.70 3.87 0.50 N 55 2 N1 X DA 19 ? ? C6 X DA 19 ? ? N6 X DA 19 ? ? 112.48 118.60 -6.12 0.60 N 56 3 C4 X DA 2 ? ? C5 X DA 2 ? ? C6 X DA 2 ? ? 113.54 117.00 -3.46 0.50 N 57 3 C5 X DA 2 ? ? C6 X DA 2 ? ? N1 X DA 2 ? ? 121.32 117.70 3.62 0.50 N 58 3 N1 X DA 2 ? ? C6 X DA 2 ? ? N6 X DA 2 ? ? 112.94 118.60 -5.66 0.60 N 59 3 "O4'" X DG 4 ? ? "C1'" X DG 4 ? ? N9 X DG 4 ? ? 110.23 108.30 1.93 0.30 N 60 3 "O4'" X DA 6 ? ? "C1'" X DA 6 ? ? N9 X DA 6 ? ? 110.18 108.30 1.88 0.30 N 61 3 C4 X DA 6 ? ? C5 X DA 6 ? ? C6 X DA 6 ? ? 113.69 117.00 -3.31 0.50 N 62 3 C5 X DA 6 ? ? C6 X DA 6 ? ? N1 X DA 6 ? ? 121.41 117.70 3.71 0.50 N 63 3 N1 X DA 6 ? ? C6 X DA 6 ? ? N6 X DA 6 ? ? 112.94 118.60 -5.66 0.60 N 64 3 "O4'" X DG 8 ? ? "C1'" X DG 8 ? ? N9 X DG 8 ? ? 113.53 108.30 5.23 0.30 N 65 3 "O4'" X DG 9 ? ? "C1'" X DG 9 ? ? N9 X DG 9 ? ? 112.03 108.30 3.73 0.30 N 66 3 "O4'" X DC 10 ? ? "C1'" X DC 10 ? ? N1 X DC 10 ? ? 111.42 108.30 3.12 0.30 N 67 3 N3 X DC 10 ? ? C2 X DC 10 ? ? O2 X DC 10 ? ? 117.43 121.90 -4.47 0.70 N 68 3 "O4'" X DG 11 ? ? "C1'" X DG 11 ? ? N9 X DG 11 ? ? 110.64 108.30 2.34 0.30 N 69 3 "O4'" X DC 13 ? ? "C1'" X DC 13 ? ? N1 X DC 13 ? ? 111.07 108.30 2.77 0.30 N 70 3 N3 X DC 13 ? ? C2 X DC 13 ? ? O2 X DC 13 ? ? 117.24 121.90 -4.66 0.70 N 71 3 "O4'" X DG 14 ? ? "C1'" X DG 14 ? ? N9 X DG 14 ? ? 110.76 108.30 2.46 0.30 N 72 3 "O4'" X DG 15 ? ? "C1'" X DG 15 ? ? N9 X DG 15 ? ? 112.46 108.30 4.16 0.30 N 73 3 "O4'" X DG 16 ? ? "C1'" X DG 16 ? ? N9 X DG 16 ? ? 110.66 108.30 2.36 0.30 N 74 3 "O4'" X DA 17 ? ? "C1'" X DA 17 ? ? N9 X DA 17 ? ? 111.53 108.30 3.23 0.30 N 75 3 C4 X DA 17 ? ? C5 X DA 17 ? ? C6 X DA 17 ? ? 113.72 117.00 -3.28 0.50 N 76 3 C5 X DA 17 ? ? C6 X DA 17 ? ? N1 X DA 17 ? ? 121.53 117.70 3.83 0.50 N 77 3 N1 X DA 17 ? ? C6 X DA 17 ? ? N6 X DA 17 ? ? 112.96 118.60 -5.64 0.60 N 78 3 "O4'" X DC 18 ? ? "C1'" X DC 18 ? ? N1 X DC 18 ? ? 112.28 108.30 3.98 0.30 N 79 3 N3 X DC 18 ? ? C2 X DC 18 ? ? O2 X DC 18 ? ? 117.47 121.90 -4.43 0.70 N 80 3 C4 X DA 19 ? ? C5 X DA 19 ? ? C6 X DA 19 ? ? 113.60 117.00 -3.40 0.50 N 81 3 C5 X DA 19 ? ? C6 X DA 19 ? ? N1 X DA 19 ? ? 121.68 117.70 3.98 0.50 N 82 3 N1 X DA 19 ? ? C6 X DA 19 ? ? N6 X DA 19 ? ? 112.90 118.60 -5.70 0.60 N 83 4 C4 X DA 2 ? ? C5 X DA 2 ? ? C6 X DA 2 ? ? 113.65 117.00 -3.35 0.50 N 84 4 C5 X DA 2 ? ? C6 X DA 2 ? ? N1 X DA 2 ? ? 121.25 117.70 3.55 0.50 N 85 4 N1 X DA 2 ? ? C6 X DA 2 ? ? N6 X DA 2 ? ? 113.05 118.60 -5.55 0.60 N 86 4 "O4'" X DG 4 ? ? "C1'" X DG 4 ? ? N9 X DG 4 ? ? 110.32 108.30 2.02 0.30 N 87 4 C4 X DA 6 ? ? C5 X DA 6 ? ? C6 X DA 6 ? ? 113.74 117.00 -3.26 0.50 N 88 4 C5 X DA 6 ? ? C6 X DA 6 ? ? N1 X DA 6 ? ? 121.41 117.70 3.71 0.50 N 89 4 N1 X DA 6 ? ? C6 X DA 6 ? ? N6 X DA 6 ? ? 112.88 118.60 -5.72 0.60 N 90 4 "O4'" X DG 8 ? ? "C1'" X DG 8 ? ? N9 X DG 8 ? ? 113.25 108.30 4.95 0.30 N 91 4 "O4'" X DG 9 ? ? "C1'" X DG 9 ? ? N9 X DG 9 ? ? 112.31 108.30 4.01 0.30 N 92 4 "O4'" X DC 10 ? ? "C1'" X DC 10 ? ? N1 X DC 10 ? ? 111.13 108.30 2.83 0.30 N 93 4 N3 X DC 10 ? ? C2 X DC 10 ? ? O2 X DC 10 ? ? 117.40 121.90 -4.50 0.70 N 94 4 "O4'" X DG 11 ? ? "C1'" X DG 11 ? ? N9 X DG 11 ? ? 110.99 108.30 2.69 0.30 N 95 4 "O4'" X DC 13 ? ? "C1'" X DC 13 ? ? N1 X DC 13 ? ? 110.21 108.30 1.91 0.30 N 96 4 N3 X DC 13 ? ? C2 X DC 13 ? ? O2 X DC 13 ? ? 117.17 121.90 -4.73 0.70 N 97 4 "O4'" X DG 15 ? ? "C1'" X DG 15 ? ? N9 X DG 15 ? ? 112.37 108.30 4.07 0.30 N 98 4 "O4'" X DG 16 ? ? "C1'" X DG 16 ? ? N9 X DG 16 ? ? 111.04 108.30 2.74 0.30 N 99 4 "O4'" X DA 17 ? ? "C1'" X DA 17 ? ? N9 X DA 17 ? ? 111.67 108.30 3.37 0.30 N 100 4 C4 X DA 17 ? ? C5 X DA 17 ? ? C6 X DA 17 ? ? 113.62 117.00 -3.38 0.50 N 101 4 C5 X DA 17 ? ? C6 X DA 17 ? ? N1 X DA 17 ? ? 121.44 117.70 3.74 0.50 N 102 4 N1 X DA 17 ? ? C6 X DA 17 ? ? N6 X DA 17 ? ? 112.96 118.60 -5.64 0.60 N 103 4 "O4'" X DC 18 ? ? "C1'" X DC 18 ? ? N1 X DC 18 ? ? 112.68 108.30 4.38 0.30 N 104 4 N3 X DC 18 ? ? C2 X DC 18 ? ? O2 X DC 18 ? ? 117.51 121.90 -4.39 0.70 N 105 4 C4 X DA 19 ? ? C5 X DA 19 ? ? C6 X DA 19 ? ? 113.47 117.00 -3.53 0.50 N 106 4 C5 X DA 19 ? ? C6 X DA 19 ? ? N1 X DA 19 ? ? 121.72 117.70 4.02 0.50 N 107 4 N1 X DA 19 ? ? C6 X DA 19 ? ? N6 X DA 19 ? ? 112.65 118.60 -5.95 0.60 N 108 5 C4 X DA 2 ? ? C5 X DA 2 ? ? C6 X DA 2 ? ? 113.58 117.00 -3.42 0.50 N 109 5 C5 X DA 2 ? ? C6 X DA 2 ? ? N1 X DA 2 ? ? 121.34 117.70 3.64 0.50 N 110 5 N1 X DA 2 ? ? C6 X DA 2 ? ? N6 X DA 2 ? ? 112.99 118.60 -5.61 0.60 N 111 5 "O4'" X DG 3 ? ? "C1'" X DG 3 ? ? N9 X DG 3 ? ? 110.62 108.30 2.32 0.30 N 112 5 "O4'" X DA 6 ? ? "C1'" X DA 6 ? ? N9 X DA 6 ? ? 110.15 108.30 1.85 0.30 N 113 5 C4 X DA 6 ? ? C5 X DA 6 ? ? C6 X DA 6 ? ? 113.74 117.00 -3.26 0.50 N 114 5 C5 X DA 6 ? ? C6 X DA 6 ? ? N1 X DA 6 ? ? 121.38 117.70 3.68 0.50 N 115 5 N1 X DA 6 ? ? C6 X DA 6 ? ? N6 X DA 6 ? ? 112.88 118.60 -5.72 0.60 N 116 5 "O4'" X DG 9 ? ? "C1'" X DG 9 ? ? N9 X DG 9 ? ? 111.62 108.30 3.32 0.30 N 117 5 N3 X DC 10 ? ? C2 X DC 10 ? ? O2 X DC 10 ? ? 117.29 121.90 -4.61 0.70 N 118 5 "O4'" X DG 11 ? ? "C1'" X DG 11 ? ? N9 X DG 11 ? ? 110.75 108.30 2.45 0.30 N 119 5 "O4'" X DC 13 ? ? "C1'" X DC 13 ? ? N1 X DC 13 ? ? 110.22 108.30 1.92 0.30 N 120 5 N3 X DC 13 ? ? C2 X DC 13 ? ? O2 X DC 13 ? ? 117.13 121.90 -4.77 0.70 N 121 5 "O4'" X DA 17 ? ? "C1'" X DA 17 ? ? N9 X DA 17 ? ? 111.31 108.30 3.01 0.30 N 122 5 C4 X DA 17 ? ? C5 X DA 17 ? ? C6 X DA 17 ? ? 113.83 117.00 -3.17 0.50 N 123 5 C5 X DA 17 ? ? C6 X DA 17 ? ? N1 X DA 17 ? ? 121.47 117.70 3.77 0.50 N 124 5 N1 X DA 17 ? ? C6 X DA 17 ? ? N6 X DA 17 ? ? 113.04 118.60 -5.56 0.60 N 125 5 "O4'" X DC 18 ? ? "C1'" X DC 18 ? ? N1 X DC 18 ? ? 110.49 108.30 2.19 0.30 N 126 5 N3 X DC 18 ? ? C2 X DC 18 ? ? O2 X DC 18 ? ? 117.55 121.90 -4.35 0.70 N 127 5 "O4'" X DA 19 ? ? "C1'" X DA 19 ? ? N9 X DA 19 ? ? 110.42 108.30 2.12 0.30 N 128 5 C4 X DA 19 ? ? C5 X DA 19 ? ? C6 X DA 19 ? ? 113.65 117.00 -3.35 0.50 N 129 5 C5 X DA 19 ? ? C6 X DA 19 ? ? N1 X DA 19 ? ? 121.55 117.70 3.85 0.50 N 130 5 N1 X DA 19 ? ? C6 X DA 19 ? ? N6 X DA 19 ? ? 112.31 118.60 -6.29 0.60 N 131 6 C4 X DA 2 ? ? C5 X DA 2 ? ? C6 X DA 2 ? ? 113.55 117.00 -3.45 0.50 N 132 6 C5 X DA 2 ? ? C6 X DA 2 ? ? N1 X DA 2 ? ? 121.41 117.70 3.71 0.50 N 133 6 N1 X DA 2 ? ? C6 X DA 2 ? ? N6 X DA 2 ? ? 112.87 118.60 -5.73 0.60 N 134 6 "O4'" X DG 3 ? ? "C1'" X DG 3 ? ? N9 X DG 3 ? ? 110.22 108.30 1.92 0.30 N 135 6 "O4'" X DG 4 ? ? "C1'" X DG 4 ? ? N9 X DG 4 ? ? 110.76 108.30 2.46 0.30 N 136 6 "O4'" X DG 5 ? ? "C1'" X DG 5 ? ? N9 X DG 5 ? ? 111.34 108.30 3.04 0.30 N 137 6 C4 X DA 6 ? ? C5 X DA 6 ? ? C6 X DA 6 ? ? 113.77 117.00 -3.23 0.50 N 138 6 C5 X DA 6 ? ? C6 X DA 6 ? ? N1 X DA 6 ? ? 121.46 117.70 3.76 0.50 N 139 6 N1 X DA 6 ? ? C6 X DA 6 ? ? N6 X DA 6 ? ? 112.95 118.60 -5.65 0.60 N 140 6 "O4'" X DG 8 ? ? "C1'" X DG 8 ? ? N9 X DG 8 ? ? 113.09 108.30 4.79 0.30 N 141 6 "O4'" X DG 9 ? ? "C1'" X DG 9 ? ? N9 X DG 9 ? ? 111.98 108.30 3.68 0.30 N 142 6 "O4'" X DC 10 ? ? "C1'" X DC 10 ? ? N1 X DC 10 ? ? 111.76 108.30 3.46 0.30 N 143 6 N3 X DC 10 ? ? C2 X DC 10 ? ? O2 X DC 10 ? ? 117.37 121.90 -4.53 0.70 N 144 6 "O4'" X DG 11 ? ? "C1'" X DG 11 ? ? N9 X DG 11 ? ? 110.98 108.30 2.68 0.30 N 145 6 "O4'" X DG 12 ? ? "C1'" X DG 12 ? ? N9 X DG 12 ? ? 110.31 108.30 2.01 0.30 N 146 6 N3 X DC 13 ? ? C2 X DC 13 ? ? O2 X DC 13 ? ? 117.10 121.90 -4.80 0.70 N 147 6 "O4'" X DG 15 ? ? "C1'" X DG 15 ? ? N9 X DG 15 ? ? 111.90 108.30 3.60 0.30 N 148 6 "O4'" X DG 16 ? ? "C1'" X DG 16 ? ? N9 X DG 16 ? ? 111.23 108.30 2.93 0.30 N 149 6 C4 X DA 17 ? ? C5 X DA 17 ? ? C6 X DA 17 ? ? 113.82 117.00 -3.18 0.50 N 150 6 C5 X DA 17 ? ? C6 X DA 17 ? ? N1 X DA 17 ? ? 121.38 117.70 3.68 0.50 N 151 6 N1 X DA 17 ? ? C6 X DA 17 ? ? N6 X DA 17 ? ? 113.49 118.60 -5.11 0.60 N 152 6 "O4'" X DC 18 ? ? "C1'" X DC 18 ? ? N1 X DC 18 ? ? 112.28 108.30 3.98 0.30 N 153 6 N3 X DC 18 ? ? C2 X DC 18 ? ? O2 X DC 18 ? ? 117.60 121.90 -4.30 0.70 N 154 6 C4 X DA 19 ? ? C5 X DA 19 ? ? C6 X DA 19 ? ? 113.55 117.00 -3.45 0.50 N 155 6 C5 X DA 19 ? ? C6 X DA 19 ? ? N1 X DA 19 ? ? 121.59 117.70 3.89 0.50 N 156 6 N1 X DA 19 ? ? C6 X DA 19 ? ? N6 X DA 19 ? ? 112.61 118.60 -5.99 0.60 N 157 7 C4 X DA 2 ? ? C5 X DA 2 ? ? C6 X DA 2 ? ? 113.49 117.00 -3.51 0.50 N 158 7 C5 X DA 2 ? ? C6 X DA 2 ? ? N1 X DA 2 ? ? 121.36 117.70 3.66 0.50 N 159 7 N1 X DA 2 ? ? C6 X DA 2 ? ? N6 X DA 2 ? ? 112.96 118.60 -5.64 0.60 N 160 7 "O4'" X DG 3 ? ? "C1'" X DG 3 ? ? N9 X DG 3 ? ? 110.82 108.30 2.52 0.30 N 161 7 "O4'" X DA 6 ? ? "C1'" X DA 6 ? ? N9 X DA 6 ? ? 110.76 108.30 2.46 0.30 N 162 7 C4 X DA 6 ? ? C5 X DA 6 ? ? C6 X DA 6 ? ? 113.66 117.00 -3.34 0.50 N 163 7 C5 X DA 6 ? ? C6 X DA 6 ? ? N1 X DA 6 ? ? 121.39 117.70 3.69 0.50 N 164 7 N1 X DA 6 ? ? C6 X DA 6 ? ? N6 X DA 6 ? ? 113.05 118.60 -5.55 0.60 N 165 7 N3 X DG 8 ? ? C2 X DG 8 ? ? N2 X DG 8 ? ? 115.59 119.90 -4.31 0.70 N 166 7 "O4'" X DG 9 ? ? "C1'" X DG 9 ? ? N9 X DG 9 ? ? 111.86 108.30 3.56 0.30 N 167 7 N3 X DG 9 ? ? C2 X DG 9 ? ? N2 X DG 9 ? ? 115.67 119.90 -4.23 0.70 N 168 7 "O4'" X DC 10 ? ? "C1'" X DC 10 ? ? N1 X DC 10 ? ? 111.05 108.30 2.75 0.30 N 169 7 N3 X DC 10 ? ? C2 X DC 10 ? ? O2 X DC 10 ? ? 117.17 121.90 -4.73 0.70 N 170 7 "O4'" X DG 11 ? ? "C1'" X DG 11 ? ? N9 X DG 11 ? ? 110.93 108.30 2.63 0.30 N 171 7 "O4'" X DG 12 ? ? "C1'" X DG 12 ? ? N9 X DG 12 ? ? 110.16 108.30 1.86 0.30 N 172 7 "O4'" X DC 13 ? ? "C1'" X DC 13 ? ? N1 X DC 13 ? ? 110.72 108.30 2.42 0.30 N 173 7 N3 X DC 13 ? ? C2 X DC 13 ? ? O2 X DC 13 ? ? 117.07 121.90 -4.83 0.70 N 174 7 "O4'" X DG 16 ? ? "C1'" X DG 16 ? ? N9 X DG 16 ? ? 110.30 108.30 2.00 0.30 N 175 7 C4 X DA 17 ? ? C5 X DA 17 ? ? C6 X DA 17 ? ? 113.76 117.00 -3.24 0.50 N 176 7 C5 X DA 17 ? ? C6 X DA 17 ? ? N1 X DA 17 ? ? 121.39 117.70 3.69 0.50 N 177 7 N1 X DA 17 ? ? C6 X DA 17 ? ? N6 X DA 17 ? ? 113.41 118.60 -5.19 0.60 N 178 7 "O4'" X DC 18 ? ? "C1'" X DC 18 ? ? N1 X DC 18 ? ? 111.22 108.30 2.92 0.30 N 179 7 N3 X DC 18 ? ? C2 X DC 18 ? ? O2 X DC 18 ? ? 117.56 121.90 -4.34 0.70 N 180 7 C4 X DA 19 ? ? C5 X DA 19 ? ? C6 X DA 19 ? ? 113.41 117.00 -3.59 0.50 N 181 7 C5 X DA 19 ? ? C6 X DA 19 ? ? N1 X DA 19 ? ? 121.76 117.70 4.06 0.50 N 182 7 N1 X DA 19 ? ? C6 X DA 19 ? ? N6 X DA 19 ? ? 112.77 118.60 -5.83 0.60 N 183 8 C4 X DA 2 ? ? C5 X DA 2 ? ? C6 X DA 2 ? ? 113.52 117.00 -3.48 0.50 N 184 8 C5 X DA 2 ? ? C6 X DA 2 ? ? N1 X DA 2 ? ? 121.36 117.70 3.66 0.50 N 185 8 N1 X DA 2 ? ? C6 X DA 2 ? ? N6 X DA 2 ? ? 112.83 118.60 -5.77 0.60 N 186 8 "O4'" X DG 3 ? ? "C1'" X DG 3 ? ? N9 X DG 3 ? ? 110.92 108.30 2.62 0.30 N 187 8 "O4'" X DA 6 ? ? "C1'" X DA 6 ? ? N9 X DA 6 ? ? 110.14 108.30 1.84 0.30 N 188 8 C4 X DA 6 ? ? C5 X DA 6 ? ? C6 X DA 6 ? ? 113.62 117.00 -3.38 0.50 N 189 8 C5 X DA 6 ? ? C6 X DA 6 ? ? N1 X DA 6 ? ? 121.46 117.70 3.76 0.50 N 190 8 N1 X DA 6 ? ? C6 X DA 6 ? ? N6 X DA 6 ? ? 113.12 118.60 -5.48 0.60 N 191 8 "O4'" X DG 7 ? ? "C1'" X DG 7 ? ? N9 X DG 7 ? ? 110.72 108.30 2.42 0.30 N 192 8 "O4'" X DG 8 ? ? "C1'" X DG 8 ? ? N9 X DG 8 ? ? 112.16 108.30 3.86 0.30 N 193 8 "O4'" X DG 9 ? ? "C1'" X DG 9 ? ? N9 X DG 9 ? ? 112.44 108.30 4.14 0.30 N 194 8 "O4'" X DC 10 ? ? "C1'" X DC 10 ? ? N1 X DC 10 ? ? 110.39 108.30 2.09 0.30 N 195 8 N3 X DC 10 ? ? C2 X DC 10 ? ? O2 X DC 10 ? ? 117.28 121.90 -4.62 0.70 N 196 8 "O4'" X DG 11 ? ? "C1'" X DG 11 ? ? N9 X DG 11 ? ? 110.70 108.30 2.40 0.30 N 197 8 N3 X DC 13 ? ? C2 X DC 13 ? ? O2 X DC 13 ? ? 117.22 121.90 -4.68 0.70 N 198 8 "O4'" X DG 16 ? ? "C1'" X DG 16 ? ? N9 X DG 16 ? ? 110.79 108.30 2.49 0.30 N 199 8 C4 X DA 17 ? ? C5 X DA 17 ? ? C6 X DA 17 ? ? 113.78 117.00 -3.22 0.50 N 200 8 C5 X DA 17 ? ? C6 X DA 17 ? ? N1 X DA 17 ? ? 121.55 117.70 3.85 0.50 N 201 8 N1 X DA 17 ? ? C6 X DA 17 ? ? N6 X DA 17 ? ? 113.13 118.60 -5.47 0.60 N 202 8 "O4'" X DC 18 ? ? "C1'" X DC 18 ? ? N1 X DC 18 ? ? 112.42 108.30 4.12 0.30 N 203 8 N3 X DC 18 ? ? C2 X DC 18 ? ? O2 X DC 18 ? ? 117.37 121.90 -4.53 0.70 N 204 8 C4 X DA 19 ? ? C5 X DA 19 ? ? C6 X DA 19 ? ? 113.45 117.00 -3.55 0.50 N 205 8 C5 X DA 19 ? ? C6 X DA 19 ? ? N1 X DA 19 ? ? 121.72 117.70 4.02 0.50 N 206 8 N1 X DA 19 ? ? C6 X DA 19 ? ? N6 X DA 19 ? ? 112.48 118.60 -6.12 0.60 N 207 9 C4 X DA 2 ? ? C5 X DA 2 ? ? C6 X DA 2 ? ? 113.55 117.00 -3.45 0.50 N 208 9 C5 X DA 2 ? ? C6 X DA 2 ? ? N1 X DA 2 ? ? 121.35 117.70 3.65 0.50 N 209 9 N1 X DA 2 ? ? C6 X DA 2 ? ? N6 X DA 2 ? ? 112.94 118.60 -5.66 0.60 N 210 9 "O4'" X DG 3 ? ? "C1'" X DG 3 ? ? N9 X DG 3 ? ? 110.46 108.30 2.16 0.30 N 211 9 "O4'" X DG 4 ? ? "C1'" X DG 4 ? ? N9 X DG 4 ? ? 111.05 108.30 2.75 0.30 N 212 9 "O4'" X DA 6 ? ? "C1'" X DA 6 ? ? N9 X DA 6 ? ? 110.45 108.30 2.15 0.30 N 213 9 C4 X DA 6 ? ? C5 X DA 6 ? ? C6 X DA 6 ? ? 113.80 117.00 -3.20 0.50 N 214 9 C5 X DA 6 ? ? C6 X DA 6 ? ? N1 X DA 6 ? ? 121.37 117.70 3.67 0.50 N 215 9 N1 X DA 6 ? ? C6 X DA 6 ? ? N6 X DA 6 ? ? 112.83 118.60 -5.77 0.60 N 216 9 "O4'" X DG 8 ? ? "C1'" X DG 8 ? ? N9 X DG 8 ? ? 113.27 108.30 4.97 0.30 N 217 9 "O4'" X DG 9 ? ? "C1'" X DG 9 ? ? N9 X DG 9 ? ? 111.50 108.30 3.20 0.30 N 218 9 N3 X DC 10 ? ? C2 X DC 10 ? ? O2 X DC 10 ? ? 117.31 121.90 -4.59 0.70 N 219 9 "O4'" X DG 11 ? ? "C1'" X DG 11 ? ? N9 X DG 11 ? ? 110.95 108.30 2.65 0.30 N 220 9 "O4'" X DC 13 ? ? "C1'" X DC 13 ? ? N1 X DC 13 ? ? 110.57 108.30 2.27 0.30 N 221 9 N3 X DC 13 ? ? C2 X DC 13 ? ? O2 X DC 13 ? ? 117.23 121.90 -4.67 0.70 N 222 9 "O4'" X DG 14 ? ? "C1'" X DG 14 ? ? N9 X DG 14 ? ? 110.96 108.30 2.66 0.30 N 223 9 "O4'" X DG 15 ? ? "C1'" X DG 15 ? ? N9 X DG 15 ? ? 112.07 108.30 3.77 0.30 N 224 9 "O4'" X DG 16 ? ? "C1'" X DG 16 ? ? N9 X DG 16 ? ? 111.02 108.30 2.72 0.30 N 225 9 "O4'" X DA 17 ? ? "C1'" X DA 17 ? ? N9 X DA 17 ? ? 110.89 108.30 2.59 0.30 N 226 9 C4 X DA 17 ? ? C5 X DA 17 ? ? C6 X DA 17 ? ? 113.77 117.00 -3.23 0.50 N 227 9 C5 X DA 17 ? ? C6 X DA 17 ? ? N1 X DA 17 ? ? 121.41 117.70 3.71 0.50 N 228 9 N1 X DA 17 ? ? C6 X DA 17 ? ? N6 X DA 17 ? ? 113.33 118.60 -5.27 0.60 N 229 9 "O4'" X DC 18 ? ? "C1'" X DC 18 ? ? N1 X DC 18 ? ? 112.12 108.30 3.82 0.30 N 230 9 N3 X DC 18 ? ? C2 X DC 18 ? ? O2 X DC 18 ? ? 117.56 121.90 -4.34 0.70 N 231 9 C4 X DA 19 ? ? C5 X DA 19 ? ? C6 X DA 19 ? ? 113.40 117.00 -3.60 0.50 N 232 9 C5 X DA 19 ? ? C6 X DA 19 ? ? N1 X DA 19 ? ? 121.72 117.70 4.02 0.50 N 233 9 N1 X DA 19 ? ? C6 X DA 19 ? ? N6 X DA 19 ? ? 112.73 118.60 -5.87 0.60 N 234 10 "O4'" X DA 2 ? ? "C1'" X DA 2 ? ? N9 X DA 2 ? ? 110.17 108.30 1.87 0.30 N 235 10 C4 X DA 2 ? ? C5 X DA 2 ? ? C6 X DA 2 ? ? 113.52 117.00 -3.48 0.50 N 236 10 C5 X DA 2 ? ? C6 X DA 2 ? ? N1 X DA 2 ? ? 121.36 117.70 3.66 0.50 N 237 10 N1 X DA 2 ? ? C6 X DA 2 ? ? N6 X DA 2 ? ? 112.93 118.60 -5.67 0.60 N 238 10 C4 X DA 6 ? ? C5 X DA 6 ? ? C6 X DA 6 ? ? 113.61 117.00 -3.39 0.50 N 239 10 C5 X DA 6 ? ? C6 X DA 6 ? ? N1 X DA 6 ? ? 121.47 117.70 3.77 0.50 N 240 10 N1 X DA 6 ? ? C6 X DA 6 ? ? N6 X DA 6 ? ? 112.99 118.60 -5.61 0.60 N 241 10 "O4'" X DG 7 ? ? "C1'" X DG 7 ? ? N9 X DG 7 ? ? 110.16 108.30 1.86 0.30 N 242 10 "O4'" X DG 8 ? ? "C1'" X DG 8 ? ? N9 X DG 8 ? ? 110.38 108.30 2.08 0.30 N 243 10 "O4'" X DG 9 ? ? "C1'" X DG 9 ? ? N9 X DG 9 ? ? 112.02 108.30 3.72 0.30 N 244 10 "O4'" X DC 10 ? ? "C1'" X DC 10 ? ? N1 X DC 10 ? ? 110.22 108.30 1.92 0.30 N 245 10 N3 X DC 10 ? ? C2 X DC 10 ? ? O2 X DC 10 ? ? 117.10 121.90 -4.80 0.70 N 246 10 "O4'" X DG 11 ? ? "C1'" X DG 11 ? ? N9 X DG 11 ? ? 111.17 108.30 2.87 0.30 N 247 10 "O4'" X DG 12 ? ? "C1'" X DG 12 ? ? N9 X DG 12 ? ? 110.26 108.30 1.96 0.30 N 248 10 "O4'" X DC 13 ? ? "C1'" X DC 13 ? ? N1 X DC 13 ? ? 110.16 108.30 1.86 0.30 N 249 10 N3 X DC 13 ? ? C2 X DC 13 ? ? O2 X DC 13 ? ? 117.20 121.90 -4.70 0.70 N 250 10 "O4'" X DG 15 ? ? "C1'" X DG 15 ? ? N9 X DG 15 ? ? 110.67 108.30 2.37 0.30 N 251 10 "O4'" X DG 16 ? ? "C1'" X DG 16 ? ? N9 X DG 16 ? ? 111.09 108.30 2.79 0.30 N 252 10 "O4'" X DA 17 ? ? "C1'" X DA 17 ? ? N9 X DA 17 ? ? 111.75 108.30 3.45 0.30 N 253 10 C4 X DA 17 ? ? C5 X DA 17 ? ? C6 X DA 17 ? ? 113.62 117.00 -3.38 0.50 N 254 10 C5 X DA 17 ? ? C6 X DA 17 ? ? N1 X DA 17 ? ? 121.49 117.70 3.79 0.50 N 255 10 N1 X DA 17 ? ? C6 X DA 17 ? ? N6 X DA 17 ? ? 112.92 118.60 -5.68 0.60 N 256 10 "O4'" X DC 18 ? ? "C1'" X DC 18 ? ? N1 X DC 18 ? ? 112.44 108.30 4.14 0.30 N 257 10 N3 X DC 18 ? ? C2 X DC 18 ? ? O2 X DC 18 ? ? 117.56 121.90 -4.34 0.70 N 258 10 C4 X DA 19 ? ? C5 X DA 19 ? ? C6 X DA 19 ? ? 113.50 117.00 -3.50 0.50 N 259 10 C5 X DA 19 ? ? C6 X DA 19 ? ? N1 X DA 19 ? ? 121.59 117.70 3.89 0.50 N 260 10 N1 X DA 19 ? ? C6 X DA 19 ? ? N6 X DA 19 ? ? 112.47 118.60 -6.13 0.60 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG X 8 ? ? 0.063 'SIDE CHAIN' 2 1 DG X 16 ? ? 0.050 'SIDE CHAIN' 3 1 DA X 17 ? ? 0.110 'SIDE CHAIN' 4 2 DG X 12 ? ? 0.066 'SIDE CHAIN' 5 2 DA X 17 ? ? 0.066 'SIDE CHAIN' 6 3 DG X 3 ? ? 0.068 'SIDE CHAIN' 7 3 DG X 5 ? ? 0.079 'SIDE CHAIN' 8 3 DG X 8 ? ? 0.075 'SIDE CHAIN' 9 3 DG X 14 ? ? 0.058 'SIDE CHAIN' 10 3 DA X 17 ? ? 0.063 'SIDE CHAIN' 11 4 DG X 3 ? ? 0.071 'SIDE CHAIN' 12 4 DG X 8 ? ? 0.072 'SIDE CHAIN' 13 4 DA X 17 ? ? 0.079 'SIDE CHAIN' 14 6 DG X 8 ? ? 0.056 'SIDE CHAIN' 15 9 DG X 8 ? ? 0.072 'SIDE CHAIN' 16 9 DA X 17 ? ? 0.067 'SIDE CHAIN' 17 10 DG X 12 ? ? 0.059 'SIDE CHAIN' 18 10 DA X 17 ? ? 0.081 'SIDE CHAIN' # _pdbx_entry_details.entry_id 6V0L _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_nmr_ensemble.entry_id 6V0L _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6V0L _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents ;3600 uM 1H DNA (5'-D(*(DA5)P*AP*GP*GP*GP*AP*GP*GP*GP*CP*GP*GP*CP*GP*GP*GP*AP*CP*(DA3)P*-3')(DGP), 90% H2O/10% D2O ; _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label 1H_sample _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # _pdbx_nmr_exptl_sample.solution_id 1 _pdbx_nmr_exptl_sample.component ;DNA (5'-D(*(DA5)P*AP*GP*GP*GP*AP*GP*GP*GP*CP*GP*GP*CP*GP*GP*GP*AP*CP*(DA3)P*-3')(DGP) ; _pdbx_nmr_exptl_sample.concentration 3600 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units uM _pdbx_nmr_exptl_sample.isotopic_labeling 1H # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 288 mmHg 760 7.0 50 ? ? mM conditions_1 ? pH ? ? K 2 298 mmHg 760 7 50 ? ? mM conditions_2 ? pH ? ? K 3 278 mmHg 760 7 50 ? ? mM conditions_3 ? pH ? ? K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 3 1 '2D 1H-1H TOCSY' 2 isotropic 2 1 1 '2D 1H-1H NOESY' 2 isotropic 6 2 1 '2D 1H-1H NOESY' 2 isotropic 5 3 1 '2D 1H-1H NOESY' 2 isotropic 3 3 1 '2D 1H-1H COSY' 2 isotropic 4 2 1 '2D 1H-13C HSQC' 2 isotropic # loop_ _pdbx_nmr_refine.entry_id _pdbx_nmr_refine.method _pdbx_nmr_refine.details _pdbx_nmr_refine.software_ordinal 6V0L 'torsion angle dynamics' ? 3 6V0L 'simulated annealing' 'molecular dynamics' 2 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'chemical shift assignment' Sparky ? Goddard 2 refinement Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, and Kollman' 3 refinement 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' 4 'peak picking' Sparky ? Goddard 5 processing TopSpin ? 'Bruker Biospin' 6 'structure calculation' Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, and Kollman' 7 'structure calculation' 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 3D1 "O5'" O N N 1 3D1 "C5'" C N N 2 3D1 "C4'" C N R 3 3D1 "O4'" O N N 4 3D1 "C1'" C N R 5 3D1 N9 N Y N 6 3D1 C4 C Y N 7 3D1 N3 N Y N 8 3D1 C2 C Y N 9 3D1 N1 N Y N 10 3D1 C6 C Y N 11 3D1 N6 N N N 12 3D1 C5 C Y N 13 3D1 N7 N Y N 14 3D1 C8 C Y N 15 3D1 "C2'" C N N 16 3D1 "C3'" C N S 17 3D1 "O3'" O N N 18 3D1 "H5'" H N N 19 3D1 "H5'1" H N N 20 3D1 "H5'2" H N N 21 3D1 "H4'" H N N 22 3D1 "H1'" H N N 23 3D1 H2 H N N 24 3D1 HN61 H N N 25 3D1 HN62 H N N 26 3D1 H8 H N N 27 3D1 "H2'1" H N N 28 3D1 "H2'2" H N N 29 3D1 "H3'" H N N 30 3D1 H1 H N N 31 DA OP3 O N N 32 DA P P N N 33 DA OP1 O N N 34 DA OP2 O N N 35 DA "O5'" O N N 36 DA "C5'" C N N 37 DA "C4'" C N R 38 DA "O4'" O N N 39 DA "C3'" C N S 40 DA "O3'" O N N 41 DA "C2'" C N N 42 DA "C1'" C N R 43 DA N9 N Y N 44 DA C8 C Y N 45 DA N7 N Y N 46 DA C5 C Y N 47 DA C6 C Y N 48 DA N6 N N N 49 DA N1 N Y N 50 DA C2 C Y N 51 DA N3 N Y N 52 DA C4 C Y N 53 DA HOP3 H N N 54 DA HOP2 H N N 55 DA "H5'" H N N 56 DA "H5''" H N N 57 DA "H4'" H N N 58 DA "H3'" H N N 59 DA "HO3'" H N N 60 DA "H2'" H N N 61 DA "H2''" H N N 62 DA "H1'" H N N 63 DA H8 H N N 64 DA H61 H N N 65 DA H62 H N N 66 DA H2 H N N 67 DC OP3 O N N 68 DC P P N N 69 DC OP1 O N N 70 DC OP2 O N N 71 DC "O5'" O N N 72 DC "C5'" C N N 73 DC "C4'" C N R 74 DC "O4'" O N N 75 DC "C3'" C N S 76 DC "O3'" O N N 77 DC "C2'" C N N 78 DC "C1'" C N R 79 DC N1 N N N 80 DC C2 C N N 81 DC O2 O N N 82 DC N3 N N N 83 DC C4 C N N 84 DC N4 N N N 85 DC C5 C N N 86 DC C6 C N N 87 DC HOP3 H N N 88 DC HOP2 H N N 89 DC "H5'" H N N 90 DC "H5''" H N N 91 DC "H4'" H N N 92 DC "H3'" H N N 93 DC "HO3'" H N N 94 DC "H2'" H N N 95 DC "H2''" H N N 96 DC "H1'" H N N 97 DC H41 H N N 98 DC H42 H N N 99 DC H5 H N N 100 DC H6 H N N 101 DG OP3 O N N 102 DG P P N N 103 DG OP1 O N N 104 DG OP2 O N N 105 DG "O5'" O N N 106 DG "C5'" C N N 107 DG "C4'" C N R 108 DG "O4'" O N N 109 DG "C3'" C N S 110 DG "O3'" O N N 111 DG "C2'" C N N 112 DG "C1'" C N R 113 DG N9 N Y N 114 DG C8 C Y N 115 DG N7 N Y N 116 DG C5 C Y N 117 DG C6 C N N 118 DG O6 O N N 119 DG N1 N N N 120 DG C2 C N N 121 DG N2 N N N 122 DG N3 N N N 123 DG C4 C Y N 124 DG HOP3 H N N 125 DG HOP2 H N N 126 DG "H5'" H N N 127 DG "H5''" H N N 128 DG "H4'" H N N 129 DG "H3'" H N N 130 DG "HO3'" H N N 131 DG "H2'" H N N 132 DG "H2''" H N N 133 DG "H1'" H N N 134 DG H8 H N N 135 DG H1 H N N 136 DG H21 H N N 137 DG H22 H N N 138 DGP P P N N 139 DGP OP1 O N N 140 DGP OP2 O N N 141 DGP OP3 O N N 142 DGP "O5'" O N N 143 DGP "C5'" C N N 144 DGP "C4'" C N R 145 DGP "O4'" O N N 146 DGP "C3'" C N S 147 DGP "O3'" O N N 148 DGP "C2'" C N N 149 DGP "C1'" C N R 150 DGP N9 N Y N 151 DGP C8 C Y N 152 DGP N7 N Y N 153 DGP C5 C Y N 154 DGP C6 C N N 155 DGP O6 O N N 156 DGP N1 N N N 157 DGP C2 C N N 158 DGP N2 N N N 159 DGP N3 N N N 160 DGP C4 C Y N 161 DGP HOP2 H N N 162 DGP HOP3 H N N 163 DGP "H5'" H N N 164 DGP "H5''" H N N 165 DGP "H4'" H N N 166 DGP "H3'" H N N 167 DGP "HO3'" H N N 168 DGP "H2'" H N N 169 DGP "H2''" H N N 170 DGP "H1'" H N N 171 DGP H8 H N N 172 DGP HN1 H N N 173 DGP HN21 H N N 174 DGP HN22 H N N 175 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3D1 "O5'" "C5'" sing N N 1 3D1 "O5'" "H5'" sing N N 2 3D1 "C5'" "C4'" sing N N 3 3D1 "C5'" "H5'1" sing N N 4 3D1 "C5'" "H5'2" sing N N 5 3D1 "C4'" "O4'" sing N N 6 3D1 "C4'" "C3'" sing N N 7 3D1 "C4'" "H4'" sing N N 8 3D1 "O4'" "C1'" sing N N 9 3D1 "C1'" N9 sing N N 10 3D1 "C1'" "C2'" sing N N 11 3D1 "C1'" "H1'" sing N N 12 3D1 N9 C4 sing Y N 13 3D1 N9 C8 sing Y N 14 3D1 C4 N3 doub Y N 15 3D1 C4 C5 sing Y N 16 3D1 N3 C2 sing Y N 17 3D1 C2 N1 doub Y N 18 3D1 C2 H2 sing N N 19 3D1 N1 C6 sing Y N 20 3D1 C6 N6 sing N N 21 3D1 C6 C5 doub Y N 22 3D1 N6 HN61 sing N N 23 3D1 N6 HN62 sing N N 24 3D1 C5 N7 sing Y N 25 3D1 N7 C8 doub Y N 26 3D1 C8 H8 sing N N 27 3D1 "C2'" "C3'" sing N N 28 3D1 "C2'" "H2'1" sing N N 29 3D1 "C2'" "H2'2" sing N N 30 3D1 "C3'" "O3'" sing N N 31 3D1 "C3'" "H3'" sing N N 32 3D1 "O3'" H1 sing N N 33 DA OP3 P sing N N 34 DA OP3 HOP3 sing N N 35 DA P OP1 doub N N 36 DA P OP2 sing N N 37 DA P "O5'" sing N N 38 DA OP2 HOP2 sing N N 39 DA "O5'" "C5'" sing N N 40 DA "C5'" "C4'" sing N N 41 DA "C5'" "H5'" sing N N 42 DA "C5'" "H5''" sing N N 43 DA "C4'" "O4'" sing N N 44 DA "C4'" "C3'" sing N N 45 DA "C4'" "H4'" sing N N 46 DA "O4'" "C1'" sing N N 47 DA "C3'" "O3'" sing N N 48 DA "C3'" "C2'" sing N N 49 DA "C3'" "H3'" sing N N 50 DA "O3'" "HO3'" sing N N 51 DA "C2'" "C1'" sing N N 52 DA "C2'" "H2'" sing N N 53 DA "C2'" "H2''" sing N N 54 DA "C1'" N9 sing N N 55 DA "C1'" "H1'" sing N N 56 DA N9 C8 sing Y N 57 DA N9 C4 sing Y N 58 DA C8 N7 doub Y N 59 DA C8 H8 sing N N 60 DA N7 C5 sing Y N 61 DA C5 C6 sing Y N 62 DA C5 C4 doub Y N 63 DA C6 N6 sing N N 64 DA C6 N1 doub Y N 65 DA N6 H61 sing N N 66 DA N6 H62 sing N N 67 DA N1 C2 sing Y N 68 DA C2 N3 doub Y N 69 DA C2 H2 sing N N 70 DA N3 C4 sing Y N 71 DC OP3 P sing N N 72 DC OP3 HOP3 sing N N 73 DC P OP1 doub N N 74 DC P OP2 sing N N 75 DC P "O5'" sing N N 76 DC OP2 HOP2 sing N N 77 DC "O5'" "C5'" sing N N 78 DC "C5'" "C4'" sing N N 79 DC "C5'" "H5'" sing N N 80 DC "C5'" "H5''" sing N N 81 DC "C4'" "O4'" sing N N 82 DC "C4'" "C3'" sing N N 83 DC "C4'" "H4'" sing N N 84 DC "O4'" "C1'" sing N N 85 DC "C3'" "O3'" sing N N 86 DC "C3'" "C2'" sing N N 87 DC "C3'" "H3'" sing N N 88 DC "O3'" "HO3'" sing N N 89 DC "C2'" "C1'" sing N N 90 DC "C2'" "H2'" sing N N 91 DC "C2'" "H2''" sing N N 92 DC "C1'" N1 sing N N 93 DC "C1'" "H1'" sing N N 94 DC N1 C2 sing N N 95 DC N1 C6 sing N N 96 DC C2 O2 doub N N 97 DC C2 N3 sing N N 98 DC N3 C4 doub N N 99 DC C4 N4 sing N N 100 DC C4 C5 sing N N 101 DC N4 H41 sing N N 102 DC N4 H42 sing N N 103 DC C5 C6 doub N N 104 DC C5 H5 sing N N 105 DC C6 H6 sing N N 106 DG OP3 P sing N N 107 DG OP3 HOP3 sing N N 108 DG P OP1 doub N N 109 DG P OP2 sing N N 110 DG P "O5'" sing N N 111 DG OP2 HOP2 sing N N 112 DG "O5'" "C5'" sing N N 113 DG "C5'" "C4'" sing N N 114 DG "C5'" "H5'" sing N N 115 DG "C5'" "H5''" sing N N 116 DG "C4'" "O4'" sing N N 117 DG "C4'" "C3'" sing N N 118 DG "C4'" "H4'" sing N N 119 DG "O4'" "C1'" sing N N 120 DG "C3'" "O3'" sing N N 121 DG "C3'" "C2'" sing N N 122 DG "C3'" "H3'" sing N N 123 DG "O3'" "HO3'" sing N N 124 DG "C2'" "C1'" sing N N 125 DG "C2'" "H2'" sing N N 126 DG "C2'" "H2''" sing N N 127 DG "C1'" N9 sing N N 128 DG "C1'" "H1'" sing N N 129 DG N9 C8 sing Y N 130 DG N9 C4 sing Y N 131 DG C8 N7 doub Y N 132 DG C8 H8 sing N N 133 DG N7 C5 sing Y N 134 DG C5 C6 sing N N 135 DG C5 C4 doub Y N 136 DG C6 O6 doub N N 137 DG C6 N1 sing N N 138 DG N1 C2 sing N N 139 DG N1 H1 sing N N 140 DG C2 N2 sing N N 141 DG C2 N3 doub N N 142 DG N2 H21 sing N N 143 DG N2 H22 sing N N 144 DG N3 C4 sing N N 145 DGP P OP1 doub N N 146 DGP P OP2 sing N N 147 DGP P OP3 sing N N 148 DGP P "O5'" sing N N 149 DGP OP2 HOP2 sing N N 150 DGP OP3 HOP3 sing N N 151 DGP "O5'" "C5'" sing N N 152 DGP "C5'" "C4'" sing N N 153 DGP "C5'" "H5'" sing N N 154 DGP "C5'" "H5''" sing N N 155 DGP "C4'" "O4'" sing N N 156 DGP "C4'" "C3'" sing N N 157 DGP "C4'" "H4'" sing N N 158 DGP "O4'" "C1'" sing N N 159 DGP "C3'" "O3'" sing N N 160 DGP "C3'" "C2'" sing N N 161 DGP "C3'" "H3'" sing N N 162 DGP "O3'" "HO3'" sing N N 163 DGP "C2'" "C1'" sing N N 164 DGP "C2'" "H2'" sing N N 165 DGP "C2'" "H2''" sing N N 166 DGP "C1'" N9 sing N N 167 DGP "C1'" "H1'" sing N N 168 DGP N9 C8 sing Y N 169 DGP N9 C4 sing Y N 170 DGP C8 N7 doub Y N 171 DGP C8 H8 sing N N 172 DGP N7 C5 sing Y N 173 DGP C5 C6 sing N N 174 DGP C5 C4 doub Y N 175 DGP C6 O6 doub N N 176 DGP C6 N1 sing N N 177 DGP N1 C2 sing N N 178 DGP N1 HN1 sing N N 179 DGP C2 N2 sing N N 180 DGP C2 N3 doub N N 181 DGP N2 HN21 sing N N 182 DGP N2 HN22 sing N N 183 DGP N3 C4 sing N N 184 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6V0L 'double helix' 6V0L 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 3 1_555 A DG 14 1_555 -1.926 -3.272 -0.004 0.331 -2.126 88.232 1 X_DG3:DG14_X X 3 ? X 14 ? 6 3 1 A DG 11 1_555 A DG 15 1_555 1.395 3.523 0.550 -3.690 -13.474 -93.097 2 X_DG11:DG15_X X 11 ? X 15 ? 6 3 1 A DG 8 1_555 A DG 4 1_555 -1.508 -3.620 -0.003 -0.354 9.842 88.894 3 X_DG8:DG4_X X 8 ? X 4 ? 6 3 1 A DA 17 1_555 A DA 19 1_555 -6.620 -3.726 -1.301 -26.446 -24.688 -22.907 4 X_DA17:DA19_X X 17 ? X 19 ? ? ? 1 A DG 12 1_555 A DG 16 1_555 -1.953 3.229 -0.252 -0.193 -14.952 89.225 5 X_DG12:DG16_X X 12 ? X 16 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 3 1_555 A DG 14 1_555 A DG 11 1_555 A DG 15 1_555 0.766 2.063 3.336 0.782 1.548 -69.843 -1.858 0.697 3.288 -1.352 0.683 -69.862 1 XX_DG3DG11:DG15DG14_XX X 3 ? X 14 ? X 11 ? X 15 ? 1 A DG 11 1_555 A DG 15 1_555 A DG 8 1_555 A DG 4 1_555 -1.947 -3.314 -0.030 -10.159 0.930 179.718 -1.657 0.974 -0.030 0.465 5.079 179.719 2 XX_DG11DG8:DG4DG15_XX X 11 ? X 15 ? X 8 ? X 4 ? 1 A DA 17 1_555 A DA 19 1_555 A DG 12 1_555 A DG 16 1_555 -1.706 0.255 3.063 -8.889 -10.306 83.156 0.425 1.072 3.158 -7.719 6.658 84.061 3 XX_DA17DG12:DG16DA19_XX X 17 ? X 19 ? X 12 ? X 16 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Human Genome Research Institute (NIH/NHGRI)' 'United States' R01CA177585 1 'German Research Foundation (DFG)' Germany 427347592 2 # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 3D1 ? ? 3D1 ? ? 'SUBJECT OF INVESTIGATION' ? 2 DGP ? ? DGP ? ? 'SUBJECT OF INVESTIGATION' ? # _pdbx_nmr_spectrometer.spectrometer_id 2 _pdbx_nmr_spectrometer.model 'AVANCE III' _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.details ? # _atom_sites.entry_id 6V0L _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P # loop_