data_6V1F # _entry.id 6V1F # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6V1F pdb_00006v1f 10.2210/pdb6v1f/pdb WWPDB D_1000245593 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6V1F _pdbx_database_status.recvd_initial_deposition_date 2019-11-20 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Chan, A.' 1 0000-0001-6913-6764 'Karim, M.R.' 2 0000-0002-0424-127X 'Schonbrunn, E.' 3 0000-0002-3589-3510 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Med.Chem. _citation.journal_id_ASTM JMCMAR _citation.journal_id_CSD 0151 _citation.journal_id_ISSN 0022-2623 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 63 _citation.language ? _citation.page_first 3227 _citation.page_last 3237 _citation.title 'Structural Basis of Inhibitor Selectivity in the BRD7/9 Subfamily of Bromodomains.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acs.jmedchem.9b01980 _citation.pdbx_database_id_PubMed 32091206 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Karim, R.M.' 1 ? primary 'Chan, A.' 2 ? primary 'Zhu, J.Y.' 3 ? primary 'Schonbrunn, E.' 4 0000-0002-3589-3510 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6V1F _cell.details ? _cell.formula_units_Z ? _cell.length_a 71.490 _cell.length_a_esd ? _cell.length_b 108.710 _cell.length_b_esd ? _cell.length_c 36.650 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6V1F _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Bromodomain-containing protein 7' 14593.854 1 ? ? ? ? 2 non-polymer syn '4-[4-[(dimethylamino)methyl]-2,5-dimethoxy-phenyl]-2-methyl-2,7-naphthyridin-1-one' 353.415 1 ? ? ? ? 3 water nat water 18.015 29 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name '75 kDa bromodomain protein,Protein CELTIX-1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GAASEEVEQTPLQEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMC TNAMIYNKPETIYYKAAKKLLHSGMKILSQERIQSLKQSIDFMADL ; _entity_poly.pdbx_seq_one_letter_code_can ;GAASEEVEQTPLQEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMC TNAMIYNKPETIYYKAAKKLLHSGMKILSQERIQSLKQSIDFMADL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 ALA n 1 4 SER n 1 5 GLU n 1 6 GLU n 1 7 VAL n 1 8 GLU n 1 9 GLN n 1 10 THR n 1 11 PRO n 1 12 LEU n 1 13 GLN n 1 14 GLU n 1 15 ALA n 1 16 LEU n 1 17 ASN n 1 18 GLN n 1 19 LEU n 1 20 MET n 1 21 ARG n 1 22 GLN n 1 23 LEU n 1 24 GLN n 1 25 ARG n 1 26 LYS n 1 27 ASP n 1 28 PRO n 1 29 SER n 1 30 ALA n 1 31 PHE n 1 32 PHE n 1 33 SER n 1 34 PHE n 1 35 PRO n 1 36 VAL n 1 37 THR n 1 38 ASP n 1 39 PHE n 1 40 ILE n 1 41 ALA n 1 42 PRO n 1 43 GLY n 1 44 TYR n 1 45 SER n 1 46 MET n 1 47 ILE n 1 48 ILE n 1 49 LYS n 1 50 HIS n 1 51 PRO n 1 52 MET n 1 53 ASP n 1 54 PHE n 1 55 SER n 1 56 THR n 1 57 MET n 1 58 LYS n 1 59 GLU n 1 60 LYS n 1 61 ILE n 1 62 LYS n 1 63 ASN n 1 64 ASN n 1 65 ASP n 1 66 TYR n 1 67 GLN n 1 68 SER n 1 69 ILE n 1 70 GLU n 1 71 GLU n 1 72 LEU n 1 73 LYS n 1 74 ASP n 1 75 ASN n 1 76 PHE n 1 77 LYS n 1 78 LEU n 1 79 MET n 1 80 CYS n 1 81 THR n 1 82 ASN n 1 83 ALA n 1 84 MET n 1 85 ILE n 1 86 TYR n 1 87 ASN n 1 88 LYS n 1 89 PRO n 1 90 GLU n 1 91 THR n 1 92 ILE n 1 93 TYR n 1 94 TYR n 1 95 LYS n 1 96 ALA n 1 97 ALA n 1 98 LYS n 1 99 LYS n 1 100 LEU n 1 101 LEU n 1 102 HIS n 1 103 SER n 1 104 GLY n 1 105 MET n 1 106 LYS n 1 107 ILE n 1 108 LEU n 1 109 SER n 1 110 GLN n 1 111 GLU n 1 112 ARG n 1 113 ILE n 1 114 GLN n 1 115 SER n 1 116 LEU n 1 117 LYS n 1 118 GLN n 1 119 SER n 1 120 ILE n 1 121 ASP n 1 122 PHE n 1 123 MET n 1 124 ALA n 1 125 ASP n 1 126 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 126 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BRD7, BP75, CELTIX1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant RIPL _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BRD7_HUMAN _struct_ref.pdbx_db_accession Q9NPI1 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EEVEQTPLQEALNQLMRQLQRKDPSAFFSFPVTDFIAPGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAM IYNKPETIYYKAAKKLLHSGMKILSQERIQSLKQSIDFMADL ; _struct_ref.pdbx_align_begin 129 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6V1F _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 126 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9NPI1 _struct_ref_seq.db_align_beg 129 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 250 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 129 _struct_ref_seq.pdbx_auth_seq_align_end 250 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6V1F GLY A 1 ? UNP Q9NPI1 ? ? 'expression tag' 125 1 1 6V1F ALA A 2 ? UNP Q9NPI1 ? ? 'expression tag' 126 2 1 6V1F ALA A 3 ? UNP Q9NPI1 ? ? 'expression tag' 127 3 1 6V1F SER A 4 ? UNP Q9NPI1 ? ? 'expression tag' 128 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5U6 non-polymer . '4-[4-[(dimethylamino)methyl]-2,5-dimethoxy-phenyl]-2-methyl-2,7-naphthyridin-1-one' ? 'C20 H23 N3 O3' 353.415 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6V1F _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.44 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 49.59 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.05 M (NH4)2SO4, 0.1 M Bis-tris (pH 6.5), and 30 % Pentaerythritol ethoxylate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-10-20 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 30.060 _reflns.entry_id 6V1F _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.000 _reflns.d_resolution_low 32.322 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 10022 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.800 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.120 _reflns.pdbx_Rmerge_I_obs 0.042 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 28.830 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.980 _reflns.pdbx_scaling_rejects 23 _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.046 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 71354 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split 2.000 2.050 ? 6.460 ? 5381 740 ? 740 100.000 ? ? ? ? 0.308 ? ? ? ? ? ? ? ? 7.272 ? ? ? ? 0.332 ? ? 1 1 0.983 ? ? 2.050 2.110 ? 8.040 ? 5148 704 ? 702 99.700 ? ? ? ? 0.249 ? ? ? ? ? ? ? ? 7.333 ? ? ? ? 0.268 ? ? 2 1 0.988 ? ? 2.110 2.170 ? 9.790 ? 5095 702 ? 698 99.400 ? ? ? ? 0.206 ? ? ? ? ? ? ? ? 7.299 ? ? ? ? 0.222 ? ? 3 1 0.988 ? ? 2.170 2.240 ? 12.600 ? 4787 658 ? 657 99.800 ? ? ? ? 0.159 ? ? ? ? ? ? ? ? 7.286 ? ? ? ? 0.171 ? ? 4 1 0.993 ? ? 2.240 2.310 ? 14.410 ? 4740 650 ? 650 100.000 ? ? ? ? 0.141 ? ? ? ? ? ? ? ? 7.292 ? ? ? ? 0.152 ? ? 5 1 0.993 ? ? 2.310 2.390 ? 15.200 ? 4608 635 ? 634 99.800 ? ? ? ? 0.123 ? ? ? ? ? ? ? ? 7.268 ? ? ? ? 0.133 ? ? 6 1 0.995 ? ? 2.390 2.480 ? 19.000 ? 4351 600 ? 600 100.000 ? ? ? ? 0.101 ? ? ? ? ? ? ? ? 7.252 ? ? ? ? 0.109 ? ? 7 1 0.996 ? ? 2.480 2.580 ? 23.930 ? 4313 599 ? 597 99.700 ? ? ? ? 0.072 ? ? ? ? ? ? ? ? 7.224 ? ? ? ? 0.078 ? ? 8 1 0.998 ? ? 2.580 2.700 ? 27.260 ? 3953 553 ? 552 99.800 ? ? ? ? 0.060 ? ? ? ? ? ? ? ? 7.161 ? ? ? ? 0.065 ? ? 9 1 0.998 ? ? 2.700 2.830 ? 31.730 ? 3934 550 ? 550 100.000 ? ? ? ? 0.050 ? ? ? ? ? ? ? ? 7.153 ? ? ? ? 0.055 ? ? 10 1 0.999 ? ? 2.830 2.980 ? 34.610 ? 3692 523 ? 523 100.000 ? ? ? ? 0.047 ? ? ? ? ? ? ? ? 7.059 ? ? ? ? 0.051 ? ? 11 1 0.999 ? ? 2.980 3.160 ? 39.970 ? 3395 478 ? 477 99.800 ? ? ? ? 0.042 ? ? ? ? ? ? ? ? 7.117 ? ? ? ? 0.045 ? ? 12 1 0.999 ? ? 3.160 3.380 ? 47.850 ? 3339 472 ? 471 99.800 ? ? ? ? 0.035 ? ? ? ? ? ? ? ? 7.089 ? ? ? ? 0.038 ? ? 13 1 0.999 ? ? 3.380 3.650 ? 54.760 ? 3069 440 ? 440 100.000 ? ? ? ? 0.029 ? ? ? ? ? ? ? ? 6.975 ? ? ? ? 0.032 ? ? 14 1 0.999 ? ? 3.650 4.000 ? 58.010 ? 2755 393 ? 393 100.000 ? ? ? ? 0.027 ? ? ? ? ? ? ? ? 7.010 ? ? ? ? 0.029 ? ? 15 1 1.000 ? ? 4.000 4.470 ? 60.040 ? 2528 367 ? 367 100.000 ? ? ? ? 0.024 ? ? ? ? ? ? ? ? 6.888 ? ? ? ? 0.026 ? ? 16 1 0.999 ? ? 4.470 5.160 ? 59.520 ? 2229 329 ? 328 99.700 ? ? ? ? 0.024 ? ? ? ? ? ? ? ? 6.796 ? ? ? ? 0.026 ? ? 17 1 1.000 ? ? 5.160 6.320 ? 59.660 ? 1862 279 ? 279 100.000 ? ? ? ? 0.025 ? ? ? ? ? ? ? ? 6.674 ? ? ? ? 0.027 ? ? 18 1 0.999 ? ? 6.320 8.940 ? 61.150 ? 1458 230 ? 228 99.100 ? ? ? ? 0.029 ? ? ? ? ? ? ? ? 6.395 ? ? ? ? 0.031 ? ? 19 1 0.999 ? ? 8.940 32.322 ? 54.900 ? 717 140 ? 136 97.100 ? ? ? ? 0.028 ? ? ? ? ? ? ? ? 5.272 ? ? ? ? 0.032 ? ? 20 1 0.999 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 85.930 _refine.B_iso_mean 37.8650 _refine.B_iso_min 20.220 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6V1F _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.0000 _refine.ls_d_res_low 32.3220 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 10016 _refine.ls_number_reflns_R_free 500 _refine.ls_number_reflns_R_work 9516 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.7800 _refine.ls_percent_reflns_R_free 4.9900 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2187 _refine.ls_R_factor_R_free 0.2489 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2170 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.370 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 6PPA _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 27.9600 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1300 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id final _refine_hist.details ? _refine_hist.d_res_high 2.0000 _refine_hist.d_res_low 32.3220 _refine_hist.number_atoms_solvent 29 _refine_hist.number_atoms_total 1013 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total 117 _refine_hist.pdbx_B_iso_mean_ligand 43.63 _refine_hist.pdbx_B_iso_mean_solvent 37.32 _refine_hist.pdbx_number_atoms_protein 958 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 26 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.003 ? 1005 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.578 ? 1349 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.038 ? 141 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.006 ? 169 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 4.088 ? 621 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.0001 2.2013 . . 122 2335 100.0000 . . . 0.2332 0.0000 0.2227 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2013 2.5197 . . 123 2337 100.0000 . . . 0.2669 0.0000 0.2291 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.5197 3.1742 . . 125 2360 100.0000 . . . 0.2567 0.0000 0.2490 . . . . . . . . . . . 'X-RAY DIFFRACTION' 3.1742 32.3220 . . 130 2484 100.0000 . . . 0.2435 0.0000 0.1990 . . . . . . . . . . . # _struct.entry_id 6V1F _struct.title 'Crystal structure of the bromodomain of human BRD7 bound to BI9564' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6V1F _struct_keywords.text 'BRD7, non-BET, BRD9, BI9564, Gene regulation, BP75, CELTIX1' _struct_keywords.pdbx_keywords 'GENE REGULATION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 10 ? LYS A 26 ? THR A 134 LYS A 150 1 ? 17 HELX_P HELX_P2 AA2 GLY A 43 ? ILE A 48 ? GLY A 167 ILE A 172 1 ? 6 HELX_P HELX_P3 AA3 ASP A 53 ? ASN A 63 ? ASP A 177 ASN A 187 1 ? 11 HELX_P HELX_P4 AA4 SER A 68 ? ASN A 87 ? SER A 192 ASN A 211 1 ? 20 HELX_P HELX_P5 AA5 THR A 91 ? LEU A 108 ? THR A 215 LEU A 232 1 ? 18 HELX_P HELX_P6 AA6 SER A 109 ? MET A 123 ? SER A 233 MET A 247 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id 5U6 _struct_site.pdbx_auth_seq_id 301 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 12 _struct_site.details 'binding site for residue 5U6 A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 ALA A 30 ? ALA A 154 . ? 1_555 ? 2 AC1 12 PHE A 31 ? PHE A 155 . ? 1_555 ? 3 AC1 12 PHE A 32 ? PHE A 156 . ? 1_555 ? 4 AC1 12 PHE A 34 ? PHE A 158 . ? 1_555 ? 5 AC1 12 PRO A 35 ? PRO A 159 . ? 1_555 ? 6 AC1 12 PHE A 39 ? PHE A 163 . ? 4_557 ? 7 AC1 12 ILE A 40 ? ILE A 164 . ? 1_555 ? 8 AC1 12 ALA A 41 ? ALA A 165 . ? 1_555 ? 9 AC1 12 ASN A 87 ? ASN A 211 . ? 1_555 ? 10 AC1 12 TYR A 93 ? TYR A 217 . ? 1_555 ? 11 AC1 12 HOH C . ? HOH A 402 . ? 1_555 ? 12 AC1 12 HOH C . ? HOH A 423 . ? 1_555 ? # _atom_sites.entry_id 6V1F _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.013988 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009199 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.027285 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 125 ? ? ? A . n A 1 2 ALA 2 126 ? ? ? A . n A 1 3 ALA 3 127 ? ? ? A . n A 1 4 SER 4 128 ? ? ? A . n A 1 5 GLU 5 129 ? ? ? A . n A 1 6 GLU 6 130 ? ? ? A . n A 1 7 VAL 7 131 ? ? ? A . n A 1 8 GLU 8 132 132 GLU GLU A . n A 1 9 GLN 9 133 133 GLN GLN A . n A 1 10 THR 10 134 134 THR THR A . n A 1 11 PRO 11 135 135 PRO PRO A . n A 1 12 LEU 12 136 136 LEU LEU A . n A 1 13 GLN 13 137 137 GLN GLN A . n A 1 14 GLU 14 138 138 GLU GLU A . n A 1 15 ALA 15 139 139 ALA ALA A . n A 1 16 LEU 16 140 140 LEU LEU A . n A 1 17 ASN 17 141 141 ASN ASN A . n A 1 18 GLN 18 142 142 GLN GLN A . n A 1 19 LEU 19 143 143 LEU LEU A . n A 1 20 MET 20 144 144 MET MET A . n A 1 21 ARG 21 145 145 ARG ARG A . n A 1 22 GLN 22 146 146 GLN GLN A . n A 1 23 LEU 23 147 147 LEU LEU A . n A 1 24 GLN 24 148 148 GLN GLN A . n A 1 25 ARG 25 149 149 ARG ARG A . n A 1 26 LYS 26 150 150 LYS LYS A . n A 1 27 ASP 27 151 151 ASP ASP A . n A 1 28 PRO 28 152 152 PRO PRO A . n A 1 29 SER 29 153 153 SER SER A . n A 1 30 ALA 30 154 154 ALA ALA A . n A 1 31 PHE 31 155 155 PHE PHE A . n A 1 32 PHE 32 156 156 PHE PHE A . n A 1 33 SER 33 157 157 SER SER A . n A 1 34 PHE 34 158 158 PHE PHE A . n A 1 35 PRO 35 159 159 PRO PRO A . n A 1 36 VAL 36 160 160 VAL VAL A . n A 1 37 THR 37 161 161 THR THR A . n A 1 38 ASP 38 162 162 ASP ASP A . n A 1 39 PHE 39 163 163 PHE PHE A . n A 1 40 ILE 40 164 164 ILE ILE A . n A 1 41 ALA 41 165 165 ALA ALA A . n A 1 42 PRO 42 166 166 PRO PRO A . n A 1 43 GLY 43 167 167 GLY GLY A . n A 1 44 TYR 44 168 168 TYR TYR A . n A 1 45 SER 45 169 169 SER SER A . n A 1 46 MET 46 170 170 MET MET A . n A 1 47 ILE 47 171 171 ILE ILE A . n A 1 48 ILE 48 172 172 ILE ILE A . n A 1 49 LYS 49 173 173 LYS LYS A . n A 1 50 HIS 50 174 174 HIS HIS A . n A 1 51 PRO 51 175 175 PRO PRO A . n A 1 52 MET 52 176 176 MET MET A . n A 1 53 ASP 53 177 177 ASP ASP A . n A 1 54 PHE 54 178 178 PHE PHE A . n A 1 55 SER 55 179 179 SER SER A . n A 1 56 THR 56 180 180 THR THR A . n A 1 57 MET 57 181 181 MET MET A . n A 1 58 LYS 58 182 182 LYS LYS A . n A 1 59 GLU 59 183 183 GLU GLU A . n A 1 60 LYS 60 184 184 LYS LYS A . n A 1 61 ILE 61 185 185 ILE ILE A . n A 1 62 LYS 62 186 186 LYS LYS A . n A 1 63 ASN 63 187 187 ASN ASN A . n A 1 64 ASN 64 188 188 ASN ASN A . n A 1 65 ASP 65 189 189 ASP ASP A . n A 1 66 TYR 66 190 190 TYR TYR A . n A 1 67 GLN 67 191 191 GLN GLN A . n A 1 68 SER 68 192 192 SER SER A . n A 1 69 ILE 69 193 193 ILE ILE A . n A 1 70 GLU 70 194 194 GLU GLU A . n A 1 71 GLU 71 195 195 GLU GLU A . n A 1 72 LEU 72 196 196 LEU LEU A . n A 1 73 LYS 73 197 197 LYS LYS A . n A 1 74 ASP 74 198 198 ASP ASP A . n A 1 75 ASN 75 199 199 ASN ASN A . n A 1 76 PHE 76 200 200 PHE PHE A . n A 1 77 LYS 77 201 201 LYS LYS A . n A 1 78 LEU 78 202 202 LEU LEU A . n A 1 79 MET 79 203 203 MET MET A . n A 1 80 CYS 80 204 204 CYS CYS A . n A 1 81 THR 81 205 205 THR THR A . n A 1 82 ASN 82 206 206 ASN ASN A . n A 1 83 ALA 83 207 207 ALA ALA A . n A 1 84 MET 84 208 208 MET MET A . n A 1 85 ILE 85 209 209 ILE ILE A . n A 1 86 TYR 86 210 210 TYR TYR A . n A 1 87 ASN 87 211 211 ASN ASN A . n A 1 88 LYS 88 212 212 LYS LYS A . n A 1 89 PRO 89 213 213 PRO PRO A . n A 1 90 GLU 90 214 214 GLU GLU A . n A 1 91 THR 91 215 215 THR THR A . n A 1 92 ILE 92 216 216 ILE ILE A . n A 1 93 TYR 93 217 217 TYR TYR A . n A 1 94 TYR 94 218 218 TYR TYR A . n A 1 95 LYS 95 219 219 LYS LYS A . n A 1 96 ALA 96 220 220 ALA ALA A . n A 1 97 ALA 97 221 221 ALA ALA A . n A 1 98 LYS 98 222 222 LYS LYS A . n A 1 99 LYS 99 223 223 LYS LYS A . n A 1 100 LEU 100 224 224 LEU LEU A . n A 1 101 LEU 101 225 225 LEU LEU A . n A 1 102 HIS 102 226 226 HIS HIS A . n A 1 103 SER 103 227 227 SER SER A . n A 1 104 GLY 104 228 228 GLY GLY A . n A 1 105 MET 105 229 229 MET MET A . n A 1 106 LYS 106 230 230 LYS LYS A . n A 1 107 ILE 107 231 231 ILE ILE A . n A 1 108 LEU 108 232 232 LEU LEU A . n A 1 109 SER 109 233 233 SER SER A . n A 1 110 GLN 110 234 234 GLN GLN A . n A 1 111 GLU 111 235 235 GLU GLU A . n A 1 112 ARG 112 236 236 ARG ARG A . n A 1 113 ILE 113 237 237 ILE ILE A . n A 1 114 GLN 114 238 238 GLN GLN A . n A 1 115 SER 115 239 239 SER SER A . n A 1 116 LEU 116 240 240 LEU LEU A . n A 1 117 LYS 117 241 241 LYS LYS A . n A 1 118 GLN 118 242 242 GLN GLN A . n A 1 119 SER 119 243 243 SER SER A . n A 1 120 ILE 120 244 244 ILE ILE A . n A 1 121 ASP 121 245 245 ASP ASP A . n A 1 122 PHE 122 246 246 PHE PHE A . n A 1 123 MET 123 247 247 MET MET A . n A 1 124 ALA 124 248 248 ALA ALA A . n A 1 125 ASP 125 249 ? ? ? A . n A 1 126 LEU 126 250 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5U6 1 301 1 5U6 5U6 A . C 3 HOH 1 401 4 HOH HOH A . C 3 HOH 2 402 1 HOH HOH A . C 3 HOH 3 403 15 HOH HOH A . C 3 HOH 4 404 18 HOH HOH A . C 3 HOH 5 405 16 HOH HOH A . C 3 HOH 6 406 14 HOH HOH A . C 3 HOH 7 407 24 HOH HOH A . C 3 HOH 8 408 6 HOH HOH A . C 3 HOH 9 409 20 HOH HOH A . C 3 HOH 10 410 2 HOH HOH A . C 3 HOH 11 411 7 HOH HOH A . C 3 HOH 12 412 11 HOH HOH A . C 3 HOH 13 413 29 HOH HOH A . C 3 HOH 14 414 12 HOH HOH A . C 3 HOH 15 415 9 HOH HOH A . C 3 HOH 16 416 19 HOH HOH A . C 3 HOH 17 417 23 HOH HOH A . C 3 HOH 18 418 3 HOH HOH A . C 3 HOH 19 419 17 HOH HOH A . C 3 HOH 20 420 5 HOH HOH A . C 3 HOH 21 421 22 HOH HOH A . C 3 HOH 22 422 8 HOH HOH A . C 3 HOH 23 423 27 HOH HOH A . C 3 HOH 24 424 26 HOH HOH A . C 3 HOH 25 425 21 HOH HOH A . C 3 HOH 26 426 10 HOH HOH A . C 3 HOH 27 427 25 HOH HOH A . C 3 HOH 28 428 28 HOH HOH A . C 3 HOH 29 429 13 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 408 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-03-11 2 'Structure model' 1 1 2020-04-08 3 'Structure model' 1 2 2023-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 6 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.title' 5 2 'Structure model' '_citation_author.identifier_ORCID' 6 3 'Structure model' '_database_2.pdbx_DOI' 7 3 'Structure model' '_database_2.pdbx_database_accession' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 28.7126 15.8401 43.2190 0.3218 ? 0.0354 ? -0.1288 ? 0.5638 ? 0.0571 ? 0.1987 ? 3.9495 ? 2.7711 ? -2.3558 ? 2.7281 ? -0.4274 ? 3.3532 ? 0.2646 ? -0.5679 ? -0.6507 ? 0.0944 ? 0.0779 ? -0.4877 ? 0.5199 ? 0.0237 ? -0.1343 ? 2 'X-RAY DIFFRACTION' ? refined 11.0339 6.9811 37.6758 0.3595 ? -0.0165 ? -0.1732 ? 0.3402 ? 0.2057 ? 0.4884 ? 1.9402 ? 0.9469 ? -0.1961 ? 4.8176 ? 2.2397 ? 1.2634 ? 0.3222 ? -0.5340 ? -0.9379 ? 0.0048 ? 0.2630 ? 0.0462 ? 0.5780 ? -0.2999 ? -0.2802 ? 3 'X-RAY DIFFRACTION' ? refined 6.5514 8.3627 25.3085 0.5107 ? 0.0888 ? -0.3634 ? 0.3026 ? -0.0918 ? 0.4778 ? 4.6158 ? 1.4794 ? -1.3074 ? 3.3963 ? 1.8575 ? 2.1465 ? 0.2750 ? 0.5881 ? -1.0389 ? -1.3479 ? 0.4306 ? 0.4407 ? 0.4940 ? -0.3845 ? -0.4276 ? 4 'X-RAY DIFFRACTION' ? refined 20.5967 15.6870 32.5543 0.2713 ? 0.0352 ? -0.0251 ? 0.3103 ? -0.0277 ? 0.1566 ? 7.1557 ? 0.8962 ? 3.2056 ? 2.4191 ? 0.7341 ? 2.4577 ? -0.0265 ? 0.1506 ? -0.6748 ? -0.0965 ? 0.2510 ? -0.1954 ? 0.1622 ? 0.3745 ? -0.2118 ? 5 'X-RAY DIFFRACTION' ? refined 7.7474 20.2098 39.9431 0.2568 ? 0.0549 ? 0.0248 ? 0.5185 ? 0.0500 ? 0.1943 ? 5.4129 ? 0.7675 ? 0.9997 ? 4.8784 ? 0.1729 ? 3.5125 ? 0.0469 ? -0.9668 ? 0.0880 ? 0.3497 ? 0.2092 ? 0.5091 ? 0.0628 ? -0.3562 ? -0.3189 ? 6 'X-RAY DIFFRACTION' ? refined 33.0760 27.9777 41.3451 0.3415 ? -0.0416 ? -0.0407 ? 0.4221 ? 0.0113 ? 0.2004 ? 2.9022 ? 0.5053 ? -2.9804 ? 3.5593 ? 0.2059 ? 3.6324 ? 0.0608 ? -0.2131 ? 0.4366 ? 0.0599 ? -0.0921 ? 0.1504 ? -0.3577 ? -0.0839 ? 0.1432 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? A 132 ? ? A 150 ? ;chain 'A' and (resid 132 through 150 ) ; 2 'X-RAY DIFFRACTION' 2 ? ? A 151 ? ? A 165 ? ;chain 'A' and (resid 151 through 165 ) ; 3 'X-RAY DIFFRACTION' 3 ? ? A 166 ? ? A 171 ? ;chain 'A' and (resid 166 through 171 ) ; 4 'X-RAY DIFFRACTION' 4 ? ? A 172 ? ? A 210 ? ;chain 'A' and (resid 172 through 210 ) ; 5 'X-RAY DIFFRACTION' 5 ? ? A 211 ? ? A 231 ? ;chain 'A' and (resid 211 through 231 ) ; 6 'X-RAY DIFFRACTION' 6 ? ? A 232 ? ? A 248 ? ;chain 'A' and (resid 232 through 248 ) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.11.1-2575_3260 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.25 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _pdbx_entry_details.entry_id 6V1F _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LEU _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 232 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -86.93 _pdbx_validate_torsion.psi 38.85 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 125 ? A GLY 1 2 1 Y 1 A ALA 126 ? A ALA 2 3 1 Y 1 A ALA 127 ? A ALA 3 4 1 Y 1 A SER 128 ? A SER 4 5 1 Y 1 A GLU 129 ? A GLU 5 6 1 Y 1 A GLU 130 ? A GLU 6 7 1 Y 1 A VAL 131 ? A VAL 7 8 1 Y 1 A ASP 249 ? A ASP 125 9 1 Y 1 A LEU 250 ? A LEU 126 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5U6 N3 N Y N 1 5U6 C4 C Y N 2 5U6 C5 C Y N 3 5U6 C6 C Y N 4 5U6 C7 C N N 5 5U6 C10 C N N 6 5U6 C13 C Y N 7 5U6 C17 C Y N 8 5U6 C20 C Y N 9 5U6 C21 C Y N 10 5U6 C24 C N N 11 5U6 C26 C N N 12 5U6 C18 C Y N 13 5U6 C1 C Y N 14 5U6 N8 N N N 15 5U6 C2 C Y N 16 5U6 C16 C N N 17 5U6 O25 O N N 18 5U6 C9 C N N 19 5U6 C12 C N N 20 5U6 C19 C Y N 21 5U6 C14 C N N 22 5U6 O22 O N N 23 5U6 N15 N N N 24 5U6 O11 O N N 25 5U6 C23 C N N 26 5U6 H1 H N N 27 5U6 H2 H N N 28 5U6 H3 H N N 29 5U6 H4 H N N 30 5U6 H5 H N N 31 5U6 H6 H N N 32 5U6 H7 H N N 33 5U6 H8 H N N 34 5U6 H9 H N N 35 5U6 H10 H N N 36 5U6 H11 H N N 37 5U6 H12 H N N 38 5U6 H13 H N N 39 5U6 H14 H N N 40 5U6 H15 H N N 41 5U6 H16 H N N 42 5U6 H17 H N N 43 5U6 H18 H N N 44 5U6 H19 H N N 45 5U6 H20 H N N 46 5U6 H22 H N N 47 5U6 H23 H N N 48 5U6 H24 H N N 49 ALA N N N N 50 ALA CA C N S 51 ALA C C N N 52 ALA O O N N 53 ALA CB C N N 54 ALA OXT O N N 55 ALA H H N N 56 ALA H2 H N N 57 ALA HA H N N 58 ALA HB1 H N N 59 ALA HB2 H N N 60 ALA HB3 H N N 61 ALA HXT H N N 62 ARG N N N N 63 ARG CA C N S 64 ARG C C N N 65 ARG O O N N 66 ARG CB C N N 67 ARG CG C N N 68 ARG CD C N N 69 ARG NE N N N 70 ARG CZ C N N 71 ARG NH1 N N N 72 ARG NH2 N N N 73 ARG OXT O N N 74 ARG H H N N 75 ARG H2 H N N 76 ARG HA H N N 77 ARG HB2 H N N 78 ARG HB3 H N N 79 ARG HG2 H N N 80 ARG HG3 H N N 81 ARG HD2 H N N 82 ARG HD3 H N N 83 ARG HE H N N 84 ARG HH11 H N N 85 ARG HH12 H N N 86 ARG HH21 H N N 87 ARG HH22 H N N 88 ARG HXT H N N 89 ASN N N N N 90 ASN CA C N S 91 ASN C C N N 92 ASN O O N N 93 ASN CB C N N 94 ASN CG C N N 95 ASN OD1 O N N 96 ASN ND2 N N N 97 ASN OXT O N N 98 ASN H H N N 99 ASN H2 H N N 100 ASN HA H N N 101 ASN HB2 H N N 102 ASN HB3 H N N 103 ASN HD21 H N N 104 ASN HD22 H N N 105 ASN HXT H N N 106 ASP N N N N 107 ASP CA C N S 108 ASP C C N N 109 ASP O O N N 110 ASP CB C N N 111 ASP CG C N N 112 ASP OD1 O N N 113 ASP OD2 O N N 114 ASP OXT O N N 115 ASP H H N N 116 ASP H2 H N N 117 ASP HA H N N 118 ASP HB2 H N N 119 ASP HB3 H N N 120 ASP HD2 H N N 121 ASP HXT H N N 122 CYS N N N N 123 CYS CA C N R 124 CYS C C N N 125 CYS O O N N 126 CYS CB C N N 127 CYS SG S N N 128 CYS OXT O N N 129 CYS H H N N 130 CYS H2 H N N 131 CYS HA H N N 132 CYS HB2 H N N 133 CYS HB3 H N N 134 CYS HG H N N 135 CYS HXT H N N 136 GLN N N N N 137 GLN CA C N S 138 GLN C C N N 139 GLN O O N N 140 GLN CB C N N 141 GLN CG C N N 142 GLN CD C N N 143 GLN OE1 O N N 144 GLN NE2 N N N 145 GLN OXT O N N 146 GLN H H N N 147 GLN H2 H N N 148 GLN HA H N N 149 GLN HB2 H N N 150 GLN HB3 H N N 151 GLN HG2 H N N 152 GLN HG3 H N N 153 GLN HE21 H N N 154 GLN HE22 H N N 155 GLN HXT H N N 156 GLU N N N N 157 GLU CA C N S 158 GLU C C N N 159 GLU O O N N 160 GLU CB C N N 161 GLU CG C N N 162 GLU CD C N N 163 GLU OE1 O N N 164 GLU OE2 O N N 165 GLU OXT O N N 166 GLU H H N N 167 GLU H2 H N N 168 GLU HA H N N 169 GLU HB2 H N N 170 GLU HB3 H N N 171 GLU HG2 H N N 172 GLU HG3 H N N 173 GLU HE2 H N N 174 GLU HXT H N N 175 GLY N N N N 176 GLY CA C N N 177 GLY C C N N 178 GLY O O N N 179 GLY OXT O N N 180 GLY H H N N 181 GLY H2 H N N 182 GLY HA2 H N N 183 GLY HA3 H N N 184 GLY HXT H N N 185 HIS N N N N 186 HIS CA C N S 187 HIS C C N N 188 HIS O O N N 189 HIS CB C N N 190 HIS CG C Y N 191 HIS ND1 N Y N 192 HIS CD2 C Y N 193 HIS CE1 C Y N 194 HIS NE2 N Y N 195 HIS OXT O N N 196 HIS H H N N 197 HIS H2 H N N 198 HIS HA H N N 199 HIS HB2 H N N 200 HIS HB3 H N N 201 HIS HD1 H N N 202 HIS HD2 H N N 203 HIS HE1 H N N 204 HIS HE2 H N N 205 HIS HXT H N N 206 HOH O O N N 207 HOH H1 H N N 208 HOH H2 H N N 209 ILE N N N N 210 ILE CA C N S 211 ILE C C N N 212 ILE O O N N 213 ILE CB C N S 214 ILE CG1 C N N 215 ILE CG2 C N N 216 ILE CD1 C N N 217 ILE OXT O N N 218 ILE H H N N 219 ILE H2 H N N 220 ILE HA H N N 221 ILE HB H N N 222 ILE HG12 H N N 223 ILE HG13 H N N 224 ILE HG21 H N N 225 ILE HG22 H N N 226 ILE HG23 H N N 227 ILE HD11 H N N 228 ILE HD12 H N N 229 ILE HD13 H N N 230 ILE HXT H N N 231 LEU N N N N 232 LEU CA C N S 233 LEU C C N N 234 LEU O O N N 235 LEU CB C N N 236 LEU CG C N N 237 LEU CD1 C N N 238 LEU CD2 C N N 239 LEU OXT O N N 240 LEU H H N N 241 LEU H2 H N N 242 LEU HA H N N 243 LEU HB2 H N N 244 LEU HB3 H N N 245 LEU HG H N N 246 LEU HD11 H N N 247 LEU HD12 H N N 248 LEU HD13 H N N 249 LEU HD21 H N N 250 LEU HD22 H N N 251 LEU HD23 H N N 252 LEU HXT H N N 253 LYS N N N N 254 LYS CA C N S 255 LYS C C N N 256 LYS O O N N 257 LYS CB C N N 258 LYS CG C N N 259 LYS CD C N N 260 LYS CE C N N 261 LYS NZ N N N 262 LYS OXT O N N 263 LYS H H N N 264 LYS H2 H N N 265 LYS HA H N N 266 LYS HB2 H N N 267 LYS HB3 H N N 268 LYS HG2 H N N 269 LYS HG3 H N N 270 LYS HD2 H N N 271 LYS HD3 H N N 272 LYS HE2 H N N 273 LYS HE3 H N N 274 LYS HZ1 H N N 275 LYS HZ2 H N N 276 LYS HZ3 H N N 277 LYS HXT H N N 278 MET N N N N 279 MET CA C N S 280 MET C C N N 281 MET O O N N 282 MET CB C N N 283 MET CG C N N 284 MET SD S N N 285 MET CE C N N 286 MET OXT O N N 287 MET H H N N 288 MET H2 H N N 289 MET HA H N N 290 MET HB2 H N N 291 MET HB3 H N N 292 MET HG2 H N N 293 MET HG3 H N N 294 MET HE1 H N N 295 MET HE2 H N N 296 MET HE3 H N N 297 MET HXT H N N 298 PHE N N N N 299 PHE CA C N S 300 PHE C C N N 301 PHE O O N N 302 PHE CB C N N 303 PHE CG C Y N 304 PHE CD1 C Y N 305 PHE CD2 C Y N 306 PHE CE1 C Y N 307 PHE CE2 C Y N 308 PHE CZ C Y N 309 PHE OXT O N N 310 PHE H H N N 311 PHE H2 H N N 312 PHE HA H N N 313 PHE HB2 H N N 314 PHE HB3 H N N 315 PHE HD1 H N N 316 PHE HD2 H N N 317 PHE HE1 H N N 318 PHE HE2 H N N 319 PHE HZ H N N 320 PHE HXT H N N 321 PRO N N N N 322 PRO CA C N S 323 PRO C C N N 324 PRO O O N N 325 PRO CB C N N 326 PRO CG C N N 327 PRO CD C N N 328 PRO OXT O N N 329 PRO H H N N 330 PRO HA H N N 331 PRO HB2 H N N 332 PRO HB3 H N N 333 PRO HG2 H N N 334 PRO HG3 H N N 335 PRO HD2 H N N 336 PRO HD3 H N N 337 PRO HXT H N N 338 SER N N N N 339 SER CA C N S 340 SER C C N N 341 SER O O N N 342 SER CB C N N 343 SER OG O N N 344 SER OXT O N N 345 SER H H N N 346 SER H2 H N N 347 SER HA H N N 348 SER HB2 H N N 349 SER HB3 H N N 350 SER HG H N N 351 SER HXT H N N 352 THR N N N N 353 THR CA C N S 354 THR C C N N 355 THR O O N N 356 THR CB C N R 357 THR OG1 O N N 358 THR CG2 C N N 359 THR OXT O N N 360 THR H H N N 361 THR H2 H N N 362 THR HA H N N 363 THR HB H N N 364 THR HG1 H N N 365 THR HG21 H N N 366 THR HG22 H N N 367 THR HG23 H N N 368 THR HXT H N N 369 TYR N N N N 370 TYR CA C N S 371 TYR C C N N 372 TYR O O N N 373 TYR CB C N N 374 TYR CG C Y N 375 TYR CD1 C Y N 376 TYR CD2 C Y N 377 TYR CE1 C Y N 378 TYR CE2 C Y N 379 TYR CZ C Y N 380 TYR OH O N N 381 TYR OXT O N N 382 TYR H H N N 383 TYR H2 H N N 384 TYR HA H N N 385 TYR HB2 H N N 386 TYR HB3 H N N 387 TYR HD1 H N N 388 TYR HD2 H N N 389 TYR HE1 H N N 390 TYR HE2 H N N 391 TYR HH H N N 392 TYR HXT H N N 393 VAL N N N N 394 VAL CA C N S 395 VAL C C N N 396 VAL O O N N 397 VAL CB C N N 398 VAL CG1 C N N 399 VAL CG2 C N N 400 VAL OXT O N N 401 VAL H H N N 402 VAL H2 H N N 403 VAL HA H N N 404 VAL HB H N N 405 VAL HG11 H N N 406 VAL HG12 H N N 407 VAL HG13 H N N 408 VAL HG21 H N N 409 VAL HG22 H N N 410 VAL HG23 H N N 411 VAL HXT H N N 412 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5U6 C26 O25 sing N N 1 5U6 O25 C17 sing N N 2 5U6 C13 C17 doub Y N 3 5U6 C13 C21 sing Y N 4 5U6 C17 C18 sing Y N 5 5U6 C14 C21 sing N N 6 5U6 C14 N15 sing N N 7 5U6 C21 C20 doub Y N 8 5U6 C16 N15 sing N N 9 5U6 C18 C10 sing N N 10 5U6 C18 C19 doub Y N 11 5U6 N15 C24 sing N N 12 5U6 C1 C5 doub Y N 13 5U6 C1 C2 sing Y N 14 5U6 C10 C5 sing N N 15 5U6 C10 C9 doub N N 16 5U6 C20 C19 sing Y N 17 5U6 C20 O22 sing N N 18 5U6 C5 C6 sing Y N 19 5U6 C2 N3 doub Y N 20 5U6 C9 N8 sing N N 21 5U6 C6 C4 doub Y N 22 5U6 C6 C7 sing N N 23 5U6 N3 C4 sing Y N 24 5U6 N8 C7 sing N N 25 5U6 N8 C12 sing N N 26 5U6 C7 O11 doub N N 27 5U6 O22 C23 sing N N 28 5U6 C4 H1 sing N N 29 5U6 C13 H2 sing N N 30 5U6 C24 H3 sing N N 31 5U6 C24 H4 sing N N 32 5U6 C24 H5 sing N N 33 5U6 C26 H6 sing N N 34 5U6 C26 H7 sing N N 35 5U6 C26 H8 sing N N 36 5U6 C1 H9 sing N N 37 5U6 C2 H10 sing N N 38 5U6 C16 H11 sing N N 39 5U6 C16 H12 sing N N 40 5U6 C16 H13 sing N N 41 5U6 C9 H14 sing N N 42 5U6 C12 H15 sing N N 43 5U6 C12 H16 sing N N 44 5U6 C12 H17 sing N N 45 5U6 C19 H18 sing N N 46 5U6 C14 H19 sing N N 47 5U6 C14 H20 sing N N 48 5U6 C23 H22 sing N N 49 5U6 C23 H23 sing N N 50 5U6 C23 H24 sing N N 51 ALA N CA sing N N 52 ALA N H sing N N 53 ALA N H2 sing N N 54 ALA CA C sing N N 55 ALA CA CB sing N N 56 ALA CA HA sing N N 57 ALA C O doub N N 58 ALA C OXT sing N N 59 ALA CB HB1 sing N N 60 ALA CB HB2 sing N N 61 ALA CB HB3 sing N N 62 ALA OXT HXT sing N N 63 ARG N CA sing N N 64 ARG N H sing N N 65 ARG N H2 sing N N 66 ARG CA C sing N N 67 ARG CA CB sing N N 68 ARG CA HA sing N N 69 ARG C O doub N N 70 ARG C OXT sing N N 71 ARG CB CG sing N N 72 ARG CB HB2 sing N N 73 ARG CB HB3 sing N N 74 ARG CG CD sing N N 75 ARG CG HG2 sing N N 76 ARG CG HG3 sing N N 77 ARG CD NE sing N N 78 ARG CD HD2 sing N N 79 ARG CD HD3 sing N N 80 ARG NE CZ sing N N 81 ARG NE HE sing N N 82 ARG CZ NH1 sing N N 83 ARG CZ NH2 doub N N 84 ARG NH1 HH11 sing N N 85 ARG NH1 HH12 sing N N 86 ARG NH2 HH21 sing N N 87 ARG NH2 HH22 sing N N 88 ARG OXT HXT sing N N 89 ASN N CA sing N N 90 ASN N H sing N N 91 ASN N H2 sing N N 92 ASN CA C sing N N 93 ASN CA CB sing N N 94 ASN CA HA sing N N 95 ASN C O doub N N 96 ASN C OXT sing N N 97 ASN CB CG sing N N 98 ASN CB HB2 sing N N 99 ASN CB HB3 sing N N 100 ASN CG OD1 doub N N 101 ASN CG ND2 sing N N 102 ASN ND2 HD21 sing N N 103 ASN ND2 HD22 sing N N 104 ASN OXT HXT sing N N 105 ASP N CA sing N N 106 ASP N H sing N N 107 ASP N H2 sing N N 108 ASP CA C sing N N 109 ASP CA CB sing N N 110 ASP CA HA sing N N 111 ASP C O doub N N 112 ASP C OXT sing N N 113 ASP CB CG sing N N 114 ASP CB HB2 sing N N 115 ASP CB HB3 sing N N 116 ASP CG OD1 doub N N 117 ASP CG OD2 sing N N 118 ASP OD2 HD2 sing N N 119 ASP OXT HXT sing N N 120 CYS N CA sing N N 121 CYS N H sing N N 122 CYS N H2 sing N N 123 CYS CA C sing N N 124 CYS CA CB sing N N 125 CYS CA HA sing N N 126 CYS C O doub N N 127 CYS C OXT sing N N 128 CYS CB SG sing N N 129 CYS CB HB2 sing N N 130 CYS CB HB3 sing N N 131 CYS SG HG sing N N 132 CYS OXT HXT sing N N 133 GLN N CA sing N N 134 GLN N H sing N N 135 GLN N H2 sing N N 136 GLN CA C sing N N 137 GLN CA CB sing N N 138 GLN CA HA sing N N 139 GLN C O doub N N 140 GLN C OXT sing N N 141 GLN CB CG sing N N 142 GLN CB HB2 sing N N 143 GLN CB HB3 sing N N 144 GLN CG CD sing N N 145 GLN CG HG2 sing N N 146 GLN CG HG3 sing N N 147 GLN CD OE1 doub N N 148 GLN CD NE2 sing N N 149 GLN NE2 HE21 sing N N 150 GLN NE2 HE22 sing N N 151 GLN OXT HXT sing N N 152 GLU N CA sing N N 153 GLU N H sing N N 154 GLU N H2 sing N N 155 GLU CA C sing N N 156 GLU CA CB sing N N 157 GLU CA HA sing N N 158 GLU C O doub N N 159 GLU C OXT sing N N 160 GLU CB CG sing N N 161 GLU CB HB2 sing N N 162 GLU CB HB3 sing N N 163 GLU CG CD sing N N 164 GLU CG HG2 sing N N 165 GLU CG HG3 sing N N 166 GLU CD OE1 doub N N 167 GLU CD OE2 sing N N 168 GLU OE2 HE2 sing N N 169 GLU OXT HXT sing N N 170 GLY N CA sing N N 171 GLY N H sing N N 172 GLY N H2 sing N N 173 GLY CA C sing N N 174 GLY CA HA2 sing N N 175 GLY CA HA3 sing N N 176 GLY C O doub N N 177 GLY C OXT sing N N 178 GLY OXT HXT sing N N 179 HIS N CA sing N N 180 HIS N H sing N N 181 HIS N H2 sing N N 182 HIS CA C sing N N 183 HIS CA CB sing N N 184 HIS CA HA sing N N 185 HIS C O doub N N 186 HIS C OXT sing N N 187 HIS CB CG sing N N 188 HIS CB HB2 sing N N 189 HIS CB HB3 sing N N 190 HIS CG ND1 sing Y N 191 HIS CG CD2 doub Y N 192 HIS ND1 CE1 doub Y N 193 HIS ND1 HD1 sing N N 194 HIS CD2 NE2 sing Y N 195 HIS CD2 HD2 sing N N 196 HIS CE1 NE2 sing Y N 197 HIS CE1 HE1 sing N N 198 HIS NE2 HE2 sing N N 199 HIS OXT HXT sing N N 200 HOH O H1 sing N N 201 HOH O H2 sing N N 202 ILE N CA sing N N 203 ILE N H sing N N 204 ILE N H2 sing N N 205 ILE CA C sing N N 206 ILE CA CB sing N N 207 ILE CA HA sing N N 208 ILE C O doub N N 209 ILE C OXT sing N N 210 ILE CB CG1 sing N N 211 ILE CB CG2 sing N N 212 ILE CB HB sing N N 213 ILE CG1 CD1 sing N N 214 ILE CG1 HG12 sing N N 215 ILE CG1 HG13 sing N N 216 ILE CG2 HG21 sing N N 217 ILE CG2 HG22 sing N N 218 ILE CG2 HG23 sing N N 219 ILE CD1 HD11 sing N N 220 ILE CD1 HD12 sing N N 221 ILE CD1 HD13 sing N N 222 ILE OXT HXT sing N N 223 LEU N CA sing N N 224 LEU N H sing N N 225 LEU N H2 sing N N 226 LEU CA C sing N N 227 LEU CA CB sing N N 228 LEU CA HA sing N N 229 LEU C O doub N N 230 LEU C OXT sing N N 231 LEU CB CG sing N N 232 LEU CB HB2 sing N N 233 LEU CB HB3 sing N N 234 LEU CG CD1 sing N N 235 LEU CG CD2 sing N N 236 LEU CG HG sing N N 237 LEU CD1 HD11 sing N N 238 LEU CD1 HD12 sing N N 239 LEU CD1 HD13 sing N N 240 LEU CD2 HD21 sing N N 241 LEU CD2 HD22 sing N N 242 LEU CD2 HD23 sing N N 243 LEU OXT HXT sing N N 244 LYS N CA sing N N 245 LYS N H sing N N 246 LYS N H2 sing N N 247 LYS CA C sing N N 248 LYS CA CB sing N N 249 LYS CA HA sing N N 250 LYS C O doub N N 251 LYS C OXT sing N N 252 LYS CB CG sing N N 253 LYS CB HB2 sing N N 254 LYS CB HB3 sing N N 255 LYS CG CD sing N N 256 LYS CG HG2 sing N N 257 LYS CG HG3 sing N N 258 LYS CD CE sing N N 259 LYS CD HD2 sing N N 260 LYS CD HD3 sing N N 261 LYS CE NZ sing N N 262 LYS CE HE2 sing N N 263 LYS CE HE3 sing N N 264 LYS NZ HZ1 sing N N 265 LYS NZ HZ2 sing N N 266 LYS NZ HZ3 sing N N 267 LYS OXT HXT sing N N 268 MET N CA sing N N 269 MET N H sing N N 270 MET N H2 sing N N 271 MET CA C sing N N 272 MET CA CB sing N N 273 MET CA HA sing N N 274 MET C O doub N N 275 MET C OXT sing N N 276 MET CB CG sing N N 277 MET CB HB2 sing N N 278 MET CB HB3 sing N N 279 MET CG SD sing N N 280 MET CG HG2 sing N N 281 MET CG HG3 sing N N 282 MET SD CE sing N N 283 MET CE HE1 sing N N 284 MET CE HE2 sing N N 285 MET CE HE3 sing N N 286 MET OXT HXT sing N N 287 PHE N CA sing N N 288 PHE N H sing N N 289 PHE N H2 sing N N 290 PHE CA C sing N N 291 PHE CA CB sing N N 292 PHE CA HA sing N N 293 PHE C O doub N N 294 PHE C OXT sing N N 295 PHE CB CG sing N N 296 PHE CB HB2 sing N N 297 PHE CB HB3 sing N N 298 PHE CG CD1 doub Y N 299 PHE CG CD2 sing Y N 300 PHE CD1 CE1 sing Y N 301 PHE CD1 HD1 sing N N 302 PHE CD2 CE2 doub Y N 303 PHE CD2 HD2 sing N N 304 PHE CE1 CZ doub Y N 305 PHE CE1 HE1 sing N N 306 PHE CE2 CZ sing Y N 307 PHE CE2 HE2 sing N N 308 PHE CZ HZ sing N N 309 PHE OXT HXT sing N N 310 PRO N CA sing N N 311 PRO N CD sing N N 312 PRO N H sing N N 313 PRO CA C sing N N 314 PRO CA CB sing N N 315 PRO CA HA sing N N 316 PRO C O doub N N 317 PRO C OXT sing N N 318 PRO CB CG sing N N 319 PRO CB HB2 sing N N 320 PRO CB HB3 sing N N 321 PRO CG CD sing N N 322 PRO CG HG2 sing N N 323 PRO CG HG3 sing N N 324 PRO CD HD2 sing N N 325 PRO CD HD3 sing N N 326 PRO OXT HXT sing N N 327 SER N CA sing N N 328 SER N H sing N N 329 SER N H2 sing N N 330 SER CA C sing N N 331 SER CA CB sing N N 332 SER CA HA sing N N 333 SER C O doub N N 334 SER C OXT sing N N 335 SER CB OG sing N N 336 SER CB HB2 sing N N 337 SER CB HB3 sing N N 338 SER OG HG sing N N 339 SER OXT HXT sing N N 340 THR N CA sing N N 341 THR N H sing N N 342 THR N H2 sing N N 343 THR CA C sing N N 344 THR CA CB sing N N 345 THR CA HA sing N N 346 THR C O doub N N 347 THR C OXT sing N N 348 THR CB OG1 sing N N 349 THR CB CG2 sing N N 350 THR CB HB sing N N 351 THR OG1 HG1 sing N N 352 THR CG2 HG21 sing N N 353 THR CG2 HG22 sing N N 354 THR CG2 HG23 sing N N 355 THR OXT HXT sing N N 356 TYR N CA sing N N 357 TYR N H sing N N 358 TYR N H2 sing N N 359 TYR CA C sing N N 360 TYR CA CB sing N N 361 TYR CA HA sing N N 362 TYR C O doub N N 363 TYR C OXT sing N N 364 TYR CB CG sing N N 365 TYR CB HB2 sing N N 366 TYR CB HB3 sing N N 367 TYR CG CD1 doub Y N 368 TYR CG CD2 sing Y N 369 TYR CD1 CE1 sing Y N 370 TYR CD1 HD1 sing N N 371 TYR CD2 CE2 doub Y N 372 TYR CD2 HD2 sing N N 373 TYR CE1 CZ doub Y N 374 TYR CE1 HE1 sing N N 375 TYR CE2 CZ sing Y N 376 TYR CE2 HE2 sing N N 377 TYR CZ OH sing N N 378 TYR OH HH sing N N 379 TYR OXT HXT sing N N 380 VAL N CA sing N N 381 VAL N H sing N N 382 VAL N H2 sing N N 383 VAL CA C sing N N 384 VAL CA CB sing N N 385 VAL CA HA sing N N 386 VAL C O doub N N 387 VAL C OXT sing N N 388 VAL CB CG1 sing N N 389 VAL CB CG2 sing N N 390 VAL CB HB sing N N 391 VAL CG1 HG11 sing N N 392 VAL CG1 HG12 sing N N 393 VAL CG1 HG13 sing N N 394 VAL CG2 HG21 sing N N 395 VAL CG2 HG22 sing N N 396 VAL CG2 HG23 sing N N 397 VAL OXT HXT sing N N 398 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id 5U6 _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id 5U6 _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '4-[4-[(dimethylamino)methyl]-2,5-dimethoxy-phenyl]-2-methyl-2,7-naphthyridin-1-one' 5U6 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 6PPA _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #