data_6V1N # _entry.id 6V1N # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.321 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6V1N WWPDB D_1000245599 BMRB 30690 # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'CSP1-E1A-cyc(Dap6E10)' _pdbx_database_related.db_id 30690 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6V1N _pdbx_database_status.recvd_initial_deposition_date 2019-11-20 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _audit_author.name 'Yang, Y.' _audit_author.pdbx_ordinal 1 _audit_author.identifier_ORCID ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 117 _citation.language ? _citation.page_first 1689 _citation.page_last 1699 _citation.title ;Designing cyclic competence-stimulating peptide (CSP) analogs with pan-group quorum-sensing inhibition activity inStreptococcus pneumoniae. ; _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.1915812117 _citation.pdbx_database_id_PubMed 31915298 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yang, Y.' 1 ? primary 'Lin, J.' 2 ? primary 'Harrington, A.' 3 ? primary 'Cornilescu, G.' 4 ? primary 'Lau, G.W.' 5 ? primary 'Tal-Gan, Y.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Competence-stimulating peptide type 1' _entity.formula_weight 2160.653 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation 'E1A, K6(DPP), D10E' _entity.pdbx_fragment ? _entity.details ;DPP and GLU were chemically added to the 6th and 10th positions and then cyclized. However, during structure calculation, GLU10 was labeled as GLN10 to construct the macrocycle for convenience. GLN10 was kept in the final coordinate file and chemical shift file for consistency. The actual sequence is still: AMRLS(DPP)FFR(GLU)FILQRKK ; # _entity_name_com.entity_id 1 _entity_name_com.name CSP-1 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'AMRLS(DPP)FFRQFILQRKK' _entity_poly.pdbx_seq_one_letter_code_can AMRLSAFFRQFILQRKK _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 MET n 1 3 ARG n 1 4 LEU n 1 5 SER n 1 6 DPP n 1 7 PHE n 1 8 PHE n 1 9 ARG n 1 10 GLN n 1 11 PHE n 1 12 ILE n 1 13 LEU n 1 14 GLN n 1 15 ARG n 1 16 LYS n 1 17 LYS n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 17 _pdbx_entity_src_syn.organism_scientific 'Streptococcus pneumoniae' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 1313 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CSP1_STREE _struct_ref.pdbx_db_accession P60242 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code EMRLSKFFRDFILQRKK _struct_ref.pdbx_align_begin 25 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6V1N _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 17 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P60242 _struct_ref_seq.db_align_beg 25 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 41 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 17 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6V1N ALA A 1 ? UNP P60242 GLU 25 'engineered mutation' 1 1 1 6V1N DPP A 6 ? UNP P60242 LYS 30 'engineered mutation' 6 2 1 6V1N GLN A 10 ? UNP P60242 ASP 34 'engineered mutation' 10 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DPP 'L-peptide linking' n 'DIAMINOPROPANOIC ACID' ? 'C3 H8 N2 O2' 104.108 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H COSY' 1 isotropic 2 1 1 '2D 1H-1H TOCSY' 1 isotropic 3 1 1 '2D 1H-1H NOESY' 1 isotropic 4 1 1 '2D 1H-13C HSQC' 1 isotropic 5 1 1 '2D 1H-15N HSQC' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.4 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.15 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units M _pdbx_nmr_exptl_sample_conditions.label 1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents ;1.9 mM CSP1-E1A-cyc(Dap6E10), 250 mM deuterium DPC, 137 mM sodium chloride, 2.7 mM potassium chloride, 10 mM Na2HPO4, 1.8 mM KH2PO4, 90% H2O/10% D2O ; _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label 1 _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 900 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.entry_id 6V1N _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details 'WITH EEFX REFINEMENT' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 6V1N _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' # _pdbx_nmr_representative.entry_id 6V1N _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement 'X-PLOR NIH' ? SCHWIETERS 1 refinement 'X-PLOR NIH' ? KUSZEWSKI 2 'structure solution' Sparky ? ? 3 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6V1N _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 6V1N _struct.title 'CSP1-E1A-cyc(Dap6E10)' _struct.pdbx_descriptor 'competence-stimulating peptide type 1' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6V1N _struct_keywords.text 'modulator, quorum sensing, BIOSYNTHETIC PROTEIN' _struct_keywords.pdbx_keywords 'BIOSYNTHETIC PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A SER 5 C ? ? ? 1_555 A DPP 6 N ? ? A SER 5 A DPP 6 1_555 ? ? ? ? ? ? ? 1.374 ? covale2 covale both ? A DPP 6 C ? ? ? 1_555 A PHE 7 N ? ? A DPP 6 A PHE 7 1_555 ? ? ? ? ? ? ? 1.349 ? covale3 covale none ? A DPP 6 CB ? ? ? 1_555 A GLN 10 NE2 ? ? A DPP 6 A GLN 10 1_555 ? ? ? ? ? ? ? 1.543 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 6V1N _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 MET 2 2 2 MET MET A . n A 1 3 ARG 3 3 3 ARG ARG A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 DPP 6 6 6 DPP DPP A . n A 1 7 PHE 7 7 7 PHE PHE A . n A 1 8 PHE 8 8 8 PHE PHE A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 GLN 10 10 10 GLN GLN A . n A 1 11 PHE 11 11 11 PHE PHE A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 GLN 14 14 14 GLN GLN A . n A 1 15 ARG 15 15 15 ARG ARG A . n A 1 16 LYS 16 16 16 LYS LYS A . n A 1 17 LYS 17 17 17 LYS LYS A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-01-08 2 'Structure model' 1 1 2020-01-22 3 'Structure model' 1 2 2020-02-05 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_PubMed' 2 2 'Structure model' '_citation.title' 3 2 'Structure model' '_citation_author.name' 4 3 'Structure model' '_citation.journal_volume' 5 3 'Structure model' '_citation.page_first' 6 3 'Structure model' '_citation.page_last' # _pdbx_entry_details.entry_id 6V1N _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;DPP and GLU were chemically added to the 6th and 10th positions and then cyclized. However, during structure calculation, GLU10 was labeled as GLN10 to construct the macrocycle for convenience. GLN10 was kept in the final coordinate file and chemical shift file for consistency. The actual sequence is still: AMRLS(DPP)FFR(GLU)FILQRKK ; # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'CSP1-E1A-cyc(Dap6E10)' 1.9 ? mM 'natural abundance' 1 DPC 250 ? mM deuterium 1 'sodium chloride' 137 ? mM 'natural abundance' 1 'potassium chloride' 2.7 ? mM 'natural abundance' 1 Na2HPO4 10 ? mM 'natural abundance' 1 KH2PO4 1.8 ? mM 'natural abundance' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A LEU 13 ? ? H A LYS 17 ? ? 1.53 2 2 O A LEU 13 ? ? H A LYS 17 ? ? 1.53 3 3 O A LEU 13 ? ? H A LYS 17 ? ? 1.58 4 4 O A LEU 13 ? ? H A LYS 17 ? ? 1.50 5 5 O A LEU 13 ? ? H A LYS 17 ? ? 1.54 6 6 O A LEU 13 ? ? H A LYS 17 ? ? 1.50 7 7 O A LEU 13 ? ? H A LYS 17 ? ? 1.49 8 8 O A LEU 13 ? ? H A LYS 17 ? ? 1.50 9 9 O A LEU 13 ? ? H A LYS 17 ? ? 1.52 10 10 O A LEU 13 ? ? H A LYS 17 ? ? 1.55 11 11 O A LEU 13 ? ? H A LYS 17 ? ? 1.55 12 12 O A LEU 13 ? ? H A LYS 17 ? ? 1.54 13 13 O A LEU 13 ? ? H A LYS 17 ? ? 1.54 14 15 O A LEU 13 ? ? H A LYS 17 ? ? 1.51 15 16 O A LEU 13 ? ? H A LYS 17 ? ? 1.52 16 17 O A LEU 13 ? ? H A LYS 17 ? ? 1.53 17 18 O A LEU 13 ? ? H A LYS 17 ? ? 1.58 18 19 O A LEU 13 ? ? H A LYS 17 ? ? 1.53 19 20 O A LEU 13 ? ? H A LYS 17 ? ? 1.49 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 3 CB A PHE 11 ? ? CG A PHE 11 ? ? 1.405 1.509 -0.104 0.017 N 2 13 CB A PHE 11 ? ? CG A PHE 11 ? ? 1.406 1.509 -0.103 0.017 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A PHE 8 ? ? CG A PHE 8 ? ? CD2 A PHE 8 ? ? 115.00 120.80 -5.80 0.70 N 2 1 N A LEU 13 ? ? CA A LEU 13 ? ? CB A LEU 13 ? ? 96.24 110.40 -14.16 2.00 N 3 2 CB A PHE 8 ? ? CG A PHE 8 ? ? CD2 A PHE 8 ? ? 115.06 120.80 -5.74 0.70 N 4 2 N A LEU 13 ? ? CA A LEU 13 ? ? CB A LEU 13 ? ? 96.31 110.40 -14.09 2.00 N 5 3 CB A PHE 8 ? ? CG A PHE 8 ? ? CD2 A PHE 8 ? ? 114.97 120.80 -5.83 0.70 N 6 3 N A LEU 13 ? ? CA A LEU 13 ? ? CB A LEU 13 ? ? 96.43 110.40 -13.97 2.00 N 7 4 CB A PHE 8 ? ? CG A PHE 8 ? ? CD2 A PHE 8 ? ? 115.03 120.80 -5.77 0.70 N 8 4 N A LEU 13 ? ? CA A LEU 13 ? ? CB A LEU 13 ? ? 96.34 110.40 -14.06 2.00 N 9 5 CB A PHE 8 ? ? CG A PHE 8 ? ? CD2 A PHE 8 ? ? 114.87 120.80 -5.93 0.70 N 10 5 N A LEU 13 ? ? CA A LEU 13 ? ? CB A LEU 13 ? ? 96.26 110.40 -14.14 2.00 N 11 6 CB A PHE 8 ? ? CG A PHE 8 ? ? CD2 A PHE 8 ? ? 115.02 120.80 -5.78 0.70 N 12 6 N A LEU 13 ? ? CA A LEU 13 ? ? CB A LEU 13 ? ? 96.27 110.40 -14.13 2.00 N 13 7 CB A PHE 8 ? ? CG A PHE 8 ? ? CD2 A PHE 8 ? ? 115.03 120.80 -5.77 0.70 N 14 7 N A LEU 13 ? ? CA A LEU 13 ? ? CB A LEU 13 ? ? 96.32 110.40 -14.08 2.00 N 15 8 CB A PHE 8 ? ? CG A PHE 8 ? ? CD2 A PHE 8 ? ? 114.99 120.80 -5.81 0.70 N 16 8 N A LEU 13 ? ? CA A LEU 13 ? ? CB A LEU 13 ? ? 96.32 110.40 -14.08 2.00 N 17 9 CB A PHE 8 ? ? CG A PHE 8 ? ? CD2 A PHE 8 ? ? 114.98 120.80 -5.82 0.70 N 18 9 N A LEU 13 ? ? CA A LEU 13 ? ? CB A LEU 13 ? ? 96.32 110.40 -14.08 2.00 N 19 10 CB A PHE 8 ? ? CG A PHE 8 ? ? CD2 A PHE 8 ? ? 114.80 120.80 -6.00 0.70 N 20 10 N A LEU 13 ? ? CA A LEU 13 ? ? CB A LEU 13 ? ? 96.28 110.40 -14.12 2.00 N 21 11 CB A PHE 8 ? ? CG A PHE 8 ? ? CD2 A PHE 8 ? ? 115.00 120.80 -5.80 0.70 N 22 11 N A LEU 13 ? ? CA A LEU 13 ? ? CB A LEU 13 ? ? 96.24 110.40 -14.16 2.00 N 23 12 CB A PHE 8 ? ? CG A PHE 8 ? ? CD2 A PHE 8 ? ? 115.00 120.80 -5.80 0.70 N 24 12 N A LEU 13 ? ? CA A LEU 13 ? ? CB A LEU 13 ? ? 96.25 110.40 -14.15 2.00 N 25 13 CB A PHE 8 ? ? CG A PHE 8 ? ? CD2 A PHE 8 ? ? 114.93 120.80 -5.87 0.70 N 26 13 N A LEU 13 ? ? CA A LEU 13 ? ? CB A LEU 13 ? ? 96.28 110.40 -14.12 2.00 N 27 14 CB A PHE 8 ? ? CG A PHE 8 ? ? CD2 A PHE 8 ? ? 115.08 120.80 -5.72 0.70 N 28 14 N A LEU 13 ? ? CA A LEU 13 ? ? CB A LEU 13 ? ? 97.26 110.40 -13.14 2.00 N 29 15 CB A PHE 8 ? ? CG A PHE 8 ? ? CD2 A PHE 8 ? ? 114.97 120.80 -5.83 0.70 N 30 15 N A LEU 13 ? ? CA A LEU 13 ? ? CB A LEU 13 ? ? 96.26 110.40 -14.14 2.00 N 31 16 CB A PHE 8 ? ? CG A PHE 8 ? ? CD2 A PHE 8 ? ? 115.04 120.80 -5.76 0.70 N 32 16 N A LEU 13 ? ? CA A LEU 13 ? ? CB A LEU 13 ? ? 96.38 110.40 -14.02 2.00 N 33 17 CB A PHE 8 ? ? CG A PHE 8 ? ? CD2 A PHE 8 ? ? 114.94 120.80 -5.86 0.70 N 34 17 N A LEU 13 ? ? CA A LEU 13 ? ? CB A LEU 13 ? ? 96.18 110.40 -14.22 2.00 N 35 18 CB A PHE 8 ? ? CG A PHE 8 ? ? CD2 A PHE 8 ? ? 115.05 120.80 -5.75 0.70 N 36 18 N A LEU 13 ? ? CA A LEU 13 ? ? CB A LEU 13 ? ? 96.42 110.40 -13.98 2.00 N 37 19 CB A PHE 8 ? ? CG A PHE 8 ? ? CD2 A PHE 8 ? ? 114.97 120.80 -5.83 0.70 N 38 19 N A LEU 13 ? ? CA A LEU 13 ? ? CB A LEU 13 ? ? 96.31 110.40 -14.09 2.00 N 39 20 CB A PHE 8 ? ? CG A PHE 8 ? ? CD2 A PHE 8 ? ? 115.06 120.80 -5.74 0.70 N 40 20 N A LEU 13 ? ? CA A LEU 13 ? ? CB A LEU 13 ? ? 96.36 110.40 -14.04 2.00 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 4 ? ? -43.94 99.08 2 1 SER A 5 ? ? -99.70 -81.03 3 1 DPP A 6 ? ? -74.33 30.94 4 1 PHE A 8 ? ? 84.62 135.16 5 1 GLN A 10 ? ? -172.22 4.47 6 1 PHE A 11 ? ? -146.55 -37.09 7 2 LEU A 4 ? ? -38.25 98.32 8 2 SER A 5 ? ? -94.24 -81.50 9 2 DPP A 6 ? ? -74.28 29.89 10 2 PHE A 8 ? ? 84.84 135.15 11 2 GLN A 10 ? ? -172.41 4.29 12 2 PHE A 11 ? ? -146.19 -37.45 13 3 ARG A 3 ? ? 172.74 -36.80 14 3 LEU A 4 ? ? -47.21 93.95 15 3 PHE A 8 ? ? 86.20 134.85 16 3 GLN A 10 ? ? -170.33 4.73 17 3 PHE A 11 ? ? -147.20 -38.73 18 4 ARG A 3 ? ? 173.00 -37.12 19 4 LEU A 4 ? ? -49.51 98.05 20 4 SER A 5 ? ? -93.87 -80.42 21 4 DPP A 6 ? ? -75.43 29.85 22 4 PHE A 8 ? ? 84.50 135.10 23 4 GLN A 10 ? ? -172.09 3.96 24 4 PHE A 11 ? ? -145.47 -37.97 25 5 LEU A 4 ? ? -32.48 95.91 26 5 PHE A 8 ? ? 85.95 134.36 27 5 GLN A 10 ? ? -171.29 4.59 28 5 PHE A 11 ? ? -145.41 -39.66 29 6 ARG A 3 ? ? 173.34 -37.27 30 6 LEU A 4 ? ? -48.33 98.31 31 6 SER A 5 ? ? -91.45 -84.44 32 6 DPP A 6 ? ? -73.73 30.47 33 6 PHE A 8 ? ? 84.77 135.09 34 6 GLN A 10 ? ? -172.34 4.39 35 6 PHE A 11 ? ? -146.08 -37.65 36 7 ARG A 3 ? ? 172.38 -36.56 37 7 LEU A 4 ? ? -49.94 98.18 38 7 SER A 5 ? ? -92.86 -82.28 39 7 DPP A 6 ? ? -74.35 30.30 40 7 PHE A 8 ? ? 84.49 135.08 41 7 GLN A 10 ? ? -172.38 3.98 42 7 PHE A 11 ? ? -145.34 -37.77 43 8 LEU A 4 ? ? -35.69 97.98 44 8 SER A 5 ? ? -94.38 -80.33 45 8 DPP A 6 ? ? -75.41 29.74 46 8 PHE A 8 ? ? 84.64 135.06 47 8 GLN A 10 ? ? -172.14 4.64 48 8 PHE A 11 ? ? -146.05 -38.10 49 9 LEU A 4 ? ? -35.75 99.23 50 9 SER A 5 ? ? -93.63 -83.85 51 9 DPP A 6 ? ? -73.82 30.26 52 9 PHE A 8 ? ? 84.63 134.87 53 9 GLN A 10 ? ? -172.50 4.14 54 9 PHE A 11 ? ? -144.96 -38.29 55 10 ARG A 3 ? ? 171.22 -35.62 56 10 LEU A 4 ? ? -50.02 94.43 57 10 PHE A 8 ? ? 85.99 134.47 58 10 GLN A 10 ? ? -171.16 4.59 59 10 PHE A 11 ? ? -145.72 -39.83 60 11 LEU A 4 ? ? -33.60 99.00 61 11 SER A 5 ? ? -92.88 -83.98 62 11 DPP A 6 ? ? -73.90 30.22 63 11 PHE A 8 ? ? 84.65 134.90 64 11 GLN A 10 ? ? -172.65 4.80 65 11 PHE A 11 ? ? -146.03 -37.84 66 12 LEU A 4 ? ? -35.23 98.59 67 12 SER A 5 ? ? -93.88 -82.51 68 12 DPP A 6 ? ? -74.19 30.10 69 12 PHE A 8 ? ? 84.56 135.12 70 12 GLN A 10 ? ? -172.35 4.50 71 12 PHE A 11 ? ? -146.00 -37.79 72 13 ARG A 3 ? ? 171.58 -35.85 73 13 LEU A 4 ? ? -49.42 94.46 74 13 PHE A 8 ? ? 85.82 134.51 75 13 GLN A 10 ? ? -171.07 4.07 76 13 PHE A 11 ? ? -145.88 -38.70 77 14 ARG A 3 ? ? 173.09 -36.70 78 14 LEU A 4 ? ? -47.72 98.75 79 14 SER A 5 ? ? -90.25 -85.56 80 14 DPP A 6 ? ? -73.54 29.74 81 14 PHE A 8 ? ? 84.30 135.07 82 14 GLN A 10 ? ? -173.38 1.02 83 14 PHE A 11 ? ? -141.02 -40.09 84 14 LEU A 13 ? ? -118.79 59.75 85 14 GLN A 14 ? ? -137.94 -32.70 86 15 ARG A 3 ? ? 173.07 -36.77 87 15 LEU A 4 ? ? -48.77 97.75 88 15 SER A 5 ? ? -93.47 -80.56 89 15 DPP A 6 ? ? -75.38 29.78 90 15 PHE A 8 ? ? 84.62 134.91 91 15 GLN A 10 ? ? -172.46 4.78 92 15 PHE A 11 ? ? -146.16 -37.79 93 16 ARG A 3 ? ? 168.91 -37.09 94 16 LEU A 4 ? ? -49.73 98.07 95 16 SER A 5 ? ? -91.59 -83.34 96 16 DPP A 6 ? ? -73.93 29.99 97 16 PHE A 8 ? ? 84.75 135.09 98 16 GLN A 10 ? ? -172.41 4.41 99 16 PHE A 11 ? ? -146.01 -37.62 100 17 LEU A 4 ? ? -33.57 98.91 101 17 SER A 5 ? ? -93.16 -84.02 102 17 DPP A 6 ? ? -73.88 30.38 103 17 PHE A 8 ? ? 84.69 134.85 104 17 GLN A 10 ? ? -172.42 4.95 105 17 PHE A 11 ? ? -146.09 -37.78 106 18 ARG A 3 ? ? 173.53 -36.95 107 18 LEU A 4 ? ? -48.35 99.00 108 18 SER A 5 ? ? -92.20 -84.33 109 18 DPP A 6 ? ? -73.69 30.59 110 18 PHE A 8 ? ? 84.80 135.32 111 18 GLN A 10 ? ? -172.01 3.82 112 18 PHE A 11 ? ? -145.11 -38.27 113 19 LEU A 4 ? ? -45.85 99.41 114 19 SER A 5 ? ? -100.56 -80.13 115 19 DPP A 6 ? ? -74.59 30.39 116 19 PHE A 8 ? ? 85.32 134.74 117 19 GLN A 10 ? ? -171.88 4.89 118 19 PHE A 11 ? ? -146.63 -38.05 119 20 ARG A 3 ? ? 174.52 -37.77 120 20 LEU A 4 ? ? -47.57 98.42 121 20 SER A 5 ? ? -89.87 -85.32 122 20 DPP A 6 ? ? -73.60 30.46 123 20 PHE A 8 ? ? 84.94 135.03 124 20 GLN A 10 ? ? -172.34 4.46 125 20 PHE A 11 ? ? -146.04 -37.82 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 PHE A 8 ? ? 0.093 'SIDE CHAIN' 2 2 PHE A 8 ? ? 0.092 'SIDE CHAIN' 3 3 PHE A 8 ? ? 0.093 'SIDE CHAIN' 4 4 PHE A 8 ? ? 0.093 'SIDE CHAIN' 5 5 PHE A 8 ? ? 0.094 'SIDE CHAIN' 6 6 PHE A 8 ? ? 0.093 'SIDE CHAIN' 7 7 PHE A 8 ? ? 0.093 'SIDE CHAIN' 8 8 PHE A 8 ? ? 0.093 'SIDE CHAIN' 9 9 PHE A 8 ? ? 0.093 'SIDE CHAIN' 10 10 PHE A 8 ? ? 0.094 'SIDE CHAIN' 11 11 PHE A 8 ? ? 0.093 'SIDE CHAIN' 12 12 PHE A 8 ? ? 0.093 'SIDE CHAIN' 13 13 PHE A 8 ? ? 0.093 'SIDE CHAIN' 14 14 PHE A 8 ? ? 0.093 'SIDE CHAIN' 15 15 PHE A 8 ? ? 0.093 'SIDE CHAIN' 16 16 PHE A 8 ? ? 0.093 'SIDE CHAIN' 17 17 PHE A 8 ? ? 0.093 'SIDE CHAIN' 18 18 PHE A 8 ? ? 0.093 'SIDE CHAIN' 19 19 PHE A 8 ? ? 0.094 'SIDE CHAIN' 20 20 PHE A 8 ? ? 0.093 'SIDE CHAIN' # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' ? 1 'National Science Foundation (NSF, United States)' 'United States' ? 2 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'mass spectrometry' _pdbx_struct_assembly_auth_evidence.details ? #