HEADER HYDROLASE 22-NOV-19 6V23 TITLE LIGAND-FREE L-ASPRAGINASE II FROM E. COLI (ECAII) COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-ASPARAGINASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: L-ASPARAGINASE II,L-ASNASE II,L-ASPARAGINE AMIDOHYDROLASE COMPND 5 II; COMPND 6 EC: 3.5.1.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: ANSB, B2957, JW2924; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: JC2; SOURCE 10 EXPRESSION_SYSTEM_CELL: MESOPHILIC BACTERIA; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET22B(+) KEYWDS L-ASPARAGINE HYDROLASE, ANTI-CANCER DRUG, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.LUBKOWSKI,A.WLODAWER REVDAT 4 11-OCT-23 6V23 1 REMARK REVDAT 3 10-JUN-20 6V23 1 JRNL REVDAT 2 27-MAY-20 6V23 1 JRNL REVDAT 1 20-MAY-20 6V23 0 JRNL AUTH J.LUBKOWSKI,J.VANEGAS,W.K.CHAN,P.L.LORENZI,J.N.WEINSTEIN, JRNL AUTH 2 S.SUKHAREV,D.FUSHMAN,S.REMPE,A.ANISHKIN,A.WLODAWER JRNL TITL MECHANISM OF CATALYSIS BY L-ASPARAGINASE. JRNL REF BIOCHEMISTRY V. 59 1927 2020 JRNL REFN ISSN 0006-2960 JRNL PMID 32364696 JRNL DOI 10.1021/ACS.BIOCHEM.0C00116 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0253 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 26294 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1396 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1327 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 65.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.3370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2357 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 235 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.23000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : 0.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.134 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.138 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.102 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.294 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2409 ; 0.019 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2218 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3289 ; 2.296 ; 1.646 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5160 ; 1.586 ; 1.580 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 319 ; 7.438 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 109 ;39.946 ;24.771 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 389 ;13.964 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;14.183 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 338 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2737 ; 0.015 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 443 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6V23 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1000245609. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : X-RAY MIRRORS VARIMAX HF REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27916 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.48900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3ECA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MAGNESIUM FORMATE AND 16% (W/V) REMARK 280 PEG3350, PH 7.3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.01400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.59600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.01500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.01400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.59600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.01500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.01400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 35.59600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.01500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.01400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 35.59600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.01500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 130.03000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 130.03000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 GLY A 16 REMARK 465 GLY A 17 REMARK 465 ASP A 18 REMARK 465 SER A 19 REMARK 465 ALA A 20 REMARK 465 THR A 21 REMARK 465 LYS A 22 REMARK 465 SER A 23 REMARK 465 ASN A 24 REMARK 465 TYR A 25 REMARK 465 THR A 26 REMARK 465 VAL A 27 REMARK 465 GLY A 28 REMARK 465 LYS A 29 REMARK 465 VAL A 30 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -2 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A -1 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 107 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 312 O HOH A 402 2.11 REMARK 500 O HOH A 432 O HOH A 463 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 500 O HOH A 500 4556 0.90 REMARK 500 O HOH A 430 O HOH A 430 2555 1.19 REMARK 500 O HOH A 449 O HOH A 533 2555 1.74 REMARK 500 O HOH A 459 O HOH A 459 3556 1.76 REMARK 500 O HOH A 413 O HOH A 492 3556 1.79 REMARK 500 O HOH A 492 O HOH A 492 3556 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 230 C ALA A 230 O 0.120 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 61 CG - SD - CE ANGL. DEV. = 10.7 DEGREES REMARK 500 ASP A 78 CB - CA - C ANGL. DEV. = -13.8 DEGREES REMARK 500 ARG A 144 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 GLN A 312 CB - CA - C ANGL. DEV. = -13.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 106 32.07 -98.98 REMARK 500 THR A 198 -119.87 46.30 REMARK 500 TYR A 220 162.38 167.69 REMARK 500 SER A 270 -168.27 -111.42 REMARK 500 ALA A 282 -125.42 -113.51 REMARK 500 REMARK 500 REMARK: NULL DBREF 6V23 A 1 326 UNP P00805 ASPG2_ECOLI 23 348 SEQADV 6V23 MET A -6 UNP P00805 EXPRESSION TAG SEQADV 6V23 HIS A -5 UNP P00805 EXPRESSION TAG SEQADV 6V23 HIS A -4 UNP P00805 EXPRESSION TAG SEQADV 6V23 HIS A -3 UNP P00805 EXPRESSION TAG SEQADV 6V23 HIS A -2 UNP P00805 EXPRESSION TAG SEQADV 6V23 HIS A -1 UNP P00805 EXPRESSION TAG SEQADV 6V23 HIS A 0 UNP P00805 EXPRESSION TAG SEQRES 1 A 333 MET HIS HIS HIS HIS HIS HIS LEU PRO ASN ILE THR ILE SEQRES 2 A 333 LEU ALA THR GLY GLY THR ILE ALA GLY GLY GLY ASP SER SEQRES 3 A 333 ALA THR LYS SER ASN TYR THR VAL GLY LYS VAL GLY VAL SEQRES 4 A 333 GLU ASN LEU VAL ASN ALA VAL PRO GLN LEU LYS ASP ILE SEQRES 5 A 333 ALA ASN VAL LYS GLY GLU GLN VAL VAL ASN ILE GLY SER SEQRES 6 A 333 GLN ASP MET ASN ASP ASN VAL TRP LEU THR LEU ALA LYS SEQRES 7 A 333 LYS ILE ASN THR ASP CYS ASP LYS THR ASP GLY PHE VAL SEQRES 8 A 333 ILE THR HIS GLY THR ASP THR MET GLU GLU THR ALA TYR SEQRES 9 A 333 PHE LEU ASP LEU THR VAL LYS CYS ASP LYS PRO VAL VAL SEQRES 10 A 333 MET VAL GLY ALA MET ARG PRO SER THR SER MET SER ALA SEQRES 11 A 333 ASP GLY PRO PHE ASN LEU TYR ASN ALA VAL VAL THR ALA SEQRES 12 A 333 ALA ASP LYS ALA SER ALA ASN ARG GLY VAL LEU VAL VAL SEQRES 13 A 333 MET ASN ASP THR VAL LEU ASP GLY ARG ASP VAL THR LYS SEQRES 14 A 333 THR ASN THR THR ASP VAL ALA THR PHE LYS SER VAL ASN SEQRES 15 A 333 TYR GLY PRO LEU GLY TYR ILE HIS ASN GLY LYS ILE ASP SEQRES 16 A 333 TYR GLN ARG THR PRO ALA ARG LYS HIS THR SER ASP THR SEQRES 17 A 333 PRO PHE ASP VAL SER LYS LEU ASN GLU LEU PRO LYS VAL SEQRES 18 A 333 GLY ILE VAL TYR ASN TYR ALA ASN ALA SER ASP LEU PRO SEQRES 19 A 333 ALA LYS ALA LEU VAL ASP ALA GLY TYR ASP GLY ILE VAL SEQRES 20 A 333 SER ALA GLY VAL GLY ASN GLY ASN LEU TYR LYS SER VAL SEQRES 21 A 333 PHE ASP THR LEU ALA THR ALA ALA LYS THR GLY THR ALA SEQRES 22 A 333 VAL VAL ARG SER SER ARG VAL PRO THR GLY ALA THR THR SEQRES 23 A 333 GLN ASP ALA GLU VAL ASP ASP ALA LYS TYR GLY PHE VAL SEQRES 24 A 333 ALA SER GLY THR LEU ASN PRO GLN LYS ALA ARG VAL LEU SEQRES 25 A 333 LEU GLN LEU ALA LEU THR GLN THR LYS ASP PRO GLN GLN SEQRES 26 A 333 ILE GLN GLN ILE PHE ASN GLN TYR FORMUL 2 HOH *235(H2 O) HELIX 1 AA1 ASN A 34 VAL A 39 1 6 HELIX 2 AA2 PRO A 40 ILE A 45 5 6 HELIX 3 AA3 GLY A 57 MET A 61 5 5 HELIX 4 AA4 ASN A 62 CYS A 77 1 16 HELIX 5 AA5 ASP A 78 THR A 80 5 3 HELIX 6 AA6 THR A 91 VAL A 103 1 13 HELIX 7 AA7 ASP A 124 ASP A 138 1 15 HELIX 8 AA8 LYS A 139 ALA A 142 5 4 HELIX 9 AA9 HIS A 197 THR A 201 5 5 HELIX 10 AB1 ASP A 225 ASP A 233 1 9 HELIX 11 AB2 TYR A 250 THR A 263 1 14 HELIX 12 AB3 ASP A 285 GLY A 290 1 6 HELIX 13 AB4 ASN A 298 THR A 313 1 16 HELIX 14 AB5 ASP A 315 TYR A 326 1 12 SHEET 1 AA1 8 ASN A 47 GLN A 52 0 SHEET 2 AA1 8 ASN A 3 ALA A 8 1 N ILE A 6 O LYS A 49 SHEET 3 AA1 8 GLY A 82 THR A 86 1 O GLY A 82 N THR A 5 SHEET 4 AA1 8 VAL A 109 VAL A 112 1 O VAL A 112 N ILE A 85 SHEET 5 AA1 8 LEU A 147 MET A 150 1 O LEU A 147 N MET A 111 SHEET 6 AA1 8 THR A 153 ASP A 156 -1 O LEU A 155 N VAL A 148 SHEET 7 AA1 8 GLY A 180 HIS A 183 -1 O GLY A 180 N VAL A 154 SHEET 8 AA1 8 LYS A 186 TYR A 189 -1 O LYS A 186 N HIS A 183 SHEET 1 AA2 2 VAL A 160 LYS A 162 0 SHEET 2 AA2 2 PHE A 171 SER A 173 -1 O LYS A 172 N THR A 161 SHEET 1 AA3 4 VAL A 214 TYR A 218 0 SHEET 2 AA3 4 GLY A 238 GLY A 243 1 O VAL A 240 N GLY A 215 SHEET 3 AA3 4 ALA A 266 SER A 271 1 O SER A 270 N SER A 241 SHEET 4 AA3 4 PHE A 291 ALA A 293 1 O VAL A 292 N VAL A 267 SSBOND 1 CYS A 77 CYS A 105 1555 1555 2.21 CRYST1 62.028 71.192 130.030 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016122 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014047 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007691 0.00000