HEADER LYASE 25-NOV-19 6V2N TITLE CRYSTAL STRUCTURE OF E. COLI PHOSPHOENOLPYRUVATE CARBOXYKINASE MUTANT TITLE 2 LYS254SER COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOENOLPYRUVATE CARBOXYKINASE (ATP); COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PEPCK; COMPND 5 EC: 4.1.1.49; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: PCKA, D9G24_04840; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LYASE, ENZYME, PEPCARBOXYKINASE EXPDTA X-RAY DIFFRACTION AUTHOR A.S.SOKARIBO,J.H.COTELESAGE,B.NOVAKOVSKI,H.GOLDIE,D.SANDERS REVDAT 3 11-OCT-23 6V2N 1 LINK REVDAT 2 22-JAN-20 6V2N 1 JRNL REVDAT 1 25-DEC-19 6V2N 0 SPRSDE 25-DEC-19 6V2N 6CU4 JRNL AUTH A.SOKARIBO,B.A.A.NOVAKOVSKI,J.COTELESAGE,A.P.WHITE, JRNL AUTH 2 D.SANDERS,H.GOLDIE JRNL TITL KINETIC AND STRUCTURAL ANALYSIS OF ESCHERICHIA COLI JRNL TITL 2 PHOSPHOENOLPYRUVATE CARBOXYKINASE MUTANTS. JRNL REF BIOCHIM BIOPHYS ACTA GEN V.1864 29517 2020 JRNL REF 2 SUBJ JRNL REFN ISSN 1872-8006 JRNL PMID 31911238 JRNL DOI 10.1016/J.BBAGEN.2020.129517 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 64727 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1353 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.2900 - 3.5500 1.00 6455 138 0.1424 0.1400 REMARK 3 2 3.5500 - 2.8200 1.00 6365 136 0.1464 0.1748 REMARK 3 3 2.8200 - 2.4600 1.00 6322 134 0.1524 0.2153 REMARK 3 4 2.4600 - 2.2400 1.00 6323 136 0.1459 0.1574 REMARK 3 5 2.2400 - 2.0800 1.00 6350 135 0.1412 0.1948 REMARK 3 6 2.0800 - 1.9600 1.00 6291 134 0.1411 0.1632 REMARK 3 7 1.9600 - 1.8600 1.00 6319 135 0.1418 0.1996 REMARK 3 8 1.8600 - 1.7800 1.00 6316 135 0.1453 0.1857 REMARK 3 9 1.7800 - 1.7100 1.00 6290 134 0.1542 0.1959 REMARK 3 10 1.7100 - 1.6500 1.00 6343 136 0.1652 0.2101 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 12.5846 -0.3319 11.8894 REMARK 3 T TENSOR REMARK 3 T11: 0.0467 T22: 0.0558 REMARK 3 T33: 0.0635 T12: 0.0077 REMARK 3 T13: -0.0061 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.2069 L22: 0.2607 REMARK 3 L33: 0.4968 L12: -0.0137 REMARK 3 L13: -0.0017 L23: -0.0197 REMARK 3 S TENSOR REMARK 3 S11: 0.0001 S12: -0.0261 S13: 0.0273 REMARK 3 S21: 0.0425 S22: 0.0104 S23: -0.0391 REMARK 3 S31: 0.0191 S32: 0.0152 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6V2N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1000245645. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 105 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64733 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 44.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.07574 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.31850 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.560 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1OEN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 UL DROP CONTAINING 2 MG/ML LYS254SER REMARK 280 E. COLI PCK, 5 MM MNCL2, 5MM MGCL2, 2MM ATP, 2MM PYRUVATE, 1 MM REMARK 280 EDTA, 200 MM AMMONIUM ACETATE, 100 MM SODIUM ACETATE PH 4.8, REMARK 280 0.01 MM DTT AND 10% PEG 4000, WAS ADDED TO 2 UL DROP CONTAINING REMARK 280 0.2 M CALCIUM CHLORIDE AND 20% PEG. ROD LIKE CRYSTALS FORMED REMARK 280 AFTER 7 DAYS, WERE HARVESTED, AND SOAKED IN CRYOPROTECTANT REMARK 280 SOLUTION (30% GLYCEROL, 1MM EDTA, 100 MM SODIUM ACETATE, 200 MM REMARK 280 AMMONIUM ACETATE AND 12% PEG 4000) FOR 10 SECONDS AND FLASH REMARK 280 COOLED IN LIQUID NITROGEN, MICROBATCH, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.32350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 VAL A 3 REMARK 465 ASN A 4 REMARK 465 ASN A 5 REMARK 465 SER A 250 REMARK 465 GLY A 251 REMARK 465 THR A 252 REMARK 465 GLY A 253 REMARK 465 LYS A 254 REMARK 465 THR A 255 REMARK 465 LYS A 390 REMARK 465 LEU A 391 REMARK 465 ALA A 392 REMARK 465 GLY A 393 REMARK 465 THR A 394 REMARK 465 GLU A 395 REMARK 465 ARG A 396 REMARK 465 GLY A 397 REMARK 465 ILE A 398 REMARK 465 THR A 399 REMARK 465 GLU A 400 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 401 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1018 O HOH A 1151 2.01 REMARK 500 NH1 ARG A 79 O HOH A 701 2.07 REMARK 500 O HOH A 1004 O HOH A 1026 2.10 REMARK 500 O HOH A 1069 O HOH A 1142 2.10 REMARK 500 O HOH A 821 O HOH A 1138 2.11 REMARK 500 O HOH A 960 O HOH A 1129 2.15 REMARK 500 O HOH A 1171 O HOH A 1215 2.17 REMARK 500 O HOH A 811 O HOH A 1053 2.18 REMARK 500 O HOH A 923 O HOH A 1150 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 182 O HOH A 751 2655 1.89 REMARK 500 OE1 GLN A 34 O HOH A 1178 1554 1.90 REMARK 500 OE1 GLU A 158 O HOH A 935 2545 1.98 REMARK 500 O HOH A 1114 O HOH A 1151 2555 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 13 CG GLU A 13 CD -0.096 REMARK 500 VAL A 148 CB VAL A 148 CG2 -0.174 REMARK 500 SER A 285 CB SER A 285 OG 0.179 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 13 CA - CB - CG ANGL. DEV. = -14.7 DEGREES REMARK 500 ARG A 74 CD - NE - CZ ANGL. DEV. = 9.6 DEGREES REMARK 500 ARG A 74 NE - CZ - NH1 ANGL. DEV. = 8.0 DEGREES REMARK 500 ARG A 74 NE - CZ - NH2 ANGL. DEV. = -8.5 DEGREES REMARK 500 ASP A 260 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG A 305 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 305 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 333 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 22 142.12 -177.84 REMARK 500 ASN A 26 64.90 32.74 REMARK 500 ASP A 269 -40.10 -145.73 REMARK 500 ASP A 274 -166.25 -113.86 REMARK 500 ASP A 307 -13.96 96.83 REMARK 500 ASN A 331 44.18 -100.37 REMARK 500 ASN A 444 -169.97 -115.73 REMARK 500 MET A 477 -53.35 74.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1218 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A1219 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH A1220 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH A1221 DISTANCE = 6.97 ANGSTROMS REMARK 525 HOH A1222 DISTANCE = 7.41 ANGSTROMS REMARK 525 HOH A1223 DISTANCE = 7.98 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 269 OD1 REMARK 620 2 ASP A 269 OD2 54.8 REMARK 620 3 HOH A1069 O 134.2 163.4 REMARK 620 4 HOH A1084 O 92.6 82.7 82.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 602 DBREF1 6V2N A 1 540 UNP A0A400L9R1_ECOLX DBREF2 6V2N A A0A400L9R1 1 540 SEQADV 6V2N GLY A 6 UNP A0A400L9R CYS 6 CONFLICT SEQADV 6V2N ALA A 240 UNP A0A400L9R LYS 240 CONFLICT SEQADV 6V2N ALA A 262 UNP A0A400L9R LYS 262 CONFLICT SEQADV 6V2N SER A 285 UNP A0A400L9R CYS 285 CONFLICT SEQADV 6V2N ALA A 302 UNP A0A400L9R ASN 302 CONFLICT SEQADV 6V2N LYS A 315 UNP A0A400L9R VAL 315 CONFLICT SEQADV 6V2N ASN A 318 UNP A0A400L9R ASP 318 CONFLICT SEQADV 6V2N GLY A 492 UNP A0A400L9R LYS 492 CONFLICT SEQADV 6V2N ALA A 539 UNP A0A400L9R LYS 539 CONFLICT SEQRES 1 A 540 MET ARG VAL ASN ASN GLY LEU THR PRO GLN GLU LEU GLU SEQRES 2 A 540 ALA TYR GLY ILE SER ASP VAL HIS ASP ILE VAL TYR ASN SEQRES 3 A 540 PRO SER TYR ASP LEU LEU TYR GLN GLU GLU LEU ASP PRO SEQRES 4 A 540 SER LEU THR GLY TYR GLU ARG GLY VAL LEU THR ASN LEU SEQRES 5 A 540 GLY ALA VAL ALA VAL ASP THR GLY ILE PHE THR GLY ARG SEQRES 6 A 540 SER PRO LYS ASP LYS TYR ILE VAL ARG ASP ASP THR THR SEQRES 7 A 540 ARG ASP THR PHE TRP TRP ALA ASP LYS GLY LYS GLY LYS SEQRES 8 A 540 ASN ASP ASN LYS PRO LEU SER PRO GLU THR TRP GLN HIS SEQRES 9 A 540 LEU LYS GLY LEU VAL THR ARG GLN LEU SER GLY LYS ARG SEQRES 10 A 540 LEU PHE VAL VAL ASP ALA PHE CYS GLY ALA ASN PRO ASP SEQRES 11 A 540 THR ARG LEU SER VAL ARG PHE ILE THR GLU VAL ALA TRP SEQRES 12 A 540 GLN ALA HIS PHE VAL LYS ASN MET PHE ILE ARG PRO SER SEQRES 13 A 540 ASP GLU GLU LEU ALA GLY PHE LYS PRO ASP PHE ILE VAL SEQRES 14 A 540 MET ASN GLY ALA LYS CYS THR ASN PRO GLN TRP LYS GLU SEQRES 15 A 540 GLN GLY LEU ASN SER GLU ASN PHE VAL ALA PHE ASN LEU SEQRES 16 A 540 THR GLU ARG MET GLN LEU ILE GLY GLY THR TRP TYR GLY SEQRES 17 A 540 GLY GLU MET LYS LYS GLY MET PHE SER MET MET ASN TYR SEQRES 18 A 540 LEU LEU PRO LEU LYS GLY ILE ALA SER MET HIS CYS SER SEQRES 19 A 540 ALA ASN VAL GLY GLU ALA GLY ASP VAL ALA VAL PHE PHE SEQRES 20 A 540 GLY LEU SER GLY THR GLY LYS THR THR LEU SER THR ASP SEQRES 21 A 540 PRO ALA ARG ARG LEU ILE GLY ASP ASP GLU HIS GLY TRP SEQRES 22 A 540 ASP ASP ASP GLY VAL PHE ASN PHE GLU GLY GLY SER TYR SEQRES 23 A 540 ALA LYS THR ILE LYS LEU SER LYS GLU ALA GLU PRO GLU SEQRES 24 A 540 ILE TYR ALA ALA ILE ARG ARG ASP ALA LEU LEU GLU ASN SEQRES 25 A 540 VAL THR LYS ARG GLU ASN GLY THR ILE ASP PHE ASP ASP SEQRES 26 A 540 GLY SER LYS THR GLU ASN THR ARG VAL SER TYR PRO ILE SEQRES 27 A 540 TYR HIS ILE ASP ASN ILE VAL LYS PRO VAL SER LYS ALA SEQRES 28 A 540 GLY HIS ALA THR LYS VAL ILE PHE LEU THR ALA ASP ALA SEQRES 29 A 540 PHE GLY VAL LEU PRO PRO VAL SER ARG LEU THR ALA ASP SEQRES 30 A 540 GLN THR GLN TYR HIS PHE LEU SER GLY PHE THR ALA LYS SEQRES 31 A 540 LEU ALA GLY THR GLU ARG GLY ILE THR GLU PRO THR PRO SEQRES 32 A 540 THR PHE SER ALA CYS PHE GLY ALA ALA PHE LEU SER LEU SEQRES 33 A 540 HIS PRO THR GLN TYR ALA GLU VAL LEU VAL LYS ARG MET SEQRES 34 A 540 GLN ALA ALA GLY ALA GLN ALA TYR LEU VAL ASN THR GLY SEQRES 35 A 540 TRP ASN GLY THR GLY LYS ARG ILE SER ILE LYS ASP THR SEQRES 36 A 540 ARG ALA ILE ILE ASP ALA ILE LEU ASN GLY SER LEU ASP SEQRES 37 A 540 ASN ALA GLU THR PHE THR LEU PRO MET PHE ASN LEU ALA SEQRES 38 A 540 ILE PRO THR GLU LEU PRO GLY VAL ASP THR GLY ILE LEU SEQRES 39 A 540 ASP PRO ARG ASN THR TYR ALA SER PRO GLU GLN TRP GLN SEQRES 40 A 540 GLU LYS ALA GLU THR LEU ALA LYS LEU PHE ILE ASP ASN SEQRES 41 A 540 PHE ASP LYS TYR THR ASP THR PRO ALA GLY ALA ALA LEU SEQRES 42 A 540 VAL ALA ALA GLY PRO ALA LEU HET CA A 601 1 HET ACT A 602 4 HETNAM CA CALCIUM ION HETNAM ACT ACETATE ION FORMUL 2 CA CA 2+ FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 HOH *523(H2 O) HELIX 1 AA1 THR A 8 ALA A 14 1 7 HELIX 2 AA2 SER A 28 LEU A 37 1 10 HELIX 3 AA3 THR A 42 ARG A 46 5 5 HELIX 4 AA4 SER A 66 LYS A 68 5 3 HELIX 5 AA5 SER A 98 LEU A 113 1 16 HELIX 6 AA6 VAL A 141 PHE A 152 1 12 HELIX 7 AA7 SER A 156 GLY A 162 1 7 HELIX 8 AA8 GLY A 208 LEU A 223 1 16 HELIX 9 AA9 PRO A 224 GLY A 227 5 4 HELIX 10 AB1 GLU A 297 ALA A 303 1 7 HELIX 11 AB2 TYR A 339 ILE A 341 5 3 HELIX 12 AB3 THR A 375 GLY A 386 1 12 HELIX 13 AB4 ALA A 407 LEU A 414 5 8 HELIX 14 AB5 HIS A 417 GLY A 433 1 17 HELIX 15 AB6 SER A 451 ASN A 464 1 14 HELIX 16 AB7 ASP A 490 LEU A 494 5 5 HELIX 17 AB8 ASP A 495 TYR A 500 5 6 HELIX 18 AB9 SER A 502 ASP A 522 1 21 HELIX 19 AC1 LYS A 523 THR A 525 5 3 HELIX 20 AC2 THR A 527 VAL A 534 1 8 HELIX 21 AC3 ALA A 535 GLY A 537 5 3 SHEET 1 AA1 8 ASP A 22 TYR A 25 0 SHEET 2 AA1 8 ARG A 117 CYS A 125 1 O LEU A 118 N VAL A 24 SHEET 3 AA1 8 LEU A 133 THR A 139 -1 O THR A 139 N PHE A 119 SHEET 4 AA1 8 PHE A 167 GLY A 172 1 O VAL A 169 N ARG A 136 SHEET 5 AA1 8 MET A 199 GLY A 203 1 O GLN A 200 N MET A 170 SHEET 6 AA1 8 PHE A 190 ASN A 194 -1 N PHE A 190 O GLY A 203 SHEET 7 AA1 8 LYS A 70 VAL A 73 1 N VAL A 73 O PHE A 193 SHEET 8 AA1 8 LYS A 95 LEU A 97 1 O LYS A 95 N ILE A 72 SHEET 1 AA2 5 VAL A 48 LEU A 49 0 SHEET 2 AA2 5 VAL A 55 VAL A 57 -1 O ALA A 56 N VAL A 48 SHEET 3 AA2 5 LEU A 309 GLU A 311 1 O LEU A 310 N VAL A 55 SHEET 4 AA2 5 ARG A 333 PRO A 337 -1 O ARG A 333 N GLU A 311 SHEET 5 AA2 5 GLY A 284 LYS A 288 -1 N ALA A 287 O VAL A 334 SHEET 1 AA3 3 ALA A 229 HIS A 232 0 SHEET 2 AA3 3 GLU A 270 ASP A 274 -1 O HIS A 271 N MET A 231 SHEET 3 AA3 3 GLY A 277 ASN A 280 -1 O PHE A 279 N GLY A 272 SHEET 1 AA4 6 ARG A 264 GLY A 267 0 SHEET 2 AA4 6 SER A 234 VAL A 237 -1 N ALA A 235 O ILE A 266 SHEET 3 AA4 6 VAL A 243 PHE A 247 -1 O PHE A 246 N SER A 234 SHEET 4 AA4 6 ALA A 354 THR A 361 1 O LEU A 360 N PHE A 247 SHEET 5 AA4 6 GLN A 435 ASN A 440 1 O VAL A 439 N PHE A 359 SHEET 6 AA4 6 VAL A 371 ARG A 373 -1 N SER A 372 O LEU A 438 SHEET 1 AA5 2 THR A 314 LYS A 315 0 SHEET 2 AA5 2 ILE A 321 ASP A 322 -1 O ASP A 322 N THR A 314 SHEET 1 AA6 2 PHE A 387 THR A 388 0 SHEET 2 AA6 2 THR A 404 PHE A 405 -1 O THR A 404 N THR A 388 SHEET 1 AA7 2 THR A 472 LEU A 475 0 SHEET 2 AA7 2 LEU A 480 PRO A 483 -1 O ILE A 482 N PHE A 473 LINK OD1 ASP A 269 CA CA A 601 1555 1555 2.27 LINK OD2 ASP A 269 CA CA A 601 1555 1555 2.51 LINK CA CA A 601 O HOH A1069 1555 1555 2.33 LINK CA CA A 601 O HOH A1084 1555 1555 2.32 CISPEP 1 LYS A 346 PRO A 347 0 15.01 SITE 1 AC1 5 LYS A 213 HIS A 232 ASP A 269 HOH A1069 SITE 2 AC1 5 HOH A1084 SITE 1 AC2 5 ARG A 65 TYR A 207 ARG A 333 HOH A 831 SITE 2 AC2 5 HOH A1142 CRYST1 54.906 76.647 65.421 90.00 96.38 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018213 0.000000 0.002035 0.00000 SCALE2 0.000000 0.013047 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015381 0.00000