data_6V2R # _entry.id 6V2R # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.330 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6V2R WWPDB D_1000241476 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6V2R _pdbx_database_status.recvd_initial_deposition_date 2019-11-25 _pdbx_database_status.SG_entry Y _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Liu, Y.' 1 ? 'Tempel, W.' 2 ? 'Walker, J.R.' 3 ? 'Stuckey, J.I.' 4 ? 'Dickson, B.M.' 5 ? 'James, L.I.' 6 ? 'Frye, S.V.' 7 ? 'Bountra, C.' 8 ? 'Arrowsmith, C.H.' 9 ? 'Edwards, A.M.' 10 ? 'Min, J.' 11 ? 'Structural Genomics Consortium (SGC)' 12 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Cell Chem Biol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2451-9456 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 27 _citation.language ? _citation.page_first 827 _citation.page_last 838.e7 _citation.title 'Structural Basis for the Binding Selectivity of Human CDY Chromodomains.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.chembiol.2020.05.007 _citation.pdbx_database_id_PubMed 32470319 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dong, C.' 1 ? primary 'Liu, Y.' 2 ? primary 'Lyu, T.J.' 3 ? primary 'Beldar, S.' 4 ? primary 'Lamb, K.N.' 5 ? primary 'Tempel, W.' 6 ? primary 'Li, Y.' 7 ? primary 'Li, Z.' 8 ? primary 'James, L.I.' 9 ? primary 'Qin, S.' 10 ? primary 'Wang, Y.' 11 ? primary 'Min, J.' 12 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6V2R _cell.details ? _cell.formula_units_Z ? _cell.length_a 40.193 _cell.length_a_esd ? _cell.length_b 40.193 _cell.length_b_esd ? _cell.length_c 83.127 _cell.length_c_esd ? _cell.volume 134289.781 _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6V2R _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Chromobox protein homolog 7' 6788.799 1 ? V13A Chromodomain ? 2 polymer syn UNC3866 795.020 1 ? ? ? ? 3 non-polymer nat 'UNKNOWN ATOM OR ION' 89.093 17 ? ? ? ? 4 water nat water 18.015 54 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name CBX7 # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no GEQVFAAESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEKEE GEQVFAAESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEKEE A ? 2 'polypeptide(L)' no yes '(5R0)FAL(ELY)(5R5)' XFALXX B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLU n 1 3 GLN n 1 4 VAL n 1 5 PHE n 1 6 ALA n 1 7 ALA n 1 8 GLU n 1 9 SER n 1 10 ILE n 1 11 ARG n 1 12 LYS n 1 13 LYS n 1 14 ARG n 1 15 VAL n 1 16 ARG n 1 17 LYS n 1 18 GLY n 1 19 LYS n 1 20 VAL n 1 21 GLU n 1 22 TYR n 1 23 LEU n 1 24 VAL n 1 25 LYS n 1 26 TRP n 1 27 LYS n 1 28 GLY n 1 29 TRP n 1 30 PRO n 1 31 PRO n 1 32 LYS n 1 33 TYR n 1 34 SER n 1 35 THR n 1 36 TRP n 1 37 GLU n 1 38 PRO n 1 39 GLU n 1 40 GLU n 1 41 HIS n 1 42 ILE n 1 43 LEU n 1 44 ASP n 1 45 PRO n 1 46 ARG n 1 47 LEU n 1 48 VAL n 1 49 MET n 1 50 ALA n 1 51 TYR n 1 52 GLU n 1 53 GLU n 1 54 LYS n 1 55 GLU n 1 56 GLU n 2 1 5R0 n 2 2 PHE n 2 3 ALA n 2 4 LEU n 2 5 ELY n 2 6 5R5 n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 56 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene CBX7 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant -V2R-pRARE2 _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28-MHL _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP CBX7_HUMAN O95931 ? 1 GEQVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHILDPRLVMAYEEKEE 7 2 PDB 6V2R 6V2R ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6V2R A 1 ? 56 ? O95931 7 ? 62 ? 7 62 2 2 6V2R B 1 ? 6 ? 6V2R 1 ? 6 ? 1 6 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 6V2R _struct_ref_seq_dif.mon_id ALA _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 7 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code O95931 _struct_ref_seq_dif.db_mon_id VAL _struct_ref_seq_dif.pdbx_seq_db_seq_num 13 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 13 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5R0 non-polymer . '4-~{tert}-butylbenzoic acid' ? 'C11 H14 O2' 178.228 5R5 'L-peptide linking' n 'methyl L-serinate' 'methyl (2~{S})-2-azanyl-3-oxidanyl-propanoate' 'C4 H9 N O3' 119.119 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 ELY 'L-peptide linking' n N~6~,N~6~-diethyl-L-lysine '(2S)-2-azanyl-6-(diethylamino)hexanoic acid' 'C10 H22 N2 O2' 202.294 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNX non-polymer . 'UNKNOWN ATOM OR ION' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6V2R _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.4 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 48.0 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '1.5 M ammonium sulfate, 0.1 M bis-tris propane, pH 7' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RIGAKU SATURN A200' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-05-15 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU FR-E' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.5418 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate 15.94 _reflns.entry_id 6V2R _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.57 _reflns.d_resolution_low 23.46 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 10074 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100.0 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 12.9 _reflns.pdbx_Rmerge_I_obs 0.041 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 43.0 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.042 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.000 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split 8.62 23.46 ? ? ? ? ? ? 88 ? 96.6 ? ? ? 0.026 ? ? ? ? ? ? ? ? 8.3 ? ? ? 92.9 0.028 ? ? 1 ? 1.000 ? ? 1.57 1.60 ? ? ? ? ? ? 484 ? 100.0 ? ? ? 0.548 ? ? ? ? ? ? ? ? 12.6 ? ? ? 5.0 0.572 ? ? 2 ? 0.943 ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 20.16 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6V2R _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.60 _refine.ls_d_res_low 23.46 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 9550 _refine.ls_number_reflns_R_free 682 _refine.ls_number_reflns_R_work 8868 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.99 _refine.ls_percent_reflns_R_free 7.14 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1957 _refine.ls_R_factor_R_free 0.2354 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1928 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.37 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_starting_model 'isomorphous to PDB entry 5EPJ' _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 20.6482 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1378 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 23.46 _refine_hist.number_atoms_solvent 54 _refine_hist.number_atoms_total 573 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 502 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 17 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0137 ? 525 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.2733 ? 712 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0877 ? 72 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0102 ? 87 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 22.6598 ? 197 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.60 1.72 . . 152 1704 100.00 . . . 0.2237 . 0.1739 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.72 1.90 . . 142 1718 100.00 . . . 0.2031 . 0.1784 . . . . . . . . . . . 'X-RAY DIFFRACTION' 1.90 2.17 . . 124 1747 100.00 . . . 0.2076 . 0.1799 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.17 2.73 . . 118 1798 99.95 . . . 0.2533 . 0.2035 . . . . . . . . . . . 'X-RAY DIFFRACTION' 2.74 23.46 . . 146 1901 100.00 . . . 0.2478 . 0.1980 . . . . . . . . . . . # _struct.entry_id 6V2R _struct.title 'Crystal Structure of chromodomain of CBX7 mutant V13A in complex with inhibitor UNC3866' _struct.pdbx_descriptor 'Chromobox protein homolog 7, UNC3866' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6V2R _struct_keywords.text 'structural genomics, Structural Genomics Consortium, SGC, GENE REGULATION' _struct_keywords.pdbx_keywords 'GENE REGULATION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 3 ? Q N N 3 ? R N N 3 ? S N N 3 ? T N N 4 ? U N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PRO A 30 ? SER A 34 ? PRO A 36 SER A 40 5 ? 5 HELX_P HELX_P2 AA2 GLU A 40 ? ILE A 42 ? GLU A 46 ILE A 48 5 ? 3 HELX_P HELX_P3 AA3 ASP A 44 ? GLU A 56 ? ASP A 50 GLU A 62 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B 5R0 1 C1 ? ? ? 1_555 B PHE 2 N ? ? B 5R0 1 B PHE 2 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale2 covale both ? B LEU 4 C ? ? ? 1_555 B ELY 5 N ? ? B LEU 4 B ELY 5 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale3 covale both ? B ELY 5 C ? ? ? 1_555 B 5R5 6 N ? ? B ELY 5 B 5R5 6 1_555 ? ? ? ? ? ? ? 1.322 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 4 ? PHE A 5 ? VAL A 10 PHE A 11 AA1 2 ALA B 3 ? LEU B 4 ? ALA B 3 LEU B 4 AA2 1 ALA A 7 ? ARG A 16 ? ALA A 13 ARG A 22 AA2 2 LYS A 19 ? TRP A 26 ? LYS A 25 TRP A 32 AA2 3 THR A 35 ? PRO A 38 ? THR A 41 PRO A 44 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N PHE A 5 ? N PHE A 11 O ALA B 3 ? O ALA B 3 AA2 1 2 N ARG A 14 ? N ARG A 20 O GLU A 21 ? O GLU A 27 AA2 2 3 N VAL A 24 ? N VAL A 30 O THR A 35 ? O THR A 41 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id 5R0 _struct_site.pdbx_auth_seq_id 1 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 14 _struct_site.details 'binding site for UNC3866 chain B' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 14 GLN A 3 ? GLN A 9 . ? 1_555 ? 2 AC1 14 VAL A 4 ? VAL A 10 . ? 1_555 ? 3 AC1 14 PHE A 5 ? PHE A 11 . ? 1_555 ? 4 AC1 14 ALA A 6 ? ALA A 12 . ? 1_555 ? 5 AC1 14 ALA A 7 ? ALA A 13 . ? 1_555 ? 6 AC1 14 TRP A 26 ? TRP A 32 . ? 1_555 ? 7 AC1 14 GLY A 28 ? GLY A 34 . ? 7_555 ? 8 AC1 14 TRP A 29 ? TRP A 35 . ? 1_555 ? 9 AC1 14 GLU A 37 ? GLU A 43 . ? 1_555 ? 10 AC1 14 HIS A 41 ? HIS A 47 . ? 1_555 ? 11 AC1 14 LEU A 43 ? LEU A 49 . ? 1_555 ? 12 AC1 14 ASP A 44 ? ASP A 50 . ? 1_555 ? 13 AC1 14 ARG A 46 ? ARG A 52 . ? 1_555 ? 14 AC1 14 HOH T . ? HOH A 219 . ? 1_555 ? # _atom_sites.entry_id 6V2R _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.024880 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024880 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012030 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S X # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 7 ? ? ? A . n A 1 2 GLU 2 8 ? ? ? A . n A 1 3 GLN 3 9 9 GLN GLN A . n A 1 4 VAL 4 10 10 VAL VAL A . n A 1 5 PHE 5 11 11 PHE PHE A . n A 1 6 ALA 6 12 12 ALA ALA A . n A 1 7 ALA 7 13 13 ALA ALA A . n A 1 8 GLU 8 14 14 GLU GLU A . n A 1 9 SER 9 15 15 SER SER A . n A 1 10 ILE 10 16 16 ILE ILE A . n A 1 11 ARG 11 17 17 ARG ARG A . n A 1 12 LYS 12 18 18 LYS LYS A . n A 1 13 LYS 13 19 19 LYS LYS A . n A 1 14 ARG 14 20 20 ARG ARG A . n A 1 15 VAL 15 21 21 VAL VAL A . n A 1 16 ARG 16 22 22 ARG ARG A . n A 1 17 LYS 17 23 23 LYS LYS A . n A 1 18 GLY 18 24 24 GLY GLY A . n A 1 19 LYS 19 25 25 LYS LYS A . n A 1 20 VAL 20 26 26 VAL VAL A . n A 1 21 GLU 21 27 27 GLU GLU A . n A 1 22 TYR 22 28 28 TYR TYR A . n A 1 23 LEU 23 29 29 LEU LEU A . n A 1 24 VAL 24 30 30 VAL VAL A . n A 1 25 LYS 25 31 31 LYS LYS A . n A 1 26 TRP 26 32 32 TRP TRP A . n A 1 27 LYS 27 33 33 LYS LYS A . n A 1 28 GLY 28 34 34 GLY GLY A . n A 1 29 TRP 29 35 35 TRP TRP A . n A 1 30 PRO 30 36 36 PRO PRO A . n A 1 31 PRO 31 37 37 PRO PRO A . n A 1 32 LYS 32 38 38 LYS LYS A . n A 1 33 TYR 33 39 39 TYR TYR A . n A 1 34 SER 34 40 40 SER SER A . n A 1 35 THR 35 41 41 THR THR A . n A 1 36 TRP 36 42 42 TRP TRP A . n A 1 37 GLU 37 43 43 GLU GLU A . n A 1 38 PRO 38 44 44 PRO PRO A . n A 1 39 GLU 39 45 45 GLU GLU A . n A 1 40 GLU 40 46 46 GLU GLU A . n A 1 41 HIS 41 47 47 HIS HIS A . n A 1 42 ILE 42 48 48 ILE ILE A . n A 1 43 LEU 43 49 49 LEU LEU A . n A 1 44 ASP 44 50 50 ASP ASP A . n A 1 45 PRO 45 51 51 PRO PRO A . n A 1 46 ARG 46 52 52 ARG ARG A . n A 1 47 LEU 47 53 53 LEU LEU A . n A 1 48 VAL 48 54 54 VAL VAL A . n A 1 49 MET 49 55 55 MET MET A . n A 1 50 ALA 50 56 56 ALA ALA A . n A 1 51 TYR 51 57 57 TYR TYR A . n A 1 52 GLU 52 58 58 GLU GLU A . n A 1 53 GLU 53 59 59 GLU GLU A . n A 1 54 LYS 54 60 60 LYS LYS A . n A 1 55 GLU 55 61 61 GLU GLU A . n A 1 56 GLU 56 62 62 GLU GLU A . n B 2 1 5R0 1 1 1 5R0 5RX B . n B 2 2 PHE 2 2 1 PHE 5RX B . n B 2 3 ALA 3 3 2 ALA ALA B . n B 2 4 LEU 4 4 3 LEU LEU B . n B 2 5 ELY 5 5 4 ELY ELY B . n B 2 6 5R5 6 6 5 5R5 5R5 B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 UNX 1 101 1 UNX UNX A . D 3 UNX 1 102 3 UNX UNX A . E 3 UNX 1 103 4 UNX UNX A . F 3 UNX 1 104 5 UNX UNX A . G 3 UNX 1 105 6 UNX UNX A . H 3 UNX 1 106 7 UNX UNX A . I 3 UNX 1 107 8 UNX UNX A . J 3 UNX 1 108 9 UNX UNX A . K 3 UNX 1 109 10 UNX UNX A . L 3 UNX 1 110 11 UNX UNX A . M 3 UNX 1 111 13 UNX UNX A . N 3 UNX 1 112 14 UNX UNX A . O 3 UNX 1 113 15 UNX UNX A . P 3 UNX 1 114 16 UNX UNX A . Q 3 UNX 1 115 17 UNX UNX A . R 3 UNX 1 116 18 UNX UNX A . S 3 UNX 1 117 19 UNX UNX A . T 4 HOH 1 201 53 HOH HOH A . T 4 HOH 2 202 11 HOH HOH A . T 4 HOH 3 203 16 HOH HOH A . T 4 HOH 4 204 59 HOH HOH A . T 4 HOH 5 205 15 HOH HOH A . T 4 HOH 6 206 57 HOH HOH A . T 4 HOH 7 207 32 HOH HOH A . T 4 HOH 8 208 70 HOH HOH A . T 4 HOH 9 209 54 HOH HOH A . T 4 HOH 10 210 17 HOH HOH A . T 4 HOH 11 211 45 HOH HOH A . T 4 HOH 12 212 9 HOH HOH A . T 4 HOH 13 213 50 HOH HOH A . T 4 HOH 14 214 40 HOH HOH A . T 4 HOH 15 215 18 HOH HOH A . T 4 HOH 16 216 5 HOH HOH A . T 4 HOH 17 217 10 HOH HOH A . T 4 HOH 18 218 33 HOH HOH A . T 4 HOH 19 219 1 HOH HOH A . T 4 HOH 20 220 51 HOH HOH A . T 4 HOH 21 221 2 HOH HOH A . T 4 HOH 22 222 34 HOH HOH A . T 4 HOH 23 223 3 HOH HOH A . T 4 HOH 24 224 30 HOH HOH A . T 4 HOH 25 225 49 HOH HOH A . T 4 HOH 26 226 47 HOH HOH A . T 4 HOH 27 227 31 HOH HOH A . T 4 HOH 28 228 36 HOH HOH A . T 4 HOH 29 229 14 HOH HOH A . T 4 HOH 30 230 4 HOH HOH A . T 4 HOH 31 231 13 HOH HOH A . T 4 HOH 32 232 56 HOH HOH A . T 4 HOH 33 233 69 HOH HOH A . T 4 HOH 34 234 74 HOH HOH A . T 4 HOH 35 235 8 HOH HOH A . T 4 HOH 36 236 67 HOH HOH A . T 4 HOH 37 237 52 HOH HOH A . T 4 HOH 38 238 22 HOH HOH A . T 4 HOH 39 239 58 HOH HOH A . T 4 HOH 40 240 68 HOH HOH A . T 4 HOH 41 241 73 HOH HOH A . T 4 HOH 42 242 26 HOH HOH A . T 4 HOH 43 243 19 HOH HOH A . T 4 HOH 44 244 71 HOH HOH A . T 4 HOH 45 245 37 HOH HOH A . T 4 HOH 46 246 64 HOH HOH A . T 4 HOH 47 247 23 HOH HOH A . T 4 HOH 48 248 61 HOH HOH A . T 4 HOH 49 249 60 HOH HOH A . T 4 HOH 50 250 72 HOH HOH A . T 4 HOH 51 251 66 HOH HOH A . T 4 HOH 52 252 65 HOH HOH A . U 4 HOH 1 101 76 HOH HOH B . U 4 HOH 2 102 75 HOH HOH B . # _pdbx_molecule_features.prd_id PRD_002208 _pdbx_molecule_features.name UNC3866 _pdbx_molecule_features.type Oligopeptide _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_002208 _pdbx_molecule.asym_id B # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1250 ? 1 MORE -7 ? 1 'SSA (A^2)' 4400 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-12-25 2 'Structure model' 1 1 2020-06-17 3 'Structure model' 1 2 2020-07-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.pdbx_database_id_DOI' 6 2 'Structure model' '_citation.pdbx_database_id_PubMed' 7 2 'Structure model' '_citation.title' 8 2 'Structure model' '_citation.year' 9 2 'Structure model' '_citation_author.name' 10 3 'Structure model' '_citation.journal_volume' 11 3 'Structure model' '_citation.page_first' 12 3 'Structure model' '_citation.page_last' # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 19.8218442535 29.7317753454 3.1045876558 0.131311801196 ? -0.0166391122785 ? 0.0123717980771 ? 0.145432359021 ? -0.00903108538103 ? 0.102940054388 ? 4.63298593417 ? -1.56767583889 ? -0.0910248122183 ? 6.23773960774 ? 0.10427916898 ? 3.3914329983 ? 0.08346102947 ? 0.256589509587 ? -0.175260399488 ? -0.254008894767 ? -0.139830704748 ? -0.31478903451 ? 0.0533408901615 ? -0.0616834304757 ? 0.0265675803126 ? 2 'X-RAY DIFFRACTION' ? refined 14.2160864141 33.7254484683 0.77423805067 0.129245355664 ? 0.0207961105592 ? -0.00162975269495 ? 0.137302983574 ? 0.00155953984579 ? 0.130358193883 ? 2.64591539652 ? -1.71287096125 ? -1.41637833924 ? 2.88053735731 ? 1.19331856767 ? 2.47322806376 ? 0.0403896176522 ? 0.106903486276 ? -0.0521708073228 ? -0.112693548204 ? -0.125061024835 ? 0.170937179658 ? -0.00579109404938 ? -0.14969767992 ? 0.0862458085164 ? 3 'X-RAY DIFFRACTION' ? refined 12.3448186484 30.5368942714 7.4525250802 0.135825225225 ? 0.00103726623629 ? 0.039634897493 ? 0.136488325062 ? -0.00284493589597 ? 0.133515397184 ? 2.49988804385 ? -0.17525793457 ? 1.43934441551 ? 2.86968069474 ? -0.811779291393 ? 3.93486443737 ? 0.18980666747 ? -0.309215452937 ? 0.0381538244289 ? 0.293994074349 ? -0.0391379070317 ? 0.264512333967 ? -0.174246350578 ? -0.478743684059 ? -0.140586490674 ? 4 'X-RAY DIFFRACTION' ? refined 19.9372313018 40.3137893022 11.0597008247 0.191143625778 ? -0.0233003360043 ? -0.0360333652905 ? 0.16297631172 ? -0.00521647790686 ? 0.232603005686 ? 6.12943628554 ? -1.04568464675 ? 1.12398986389 ? 5.04894343384 ? -0.637045772457 ? 5.83937101734 ? -0.178277843795 ? 0.0255429850457 ? 0.886897653797 ? 0.222547617921 ? -0.129459370721 ? -0.0918761354904 ? -0.674031681285 ? -0.00107327697516 ? 0.244284302075 ? 5 'X-RAY DIFFRACTION' ? refined 15.1836406918 25.0431220751 6.63967330236 0.103256325467 ? -0.0099377511325 ? -0.0136605099699 ? 0.107774370117 ? 0.00687983063897 ? 0.189364013901 ? 9.92253731258 ? 7.85321531933 ? -2.72899403725 ? 7.09325111444 ? -2.86515796858 ? 6.60891160029 ? -0.106290076639 ? -0.0434574502425 ? -0.256606695856 ? 0.0540257979076 ? 0.0269662193621 ? 0.140531289886 ? 0.123705762748 ? -0.0544825875528 ? 0.0682155590321 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 9 through 17 ) ; 2 'X-RAY DIFFRACTION' 2 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 18 through 40 ) ; 3 'X-RAY DIFFRACTION' 3 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 41 through 50 ) ; 4 'X-RAY DIFFRACTION' 4 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 51 through 62 ) ; 5 'X-RAY DIFFRACTION' 5 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 3 through 4 ) ; # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.17.1_3660 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.5.27 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.20 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? . 5 # _pdbx_entry_details.entry_id 6V2R _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 9 ? CG ? A GLN 3 CG 2 1 Y 1 A GLN 9 ? CD ? A GLN 3 CD 3 1 Y 1 A GLN 9 ? OE1 ? A GLN 3 OE1 4 1 Y 1 A GLN 9 ? NE2 ? A GLN 3 NE2 5 1 Y 1 A ARG 22 ? CD ? A ARG 16 CD 6 1 Y 1 A ARG 22 ? NE ? A ARG 16 NE 7 1 Y 1 A ARG 22 ? CZ ? A ARG 16 CZ 8 1 Y 1 A ARG 22 ? NH1 ? A ARG 16 NH1 9 1 Y 1 A ARG 22 ? NH2 ? A ARG 16 NH2 10 1 Y 1 A LYS 23 ? CD ? A LYS 17 CD 11 1 Y 1 A LYS 23 ? CE ? A LYS 17 CE 12 1 Y 1 A LYS 23 ? NZ ? A LYS 17 NZ 13 1 Y 1 A LYS 25 ? CD ? A LYS 19 CD 14 1 Y 1 A LYS 25 ? CE ? A LYS 19 CE 15 1 Y 1 A LYS 25 ? NZ ? A LYS 19 NZ 16 1 Y 1 A LYS 60 ? CD ? A LYS 54 CD 17 1 Y 1 A LYS 60 ? CE ? A LYS 54 CE 18 1 Y 1 A LYS 60 ? NZ ? A LYS 54 NZ 19 1 Y 1 A GLU 61 ? CG ? A GLU 55 CG 20 1 Y 1 A GLU 61 ? CD ? A GLU 55 CD 21 1 Y 1 A GLU 61 ? OE1 ? A GLU 55 OE1 22 1 Y 1 A GLU 61 ? OE2 ? A GLU 55 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 7 ? A GLY 1 2 1 Y 1 A GLU 8 ? A GLU 2 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'UNKNOWN ATOM OR ION' UNX 4 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support homology _pdbx_struct_assembly_auth_evidence.details ? #