HEADER GENE REGULATION 25-NOV-19 6V2S TITLE CRYSTAL STRUCTURE OF CHROMODOMAIN OF MPP8 IN COMPLEX WITH INHIBITOR TITLE 2 UNC3866 COMPND MOL_ID: 1; COMPND 2 MOLECULE: M-PHASE PHOSPHOPROTEIN 8; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CHROMODOMAIN; COMPND 5 SYNONYM: TWO HYBRID-ASSOCIATED PROTEIN 3 WITH RANBPM,TWA3; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: UNC3866; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MPHOSPH8, MPP8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: -V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28-MHL; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, GENE KEYWDS 2 REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR Y.LIU,W.TEMPEL,J.R.WALKER,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS,J.MIN, AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 11-OCT-23 6V2S 1 REMARK REVDAT 3 29-JUL-20 6V2S 1 JRNL REVDAT 2 17-JUN-20 6V2S 1 JRNL REVDAT 1 25-DEC-19 6V2S 0 JRNL AUTH C.DONG,Y.LIU,T.J.LYU,S.BELDAR,K.N.LAMB,W.TEMPEL,Y.LI,Z.LI, JRNL AUTH 2 L.I.JAMES,S.QIN,Y.WANG,J.MIN JRNL TITL STRUCTURAL BASIS FOR THE BINDING SELECTIVITY OF HUMAN CDY JRNL TITL 2 CHROMODOMAINS. JRNL REF CELL CHEM BIOL V. 27 827 2020 JRNL REFN ESSN 2451-9456 JRNL PMID 32470319 JRNL DOI 10.1016/J.CHEMBIOL.2020.05.007 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 19816 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.740 REMARK 3 FREE R VALUE TEST SET COUNT : 940 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.1200 - 3.0600 1.00 2866 128 0.1944 0.2144 REMARK 3 2 3.0600 - 2.4300 1.00 2709 156 0.2188 0.2497 REMARK 3 3 2.4300 - 2.1200 1.00 2724 114 0.2225 0.2395 REMARK 3 4 2.1200 - 1.9300 1.00 2661 159 0.2075 0.3010 REMARK 3 5 1.9300 - 1.7900 1.00 2698 87 0.2090 0.2515 REMARK 3 6 1.7900 - 1.6800 0.99 2680 85 0.2179 0.2773 REMARK 3 7 1.6800 - 1.6000 0.99 2538 211 0.2341 0.2692 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.195 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.961 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 1161 REMARK 3 ANGLE : 1.303 1566 REMARK 3 CHIRALITY : 0.077 163 REMARK 3 PLANARITY : 0.009 196 REMARK 3 DIHEDRAL : 24.294 452 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 56 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.6540 -1.4329 1.8447 REMARK 3 T TENSOR REMARK 3 T11: 0.4617 T22: 0.3549 REMARK 3 T33: 0.5233 T12: 0.0791 REMARK 3 T13: -0.0543 T23: 0.0346 REMARK 3 L TENSOR REMARK 3 L11: 2.0517 L22: 0.1333 REMARK 3 L33: 3.8946 L12: 0.3502 REMARK 3 L13: 2.8061 L23: 0.5584 REMARK 3 S TENSOR REMARK 3 S11: 0.2607 S12: 0.0621 S13: -0.5879 REMARK 3 S21: -0.1032 S22: -0.3236 S23: -1.5273 REMARK 3 S31: 0.0667 S32: 0.8135 S33: -0.1749 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.1146 6.3696 1.4868 REMARK 3 T TENSOR REMARK 3 T11: 0.1729 T22: 0.1854 REMARK 3 T33: 0.1583 T12: -0.0101 REMARK 3 T13: -0.0045 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 3.2581 L22: 2.9223 REMARK 3 L33: 3.5216 L12: 0.2173 REMARK 3 L13: 1.3414 L23: 0.3377 REMARK 3 S TENSOR REMARK 3 S11: -0.0081 S12: -0.2991 S13: -0.0604 REMARK 3 S21: 0.2102 S22: -0.0878 S23: 0.0506 REMARK 3 S31: 0.1043 S32: 0.0185 S33: 0.1466 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 89 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2421 5.8870 -5.4919 REMARK 3 T TENSOR REMARK 3 T11: 0.2276 T22: 0.2492 REMARK 3 T33: 0.2786 T12: 0.0087 REMARK 3 T13: 0.0307 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 3.1391 L22: 3.6134 REMARK 3 L33: 4.3104 L12: 0.7053 REMARK 3 L13: 1.3214 L23: 1.3560 REMARK 3 S TENSOR REMARK 3 S11: 0.3025 S12: 0.3478 S13: -0.1714 REMARK 3 S21: -0.4085 S22: 0.1489 S23: -0.6206 REMARK 3 S31: -0.0047 S32: 0.5720 S33: -0.3777 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 100 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.1535 3.1608 -7.9510 REMARK 3 T TENSOR REMARK 3 T11: 0.1590 T22: 0.1929 REMARK 3 T33: 0.1413 T12: -0.0392 REMARK 3 T13: 0.0059 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 4.8986 L22: 4.3717 REMARK 3 L33: 3.3189 L12: -2.0287 REMARK 3 L13: 0.4865 L23: 1.1740 REMARK 3 S TENSOR REMARK 3 S11: -0.0794 S12: -0.1188 S13: -0.1569 REMARK 3 S21: 0.3735 S22: 0.0898 S23: 0.1506 REMARK 3 S31: 0.4168 S32: -0.3434 S33: -0.0010 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 57 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.6968 -8.0632 11.4128 REMARK 3 T TENSOR REMARK 3 T11: 0.1740 T22: 0.1932 REMARK 3 T33: 0.1992 T12: 0.0048 REMARK 3 T13: 0.0812 T23: 0.0260 REMARK 3 L TENSOR REMARK 3 L11: 2.4256 L22: 3.2304 REMARK 3 L33: 4.7904 L12: 0.7978 REMARK 3 L13: 0.2937 L23: 0.3745 REMARK 3 S TENSOR REMARK 3 S11: -0.1352 S12: 0.1460 S13: -0.3262 REMARK 3 S21: -0.5308 S22: 0.0710 S23: -0.2099 REMARK 3 S31: 0.0661 S32: 0.3160 S33: -0.1797 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 73 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.0659 -2.7045 10.6100 REMARK 3 T TENSOR REMARK 3 T11: 0.1546 T22: 0.1529 REMARK 3 T33: 0.1829 T12: 0.0173 REMARK 3 T13: 0.0546 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 2.5277 L22: 4.8127 REMARK 3 L33: 3.8384 L12: 1.0894 REMARK 3 L13: -0.3560 L23: -0.9719 REMARK 3 S TENSOR REMARK 3 S11: 0.1266 S12: -0.0301 S13: 0.0326 REMARK 3 S21: -0.2145 S22: -0.0945 S23: -0.3007 REMARK 3 S31: -0.1093 S32: 0.2183 S33: -0.0620 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 89 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.0672 -10.6628 15.6508 REMARK 3 T TENSOR REMARK 3 T11: 0.1969 T22: 0.1584 REMARK 3 T33: 0.2195 T12: 0.0313 REMARK 3 T13: 0.0154 T23: 0.0197 REMARK 3 L TENSOR REMARK 3 L11: 2.2549 L22: 2.7774 REMARK 3 L33: 6.2972 L12: -0.5102 REMARK 3 L13: 0.8089 L23: -0.5007 REMARK 3 S TENSOR REMARK 3 S11: -0.0457 S12: -0.1039 S13: -0.2406 REMARK 3 S21: -0.0011 S22: -0.0446 S23: -0.3682 REMARK 3 S31: 0.8237 S32: 0.2890 S33: 0.0222 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 100 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.2387 -15.2978 10.0282 REMARK 3 T TENSOR REMARK 3 T11: 0.4165 T22: 0.4303 REMARK 3 T33: 0.2525 T12: -0.2063 REMARK 3 T13: -0.0406 T23: 0.0164 REMARK 3 L TENSOR REMARK 3 L11: 0.6856 L22: 2.4254 REMARK 3 L33: 4.4398 L12: -0.7113 REMARK 3 L13: 1.5310 L23: 0.1533 REMARK 3 S TENSOR REMARK 3 S11: 0.6349 S12: -0.6181 S13: -0.2279 REMARK 3 S21: -0.3125 S22: -0.0772 S23: 0.3309 REMARK 3 S31: 0.8597 S32: -1.3305 S33: 0.1539 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 3 THROUGH 4 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.7056 2.4937 -2.6844 REMARK 3 T TENSOR REMARK 3 T11: 0.5759 T22: 0.3784 REMARK 3 T33: 0.3849 T12: 0.0772 REMARK 3 T13: 0.0928 T23: -0.0507 REMARK 3 L TENSOR REMARK 3 L11: 7.5102 L22: 6.6208 REMARK 3 L33: 2.5038 L12: 6.0408 REMARK 3 L13: -2.3149 L23: -0.6779 REMARK 3 S TENSOR REMARK 3 S11: 0.2151 S12: 0.0039 S13: 0.3586 REMARK 3 S21: -0.2416 S22: -0.2056 S23: -0.8192 REMARK 3 S31: 0.6336 S32: 0.6726 S33: -0.2346 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 3 THROUGH 4 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.2918 -6.7964 19.7776 REMARK 3 T TENSOR REMARK 3 T11: -0.0163 T22: 0.4628 REMARK 3 T33: 0.2341 T12: 0.0711 REMARK 3 T13: -0.0566 T23: 0.0675 REMARK 3 L TENSOR REMARK 3 L11: 1.2962 L22: 8.2645 REMARK 3 L33: 4.2113 L12: -0.6772 REMARK 3 L13: -2.0530 L23: 0.9971 REMARK 3 S TENSOR REMARK 3 S11: 0.2010 S12: -0.1722 S13: -0.2124 REMARK 3 S21: 0.2711 S22: 0.1044 S23: -0.7609 REMARK 3 S31: 0.4598 S32: 0.4767 S33: -0.1270 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6V2S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1000241477. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN A200 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20834 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.570 REMARK 200 RESOLUTION RANGE LOW (A) : 24.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 8.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 24.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.01800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3R93 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 4K, 0.2 M MAGNESIUM CHLORIDE, REMARK 280 0.1 M TRIS HYDROCHLORIDE, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.34850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.89050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.52150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.89050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.34850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.52150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THE UNC3866 IS OLIGOPEPTIDE, A MEMBER OF INHIBITOR CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: UNC3866 REMARK 400 CHAIN: C, D REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 55 REMARK 465 LYS A 116 REMARK 465 GLY B 55 REMARK 465 GLU B 56 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 94 CG1 CD1 REMARK 470 LYS A 100 NZ REMARK 470 LYS A 108 NZ REMARK 470 ALA A 115 C O CB REMARK 470 LYS B 73 CG CD CE NZ REMARK 470 ILE B 94 CG2 CD1 REMARK 470 GLU B 97 CD OE1 OE2 REMARK 470 LYS B 100 NZ REMARK 470 LYS B 108 CG CD CE NZ REMARK 470 LYS B 116 NZ REMARK 470 ELY C 5 CT1 REMARK 470 5R5 C 6 C1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE D 2 CB - CG - CD2 ANGL. DEV. = -5.3 DEGREES REMARK 500 PHE D 2 CB - CG - CD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 62 -61.82 -99.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for UNC3866 chain C REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for UNC3866 chain D REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3R93 RELATED DB: PDB DBREF 6V2S A 55 116 UNP Q99549 MPP8_HUMAN 55 116 DBREF 6V2S B 55 116 UNP Q99549 MPP8_HUMAN 55 116 DBREF 6V2S C 1 6 PDB 6V2S 6V2S 1 6 DBREF 6V2S D 1 6 PDB 6V2S 6V2S 1 6 SEQRES 1 A 62 GLY GLU ASP VAL PHE GLU VAL GLU LYS ILE LEU ASP MET SEQRES 2 A 62 LYS THR GLU GLY GLY LYS VAL LEU TYR LYS VAL ARG TRP SEQRES 3 A 62 LYS GLY TYR THR SER ASP ASP ASP THR TRP GLU PRO GLU SEQRES 4 A 62 ILE HIS LEU GLU ASP CYS LYS GLU VAL LEU LEU GLU PHE SEQRES 5 A 62 ARG LYS LYS ILE ALA GLU ASN LYS ALA LYS SEQRES 1 B 62 GLY GLU ASP VAL PHE GLU VAL GLU LYS ILE LEU ASP MET SEQRES 2 B 62 LYS THR GLU GLY GLY LYS VAL LEU TYR LYS VAL ARG TRP SEQRES 3 B 62 LYS GLY TYR THR SER ASP ASP ASP THR TRP GLU PRO GLU SEQRES 4 B 62 ILE HIS LEU GLU ASP CYS LYS GLU VAL LEU LEU GLU PHE SEQRES 5 B 62 ARG LYS LYS ILE ALA GLU ASN LYS ALA LYS SEQRES 1 C 6 5R0 PHE ALA LEU ELY 5R5 SEQRES 1 D 6 5R0 PHE ALA LEU ELY 5R5 HET 5R0 C 1 12 HET ELY C 5 12 HET 5R5 C 6 7 HET 5R0 D 1 12 HET ELY D 5 21 HET 5R5 D 6 8 HET UNX A 201 1 HET UNX A 202 1 HET UNX A 203 1 HET UNX A 204 1 HET UNX A 205 1 HET UNX A 206 1 HET UNX A 207 1 HET UNX A 208 1 HET UNX B 201 1 HET UNX B 202 1 HET UNX B 203 1 HET UNX B 204 1 HET UNX B 205 1 HET UNX B 206 1 HET UNX B 207 1 HET UNX B 208 1 HET UNX B 209 1 HET UNX B 210 1 HET UNX D 101 1 HETNAM 5R0 4-~{TERT}-BUTYLBENZOIC ACID HETNAM ELY N~6~,N~6~-DIETHYL-L-LYSINE HETNAM 5R5 METHYL L-SERINATE HETNAM UNX UNKNOWN ATOM OR ION HETSYN ELY (2S)-2-AZANYL-6-(DIETHYLAMINO)HEXANOIC ACID HETSYN 5R5 METHYL (2~{S})-2-AZANYL-3-OXIDANYL-PROPANOATE FORMUL 3 5R0 2(C11 H14 O2) FORMUL 3 ELY 2(C10 H22 N2 O2) FORMUL 3 5R5 2(C4 H9 N O3) FORMUL 5 UNX 19(X) FORMUL 24 HOH *80(H2 O) HELIX 1 AA1 THR A 84 ASP A 88 5 5 HELIX 2 AA2 ILE A 94 GLU A 97 5 4 HELIX 3 AA3 CYS A 99 ALA A 115 1 17 HELIX 4 AA4 THR B 84 ASP B 88 5 5 HELIX 5 AA5 ILE B 94 ASP B 98 5 5 HELIX 6 AA6 CYS B 99 LYS B 116 1 18 SHEET 1 AA1 2 VAL A 58 PHE A 59 0 SHEET 2 AA1 2 ALA C 3 LEU C 4 -1 O ALA C 3 N PHE A 59 SHEET 1 AA2 3 VAL A 61 GLU A 70 0 SHEET 2 AA2 3 LYS A 73 TRP A 80 -1 O LEU A 75 N LYS A 68 SHEET 3 AA2 3 THR A 89 PRO A 92 -1 O GLU A 91 N TYR A 76 SHEET 1 AA3 2 VAL B 58 PHE B 59 0 SHEET 2 AA3 2 ALA D 3 LEU D 4 -1 O ALA D 3 N PHE B 59 SHEET 1 AA4 3 VAL B 61 GLU B 70 0 SHEET 2 AA4 3 LYS B 73 TRP B 80 -1 O LYS B 77 N LEU B 65 SHEET 3 AA4 3 THR B 89 PRO B 92 -1 O THR B 89 N VAL B 78 LINK C1 5R0 C 1 N PHE C 2 1555 1555 1.33 LINK C LEU C 4 N ELY C 5 1555 1555 1.31 LINK C ELY C 5 N 5R5 C 6 1555 1555 1.32 LINK C1 5R0 D 1 N PHE D 2 1555 1555 1.34 LINK C LEU D 4 N ELY D 5 1555 1555 1.33 LINK C ELY D 5 N 5R5 D 6 1555 1555 1.32 SITE 1 AC1 17 VAL A 58 PHE A 59 GLU A 60 VAL A 61 SITE 2 AC1 17 TRP A 80 TYR A 83 GLU A 91 HIS A 95 SITE 3 AC1 17 GLU A 101 HOH A 321 MET B 67 LYS B 68 SITE 4 AC1 17 THR B 69 ARG B 107 ALA B 111 HOH C 101 SITE 5 AC1 17 HOH C 102 SITE 1 AC2 16 LEU A 104 ARG A 107 LYS A 108 ASP B 57 SITE 2 AC2 16 VAL B 58 PHE B 59 GLU B 60 VAL B 61 SITE 3 AC2 16 TRP B 80 TYR B 83 ASP B 87 GLU B 91 SITE 4 AC2 16 HIS B 95 ASP B 98 CYS B 99 HOH B 310 CRYST1 38.697 51.043 73.781 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025842 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019591 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013554 0.00000