HEADER HYDROLASE 26-NOV-19 6V3Q TITLE CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE FIM-1 FROM PSEUDOMONAS TITLE 2 AERUGINOSA IN THE MONO-ZINC FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLO-BETA-LACTAMASE FIM-1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: BLAFIM-1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: GOLD KEYWDS LACTAM ANTIBIOTICS, STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS OF INFECTIOUS DISEASES, CSGID, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,C.HATZOS-SKINTGES,M.ENDRES,A.JOACHIMIAK,CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 2 03-APR-24 6V3Q 1 REMARK REVDAT 1 15-JAN-20 6V3Q 0 JRNL AUTH Y.KIM,C.HATZOS-SKINTGES,M.ENDRES,A.JOACHIMIAK, JRNL AUTH 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 3 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE FIM-1 FROM JRNL TITL 2 PSEUDOMONAS AERUGINOSA IN THE MONO-ZINC FORM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 29638 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.250 REMARK 3 FREE R VALUE TEST SET COUNT : 1557 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.9300 - 5.3300 0.99 2548 134 0.1299 0.1529 REMARK 3 2 5.3300 - 4.2300 0.99 2502 185 0.1220 0.1507 REMARK 3 3 4.2300 - 3.7000 0.99 2603 105 0.1444 0.1513 REMARK 3 4 3.7000 - 3.3600 0.99 2579 110 0.1692 0.1752 REMARK 3 5 3.3600 - 3.1200 1.00 2523 162 0.1911 0.2076 REMARK 3 6 3.1200 - 2.9300 1.00 2578 118 0.2136 0.2604 REMARK 3 7 2.9300 - 2.7900 1.00 2572 140 0.2272 0.2949 REMARK 3 8 2.7900 - 2.6700 0.99 2590 122 0.2485 0.2707 REMARK 3 9 2.6700 - 2.5600 0.99 2518 176 0.2605 0.2721 REMARK 3 10 2.5600 - 2.4700 1.00 2541 170 0.2704 0.2785 REMARK 3 11 2.4700 - 2.4000 0.98 2527 135 0.2856 0.3084 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.307 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.986 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 60.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3587 REMARK 3 ANGLE : 0.570 4903 REMARK 3 CHIRALITY : 0.047 548 REMARK 3 PLANARITY : 0.004 642 REMARK 3 DIHEDRAL : 16.356 2118 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.4497 16.8250 -11.2028 REMARK 3 T TENSOR REMARK 3 T11: 0.5661 T22: 0.8074 REMARK 3 T33: 0.5353 T12: -0.0651 REMARK 3 T13: -0.0866 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 1.1451 L22: 6.9326 REMARK 3 L33: 5.9347 L12: -1.6547 REMARK 3 L13: 2.1091 L23: 0.0005 REMARK 3 S TENSOR REMARK 3 S11: -0.8022 S12: 1.7222 S13: -0.1795 REMARK 3 S21: -1.0614 S22: 1.0257 S23: 0.5932 REMARK 3 S31: 0.1679 S32: -0.5358 S33: -0.2293 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.1940 15.2596 -3.4801 REMARK 3 T TENSOR REMARK 3 T11: 0.6035 T22: 0.7835 REMARK 3 T33: 0.7205 T12: -0.1083 REMARK 3 T13: -0.0841 T23: 0.0483 REMARK 3 L TENSOR REMARK 3 L11: 3.2439 L22: 2.0551 REMARK 3 L33: 2.6484 L12: 0.6832 REMARK 3 L13: -2.2160 L23: -0.4347 REMARK 3 S TENSOR REMARK 3 S11: 0.0523 S12: 0.3087 S13: -0.5997 REMARK 3 S21: 0.2386 S22: 0.0420 S23: 0.2801 REMARK 3 S31: -0.0595 S32: -0.5598 S33: -0.0575 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.3598 13.1724 -8.3312 REMARK 3 T TENSOR REMARK 3 T11: 0.5865 T22: 0.5987 REMARK 3 T33: 0.4641 T12: -0.1319 REMARK 3 T13: 0.0298 T23: -0.0222 REMARK 3 L TENSOR REMARK 3 L11: 1.9755 L22: 3.8029 REMARK 3 L33: 5.1589 L12: -0.4897 REMARK 3 L13: 0.2434 L23: 1.3131 REMARK 3 S TENSOR REMARK 3 S11: -0.1587 S12: 0.4468 S13: -0.3919 REMARK 3 S21: -0.3203 S22: 0.1433 S23: 0.1014 REMARK 3 S31: 0.5931 S32: -0.0504 S33: 0.0555 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.2872 10.6541 -3.0986 REMARK 3 T TENSOR REMARK 3 T11: 0.6561 T22: 0.6239 REMARK 3 T33: 0.6211 T12: -0.0662 REMARK 3 T13: 0.0502 T23: -0.0528 REMARK 3 L TENSOR REMARK 3 L11: 4.1952 L22: 4.4678 REMARK 3 L33: 4.9335 L12: 0.7352 REMARK 3 L13: 2.8529 L23: -0.2870 REMARK 3 S TENSOR REMARK 3 S11: 0.2747 S12: 0.1505 S13: -0.5911 REMARK 3 S21: 0.1006 S22: -0.2834 S23: -0.2256 REMARK 3 S31: 0.9000 S32: -0.1361 S33: 0.0375 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.6892 9.5403 9.6595 REMARK 3 T TENSOR REMARK 3 T11: 1.0607 T22: 0.7329 REMARK 3 T33: 0.7282 T12: -0.0535 REMARK 3 T13: -0.0328 T23: 0.0622 REMARK 3 L TENSOR REMARK 3 L11: 4.2317 L22: 4.2244 REMARK 3 L33: 7.5594 L12: 4.1714 REMARK 3 L13: -1.4628 L23: -1.7842 REMARK 3 S TENSOR REMARK 3 S11: 0.2440 S12: -1.1184 S13: -0.4429 REMARK 3 S21: 1.3465 S22: -0.7537 S23: -0.0701 REMARK 3 S31: 0.6153 S32: -0.0023 S33: 0.5155 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 121 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.1300 22.8089 5.9577 REMARK 3 T TENSOR REMARK 3 T11: 0.5752 T22: 0.5492 REMARK 3 T33: 0.5198 T12: -0.0719 REMARK 3 T13: -0.0401 T23: 0.0604 REMARK 3 L TENSOR REMARK 3 L11: 5.1046 L22: 4.1347 REMARK 3 L33: 9.6839 L12: -2.8759 REMARK 3 L13: -1.4779 L23: 3.2961 REMARK 3 S TENSOR REMARK 3 S11: 0.0454 S12: -0.4811 S13: -0.2383 REMARK 3 S21: 0.4058 S22: -0.0493 S23: -0.3493 REMARK 3 S31: -0.3216 S32: 0.9960 S33: -0.0668 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 148 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.4954 30.4902 5.4904 REMARK 3 T TENSOR REMARK 3 T11: 0.4483 T22: 0.4796 REMARK 3 T33: 0.5016 T12: -0.0950 REMARK 3 T13: -0.0047 T23: 0.0273 REMARK 3 L TENSOR REMARK 3 L11: 3.5855 L22: 4.1445 REMARK 3 L33: 5.8419 L12: -1.8411 REMARK 3 L13: -0.2835 L23: 2.7710 REMARK 3 S TENSOR REMARK 3 S11: 0.0144 S12: 0.0042 S13: 0.0253 REMARK 3 S21: 0.2681 S22: -0.0765 S23: 0.2266 REMARK 3 S31: 0.2459 S32: -0.3422 S33: 0.0937 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5954 20.1687 -11.2308 REMARK 3 T TENSOR REMARK 3 T11: 0.6391 T22: 0.8803 REMARK 3 T33: 0.6324 T12: -0.0994 REMARK 3 T13: 0.0286 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 1.6223 L22: 6.2509 REMARK 3 L33: 5.1066 L12: -1.4237 REMARK 3 L13: -2.4044 L23: -0.3316 REMARK 3 S TENSOR REMARK 3 S11: -0.8536 S12: 1.5053 S13: -0.2599 REMARK 3 S21: -0.9362 S22: 1.0849 S23: -0.7337 REMARK 3 S31: -0.3734 S32: 0.7354 S33: -0.1874 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 16 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.8539 21.7373 -3.4710 REMARK 3 T TENSOR REMARK 3 T11: 0.5974 T22: 0.7984 REMARK 3 T33: 0.7276 T12: -0.1468 REMARK 3 T13: 0.0937 T23: -0.0788 REMARK 3 L TENSOR REMARK 3 L11: 3.4993 L22: 2.5835 REMARK 3 L33: 2.3352 L12: 1.8032 REMARK 3 L13: 2.4933 L23: 0.8960 REMARK 3 S TENSOR REMARK 3 S11: 0.2581 S12: 0.3102 S13: 0.5627 REMARK 3 S21: 0.3316 S22: -0.0885 S23: -0.2558 REMARK 3 S31: 0.0903 S32: 0.5181 S33: 0.0171 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 30 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7600 20.9765 -6.5899 REMARK 3 T TENSOR REMARK 3 T11: 0.5728 T22: 0.5468 REMARK 3 T33: 0.4242 T12: -0.0866 REMARK 3 T13: 0.0101 T23: 0.0328 REMARK 3 L TENSOR REMARK 3 L11: 7.8852 L22: 4.5607 REMARK 3 L33: 5.2277 L12: -0.1097 REMARK 3 L13: 0.2991 L23: -1.0227 REMARK 3 S TENSOR REMARK 3 S11: -0.0169 S12: 0.8329 S13: 0.3771 REMARK 3 S21: -0.3395 S22: 0.1638 S23: 0.0741 REMARK 3 S31: -0.3581 S32: 0.1404 S33: 0.0241 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 53 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.1637 28.4859 -11.1877 REMARK 3 T TENSOR REMARK 3 T11: 0.7866 T22: 0.6928 REMARK 3 T33: 0.6357 T12: -0.1674 REMARK 3 T13: -0.0623 T23: 0.0702 REMARK 3 L TENSOR REMARK 3 L11: 7.9554 L22: 7.4451 REMARK 3 L33: 8.3040 L12: 0.8148 REMARK 3 L13: 0.3955 L23: 0.4066 REMARK 3 S TENSOR REMARK 3 S11: -0.6837 S12: 0.5760 S13: 0.8706 REMARK 3 S21: -0.8542 S22: 0.1183 S23: 0.0437 REMARK 3 S31: -1.4073 S32: 0.0164 S33: 0.0704 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 66 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7779 26.3011 -3.0954 REMARK 3 T TENSOR REMARK 3 T11: 0.5998 T22: 0.6003 REMARK 3 T33: 0.6005 T12: -0.0893 REMARK 3 T13: -0.0385 T23: 0.0668 REMARK 3 L TENSOR REMARK 3 L11: 3.8954 L22: 5.2054 REMARK 3 L33: 7.0362 L12: 0.3410 REMARK 3 L13: -1.8442 L23: 0.2896 REMARK 3 S TENSOR REMARK 3 S11: 0.0249 S12: 0.1497 S13: 0.4421 REMARK 3 S21: 0.1359 S22: -0.1570 S23: 0.0757 REMARK 3 S31: -1.0831 S32: 0.3683 S33: 0.2525 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 101 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2689 27.5884 9.5122 REMARK 3 T TENSOR REMARK 3 T11: 0.9344 T22: 0.7317 REMARK 3 T33: 0.6977 T12: -0.0549 REMARK 3 T13: 0.0071 T23: -0.0927 REMARK 3 L TENSOR REMARK 3 L11: 6.6460 L22: 6.9477 REMARK 3 L33: 7.8868 L12: 2.1411 REMARK 3 L13: -0.4413 L23: 0.1013 REMARK 3 S TENSOR REMARK 3 S11: 0.1697 S12: -1.7095 S13: 0.7003 REMARK 3 S21: 0.9257 S22: -0.8592 S23: -0.4329 REMARK 3 S31: -1.1154 S32: -0.2069 S33: 0.1764 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 121 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9442 14.1516 5.9525 REMARK 3 T TENSOR REMARK 3 T11: 0.5772 T22: 0.5586 REMARK 3 T33: 0.5090 T12: -0.0481 REMARK 3 T13: 0.0401 T23: -0.0605 REMARK 3 L TENSOR REMARK 3 L11: 8.0029 L22: 3.5695 REMARK 3 L33: 6.5584 L12: -1.8701 REMARK 3 L13: 1.7397 L23: -2.5499 REMARK 3 S TENSOR REMARK 3 S11: 0.0830 S12: -0.4732 S13: 0.2147 REMARK 3 S21: 0.4962 S22: -0.0158 S23: 0.3756 REMARK 3 S31: 0.3312 S32: -0.8840 S33: 0.0214 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 148 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.5581 6.4878 5.4793 REMARK 3 T TENSOR REMARK 3 T11: 0.4690 T22: 0.4465 REMARK 3 T33: 0.5191 T12: -0.0979 REMARK 3 T13: 0.0024 T23: -0.0384 REMARK 3 L TENSOR REMARK 3 L11: 3.3090 L22: 3.8993 REMARK 3 L33: 6.6566 L12: -1.6729 REMARK 3 L13: -0.6986 L23: -3.2325 REMARK 3 S TENSOR REMARK 3 S11: -0.0239 S12: 0.1055 S13: -0.1318 REMARK 3 S21: 0.2022 S22: -0.0559 S23: -0.2298 REMARK 3 S31: -0.2153 S32: 0.3396 S33: 0.0918 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6V3Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-DEC-19. REMARK 100 THE DEPOSITION ID IS D_1000245693. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29670 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.75900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, MOLREP REMARK 200 STARTING MODEL: THE UNDEPOSITED STRUCTURE OF MBL FROM HIRSCHIA REMARK 200 BALTICA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE:HCL PH 5.6, 20% REMARK 280 (V/V) 2-PROPANOL, 20% (W/V) PEG 4000, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.61333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 13.80667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 SER A 226 REMARK 465 THR A 227 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 SER B 226 REMARK 465 THR B 227 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 1 79.39 -110.84 REMARK 500 ASP A 48 141.09 70.33 REMARK 500 PHE A 193 66.43 -112.69 REMARK 500 ILE B 12 -61.16 -98.16 REMARK 500 ASP B 48 142.92 70.41 REMARK 500 PHE B 193 66.23 -112.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 78 NE2 REMARK 620 2 HIS A 80 ND1 101.8 REMARK 620 3 HIS A 142 NE2 104.2 108.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 78 NE2 REMARK 620 2 HIS B 80 ND1 109.6 REMARK 620 3 HIS B 142 NE2 103.2 109.1 REMARK 620 4 HOH B 403 O 132.9 96.4 104.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP06560 RELATED DB: TARGETTRACK DBREF 6V3Q A 1 227 UNP K7SA42 K7SA42_PSEAI 35 261 DBREF 6V3Q B 1 227 UNP K7SA42 K7SA42_PSEAI 35 261 SEQADV 6V3Q SER A -2 UNP K7SA42 EXPRESSION TAG SEQADV 6V3Q ASN A -1 UNP K7SA42 EXPRESSION TAG SEQADV 6V3Q ALA A 0 UNP K7SA42 EXPRESSION TAG SEQADV 6V3Q SER B -2 UNP K7SA42 EXPRESSION TAG SEQADV 6V3Q ASN B -1 UNP K7SA42 EXPRESSION TAG SEQADV 6V3Q ALA B 0 UNP K7SA42 EXPRESSION TAG SEQRES 1 A 230 SER ASN ALA GLN PRO LYS ASP VAL PRO VAL THR PHE THR SEQRES 2 A 230 ALA ILE THR GLN GLY VAL TRP MET HIS THR SER MET LYS SEQRES 3 A 230 HIS MET GLU ASN TRP GLY HIS VAL PRO SER ASN GLY LEU SEQRES 4 A 230 ILE VAL GLU LYS GLY ASP PHE SER ILE LEU VAL ASP THR SEQRES 5 A 230 ALA TRP ASP ASP PRO GLN THR ALA GLN ILE ILE GLU TRP SEQRES 6 A 230 SER LYS ASP THR LEU LYS LYS PRO ILE ARG TRP ALA VAL SEQRES 7 A 230 PHE THR HIS ALA HIS ASP ASP LYS MET GLY GLY VAL ALA SEQRES 8 A 230 ALA LEU ARG GLN GLN GLY ILE VAL THR TYR ALA ALA ALA SEQRES 9 A 230 ASP SER ASN ARG MET ALA PRO GLN ASN GLY LEU THR PRO SEQRES 10 A 230 ALA GLU HIS ASP LEU ILE PHE ASP SER GLU HIS SER THR SEQRES 11 A 230 SER VAL LEU HIS PRO LEU VAL ILE PHE ASP PRO GLY PRO SEQRES 12 A 230 GLY HIS THR ARG ASP ASN ILE VAL VAL GLY LEU PRO GLU SEQRES 13 A 230 GLN GLY ILE VAL PHE GLY GLY OCS LEU ILE ARG PRO SER SEQRES 14 A 230 GLY SER THR SER LEU GLY ASN THR ALA ASP ALA ASP LEU SEQRES 15 A 230 ALA HIS TRP LYS THR ALA VAL LEU ALA VAL ALA GLN ARG SEQRES 16 A 230 PHE ALA GLU ALA GLN GLN ILE ILE PRO SER HIS GLY PRO SEQRES 17 A 230 MET ALA GLY ARG GLU LEU PHE GLU LEU THR ALA GLN LEU SEQRES 18 A 230 ALA GLU LYS ALA SER ILE PRO SER THR SEQRES 1 B 230 SER ASN ALA GLN PRO LYS ASP VAL PRO VAL THR PHE THR SEQRES 2 B 230 ALA ILE THR GLN GLY VAL TRP MET HIS THR SER MET LYS SEQRES 3 B 230 HIS MET GLU ASN TRP GLY HIS VAL PRO SER ASN GLY LEU SEQRES 4 B 230 ILE VAL GLU LYS GLY ASP PHE SER ILE LEU VAL ASP THR SEQRES 5 B 230 ALA TRP ASP ASP PRO GLN THR ALA GLN ILE ILE GLU TRP SEQRES 6 B 230 SER LYS ASP THR LEU LYS LYS PRO ILE ARG TRP ALA VAL SEQRES 7 B 230 PHE THR HIS ALA HIS ASP ASP LYS MET GLY GLY VAL ALA SEQRES 8 B 230 ALA LEU ARG GLN GLN GLY ILE VAL THR TYR ALA ALA ALA SEQRES 9 B 230 ASP SER ASN ARG MET ALA PRO GLN ASN GLY LEU THR PRO SEQRES 10 B 230 ALA GLU HIS ASP LEU ILE PHE ASP SER GLU HIS SER THR SEQRES 11 B 230 SER VAL LEU HIS PRO LEU VAL ILE PHE ASP PRO GLY PRO SEQRES 12 B 230 GLY HIS THR ARG ASP ASN ILE VAL VAL GLY LEU PRO GLU SEQRES 13 B 230 GLN GLY ILE VAL PHE GLY GLY OCS LEU ILE ARG PRO SER SEQRES 14 B 230 GLY SER THR SER LEU GLY ASN THR ALA ASP ALA ASP LEU SEQRES 15 B 230 ALA HIS TRP LYS THR ALA VAL LEU ALA VAL ALA GLN ARG SEQRES 16 B 230 PHE ALA GLU ALA GLN GLN ILE ILE PRO SER HIS GLY PRO SEQRES 17 B 230 MET ALA GLY ARG GLU LEU PHE GLU LEU THR ALA GLN LEU SEQRES 18 B 230 ALA GLU LYS ALA SER ILE PRO SER THR MODRES 6V3Q OCS A 161 CYS MODIFIED RESIDUE MODRES 6V3Q OCS B 161 CYS MODIFIED RESIDUE HET OCS A 161 9 HET OCS B 161 9 HET ZN A 300 1 HET ZN B 300 1 HET IPA B 301 4 HETNAM OCS CYSTEINESULFONIC ACID HETNAM ZN ZINC ION HETNAM IPA ISOPROPYL ALCOHOL HETSYN IPA 2-PROPANOL FORMUL 1 OCS 2(C3 H7 N O5 S) FORMUL 3 ZN 2(ZN 2+) FORMUL 5 IPA C3 H8 O FORMUL 6 HOH *52(H2 O) HELIX 1 AA1 ASP A 52 THR A 66 1 15 HELIX 2 AA2 HIS A 80 GLY A 85 1 6 HELIX 3 AA3 GLY A 86 GLN A 93 1 8 HELIX 4 AA4 ALA A 100 MET A 106 1 7 HELIX 5 AA5 OCS A 161 ILE A 163 5 3 HELIX 6 AA6 HIS A 181 PHE A 193 1 13 HELIX 7 AA7 ARG A 209 ILE A 224 1 16 HELIX 8 AA8 ASP B 52 THR B 66 1 15 HELIX 9 AA9 HIS B 80 GLY B 85 1 6 HELIX 10 AB1 GLY B 86 GLN B 93 1 8 HELIX 11 AB2 ALA B 100 ALA B 107 1 8 HELIX 12 AB3 PRO B 108 GLY B 111 5 4 HELIX 13 AB4 OCS B 161 ILE B 163 5 3 HELIX 14 AB5 HIS B 181 PHE B 193 1 13 HELIX 15 AB6 ARG B 209 ILE B 224 1 16 SHEET 1 AA1 7 THR A 8 THR A 13 0 SHEET 2 AA1 7 VAL A 16 HIS A 24 -1 O MET A 18 N THR A 10 SHEET 3 AA1 7 HIS A 30 LYS A 40 -1 O ILE A 37 N TRP A 17 SHEET 4 AA1 7 PHE A 43 VAL A 47 -1 O ILE A 45 N VAL A 38 SHEET 5 AA1 7 ILE A 71 VAL A 75 1 O TRP A 73 N LEU A 46 SHEET 6 AA1 7 VAL A 96 ALA A 99 1 O TYR A 98 N ALA A 74 SHEET 7 AA1 7 HIS A 117 ASP A 118 1 O HIS A 117 N THR A 97 SHEET 1 AA2 5 SER A 126 THR A 127 0 SHEET 2 AA2 5 VAL A 134 PHE A 136 -1 O ILE A 135 N THR A 127 SHEET 3 AA2 5 VAL A 148 LEU A 151 -1 O GLY A 150 N VAL A 134 SHEET 4 AA2 5 ILE A 156 GLY A 160 -1 O ILE A 156 N LEU A 151 SHEET 5 AA2 5 GLN A 198 PRO A 201 1 O ILE A 200 N VAL A 157 SHEET 1 AA3 7 THR B 8 THR B 13 0 SHEET 2 AA3 7 VAL B 16 HIS B 24 -1 O MET B 18 N THR B 10 SHEET 3 AA3 7 HIS B 30 LYS B 40 -1 O ILE B 37 N TRP B 17 SHEET 4 AA3 7 PHE B 43 VAL B 47 -1 O PHE B 43 N LYS B 40 SHEET 5 AA3 7 ILE B 71 PHE B 76 1 O TRP B 73 N LEU B 46 SHEET 6 AA3 7 VAL B 96 ALA B 99 1 O VAL B 96 N ARG B 72 SHEET 7 AA3 7 HIS B 117 ASP B 118 1 O HIS B 117 N THR B 97 SHEET 1 AA4 5 SER B 126 THR B 127 0 SHEET 2 AA4 5 VAL B 134 PHE B 136 -1 O ILE B 135 N THR B 127 SHEET 3 AA4 5 VAL B 148 LEU B 151 -1 O GLY B 150 N VAL B 134 SHEET 4 AA4 5 ILE B 156 GLY B 160 -1 O ILE B 156 N LEU B 151 SHEET 5 AA4 5 GLN B 198 PRO B 201 1 O ILE B 200 N VAL B 157 LINK C GLY A 160 N OCS A 161 1555 1555 1.33 LINK C OCS A 161 N LEU A 162 1555 1555 1.33 LINK C GLY B 160 N OCS B 161 1555 1555 1.33 LINK C OCS B 161 N LEU B 162 1555 1555 1.33 LINK NE2 HIS A 78 ZN ZN A 300 1555 1555 2.22 LINK ND1 HIS A 80 ZN ZN A 300 1555 1555 2.14 LINK NE2 HIS A 142 ZN ZN A 300 1555 1555 2.26 LINK NE2 HIS B 78 ZN ZN B 300 1555 1555 2.31 LINK ND1 HIS B 80 ZN ZN B 300 1555 1555 2.12 LINK NE2 HIS B 142 ZN ZN B 300 1555 1555 2.28 LINK ZN ZN B 300 O HOH B 403 1555 1555 2.53 CISPEP 1 HIS A 131 PRO A 132 0 12.51 CISPEP 2 HIS B 131 PRO B 132 0 8.92 SITE 1 AC1 5 HIS A 78 HIS A 80 HIS A 142 OCS A 161 SITE 2 AC1 5 HOH A 426 SITE 1 AC2 5 HIS B 78 HIS B 80 HIS B 142 OCS B 161 SITE 2 AC2 5 HOH B 403 SITE 1 AC3 2 GLN B 191 ARG B 192 CRYST1 128.109 128.109 41.420 90.00 90.00 120.00 P 32 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007806 0.004507 0.000000 0.00000 SCALE2 0.000000 0.009013 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024143 0.00000