HEADER TRANSFERASE 26-NOV-19 6V3W TITLE HUMAN POLY(ADP-RIBOSE) POLYMERASE 12, CATALYTIC FRAGMENT WITH FOUR TITLE 2 POINT MUTATIONS IN COMPLEX WITH RBN-2397 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN MONO-ADP-RIBOSYLTRANSFERASE PARP12; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ADP-RIBOSYLTRANSFERASE DIPHTHERIA TOXIN-LIKE 12,ARTD12,POLY COMPND 5 [ADP-RIBOSE] POLYMERASE 12,PARP-12,ZINC FINGER CCCH DOMAIN-CONTAINING COMPND 6 PROTEIN 1; COMPND 7 EC: 2.4.2.-; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PARP12, ZC3HDC1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS ADP-RIBOSYLTRANSFERASE ACTIVITY, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.K.SWINGER,J.M.GOZGIT,M.M.VASBINDER,T.J.WIGLE,K.W.KUNTZ REVDAT 5 11-OCT-23 6V3W 1 REMARK REVDAT 4 29-SEP-21 6V3W 1 JRNL REVDAT 3 25-AUG-21 6V3W 1 JRNL REVDAT 2 18-AUG-21 6V3W 1 JRNL REVDAT 1 16-DEC-20 6V3W 0 JRNL AUTH J.M.GOZGIT,M.M.VASBINDER,R.P.ABO,K.KUNII,K.G.KUPLAST-BARR, JRNL AUTH 2 B.GUI,A.Z.LU,J.R.MOLINA,E.MINISSALE,K.K.SWINGER,T.J.WIGLE, JRNL AUTH 3 D.J.BLACKWELL,C.R.MAJER,Y.REN,M.NIEPEL,Z.A.VARSAMIS, JRNL AUTH 4 S.P.NAYAK,E.BAMBERG,J.R.MO,W.D.CHURCH,A.S.A.MADY,J.SONG, JRNL AUTH 5 L.UTLEY,P.E.RAO,T.J.MITCHISON,K.W.KUNTZ,V.M.RICHON, JRNL AUTH 6 H.KEILHACK JRNL TITL PARP7 NEGATIVELY REGULATES THE TYPE I INTERFERON RESPONSE IN JRNL TITL 2 CANCER CELLS AND ITS INHIBITION TRIGGERS ANTITUMOR IMMUNITY. JRNL REF CANCER CELL V. 39 1214 2021 JRNL REFN ISSN 1535-6108 JRNL PMID 34375612 JRNL DOI 10.1016/J.CCELL.2021.06.018 REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0257 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 17084 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 918 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.04 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.09 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1212 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.3290 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1497 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 49 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.97000 REMARK 3 B22 (A**2) : 0.97000 REMARK 3 B33 (A**2) : -3.16000 REMARK 3 B12 (A**2) : 0.49000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.176 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.166 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.158 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.292 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1680 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1431 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2287 ; 1.592 ; 1.669 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3329 ; 1.353 ; 1.594 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 199 ; 7.106 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 96 ;34.462 ;22.813 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 256 ;15.241 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;27.990 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 200 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1930 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 395 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 496 A 524 REMARK 3 ORIGIN FOR THE GROUP (A): -9.749 17.048 -21.151 REMARK 3 T TENSOR REMARK 3 T11: 0.1419 T22: 0.2047 REMARK 3 T33: 0.1037 T12: 0.0540 REMARK 3 T13: 0.0750 T23: 0.0819 REMARK 3 L TENSOR REMARK 3 L11: 7.0291 L22: 6.1231 REMARK 3 L33: 6.1107 L12: 4.1786 REMARK 3 L13: 4.6161 L23: 0.5909 REMARK 3 S TENSOR REMARK 3 S11: 0.1970 S12: 0.6073 S13: -0.0986 REMARK 3 S21: -0.1526 S22: -0.2324 S23: -0.5474 REMARK 3 S31: 0.0345 S32: 0.9014 S33: 0.0354 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 525 A 551 REMARK 3 ORIGIN FOR THE GROUP (A): -9.978 20.241 -6.167 REMARK 3 T TENSOR REMARK 3 T11: 0.0809 T22: 0.1116 REMARK 3 T33: 0.0941 T12: -0.0693 REMARK 3 T13: -0.0370 T23: 0.0307 REMARK 3 L TENSOR REMARK 3 L11: 2.7485 L22: 2.6112 REMARK 3 L33: 6.0995 L12: -0.3870 REMARK 3 L13: 1.1543 L23: -0.7577 REMARK 3 S TENSOR REMARK 3 S11: -0.1631 S12: -0.0299 S13: 0.4497 REMARK 3 S21: 0.1157 S22: -0.1884 S23: -0.1904 REMARK 3 S31: -0.5868 S32: 0.7217 S33: 0.3515 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 552 A 558 REMARK 3 ORIGIN FOR THE GROUP (A): -12.446 6.237 4.363 REMARK 3 T TENSOR REMARK 3 T11: 0.1324 T22: 0.0576 REMARK 3 T33: 0.0767 T12: 0.0050 REMARK 3 T13: 0.0356 T23: 0.0284 REMARK 3 L TENSOR REMARK 3 L11: 4.7838 L22: 2.3445 REMARK 3 L33: 13.9813 L12: 3.1719 REMARK 3 L13: 3.4897 L23: 0.6610 REMARK 3 S TENSOR REMARK 3 S11: -0.0630 S12: -0.1415 S13: -0.2553 REMARK 3 S21: -0.1173 S22: -0.1441 S23: -0.2279 REMARK 3 S31: 0.5637 S32: 0.1904 S33: 0.2072 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 559 A 583 REMARK 3 ORIGIN FOR THE GROUP (A): -19.653 24.325 -10.851 REMARK 3 T TENSOR REMARK 3 T11: 0.0955 T22: 0.1321 REMARK 3 T33: 0.1990 T12: 0.0381 REMARK 3 T13: -0.0299 T23: -0.0493 REMARK 3 L TENSOR REMARK 3 L11: 2.3743 L22: 7.8580 REMARK 3 L33: 8.7410 L12: 0.1528 REMARK 3 L13: 0.3557 L23: -1.2933 REMARK 3 S TENSOR REMARK 3 S11: 0.0053 S12: -0.1060 S13: 0.6066 REMARK 3 S21: 0.1897 S22: -0.3344 S23: 0.4313 REMARK 3 S31: -0.7958 S32: -0.7547 S33: 0.3292 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 584 A 594 REMARK 3 ORIGIN FOR THE GROUP (A): -33.472 20.748 -6.564 REMARK 3 T TENSOR REMARK 3 T11: 0.3954 T22: 1.2863 REMARK 3 T33: 0.4814 T12: 0.1688 REMARK 3 T13: -0.0127 T23: -0.1025 REMARK 3 L TENSOR REMARK 3 L11: 10.0456 L22: 9.9952 REMARK 3 L33: 1.4597 L12: -10.0033 REMARK 3 L13: 3.6376 L23: -3.6567 REMARK 3 S TENSOR REMARK 3 S11: -0.0505 S12: -0.0912 S13: -0.1606 REMARK 3 S21: 0.0168 S22: 0.1538 S23: 0.2660 REMARK 3 S31: -0.1065 S32: -0.4367 S33: -0.1032 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 595 A 623 REMARK 3 ORIGIN FOR THE GROUP (A): -21.609 18.860 -17.521 REMARK 3 T TENSOR REMARK 3 T11: 0.1195 T22: 0.1022 REMARK 3 T33: 0.0706 T12: 0.0319 REMARK 3 T13: 0.0054 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 3.6499 L22: 3.0658 REMARK 3 L33: 10.2547 L12: 0.4044 REMARK 3 L13: 0.5961 L23: -1.1730 REMARK 3 S TENSOR REMARK 3 S11: 0.1292 S12: 0.1449 S13: 0.4842 REMARK 3 S21: -0.3442 S22: -0.2642 S23: 0.1732 REMARK 3 S31: -0.1220 S32: -0.6063 S33: 0.1350 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 624 A 639 REMARK 3 ORIGIN FOR THE GROUP (A): -29.421 12.158 0.585 REMARK 3 T TENSOR REMARK 3 T11: 0.2242 T22: 0.3095 REMARK 3 T33: 0.1634 T12: -0.1347 REMARK 3 T13: 0.0244 T23: -0.0918 REMARK 3 L TENSOR REMARK 3 L11: 11.8017 L22: 6.3073 REMARK 3 L33: 3.3481 L12: -1.0115 REMARK 3 L13: -2.3214 L23: -1.1120 REMARK 3 S TENSOR REMARK 3 S11: -0.0219 S12: 0.0234 S13: 0.0128 REMARK 3 S21: 0.2359 S22: -0.0926 S23: 0.8880 REMARK 3 S31: -0.1336 S32: -0.6834 S33: 0.1145 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 640 A 652 REMARK 3 ORIGIN FOR THE GROUP (A): -25.994 8.312 7.074 REMARK 3 T TENSOR REMARK 3 T11: 0.2025 T22: 0.3025 REMARK 3 T33: 0.2142 T12: -0.2035 REMARK 3 T13: 0.0789 T23: -0.1431 REMARK 3 L TENSOR REMARK 3 L11: 1.8482 L22: 4.2455 REMARK 3 L33: 11.7407 L12: 2.4713 REMARK 3 L13: -4.3808 L23: -6.9876 REMARK 3 S TENSOR REMARK 3 S11: -0.1696 S12: 0.3258 S13: -0.2246 REMARK 3 S21: -0.0391 S22: 0.1294 S23: 0.1115 REMARK 3 S31: 0.1731 S32: -0.3964 S33: 0.0403 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 653 A 665 REMARK 3 ORIGIN FOR THE GROUP (A): -25.833 10.853 -6.345 REMARK 3 T TENSOR REMARK 3 T11: 0.1395 T22: 0.1819 REMARK 3 T33: 0.0301 T12: -0.0812 REMARK 3 T13: 0.0273 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 4.9890 L22: 11.4787 REMARK 3 L33: 5.6146 L12: 4.2849 REMARK 3 L13: 5.2727 L23: 5.0085 REMARK 3 S TENSOR REMARK 3 S11: -0.1665 S12: -0.0932 S13: 0.0800 REMARK 3 S21: -0.8702 S22: 0.0978 S23: 0.1222 REMARK 3 S31: -0.2455 S32: -0.0789 S33: 0.0687 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 666 A 680 REMARK 3 ORIGIN FOR THE GROUP (A): -15.287 21.416 -14.799 REMARK 3 T TENSOR REMARK 3 T11: 0.0841 T22: 0.0368 REMARK 3 T33: 0.0773 T12: -0.0037 REMARK 3 T13: -0.0122 T23: 0.0394 REMARK 3 L TENSOR REMARK 3 L11: 2.0631 L22: 1.3736 REMARK 3 L33: 9.6932 L12: 0.6498 REMARK 3 L13: 0.3051 L23: -1.0266 REMARK 3 S TENSOR REMARK 3 S11: -0.0367 S12: 0.1046 S13: 0.1699 REMARK 3 S21: -0.0500 S22: -0.1311 S23: -0.0647 REMARK 3 S31: -0.3810 S32: 0.3683 S33: 0.1678 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6V3W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1000245704. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 63 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.6.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18026 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.040 REMARK 200 RESOLUTION RANGE LOW (A) : 69.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 19.30 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 18.80 REMARK 200 R MERGE FOR SHELL (I) : 1.63600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 2PQF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 0.1 M SODIUM REMARK 280 ACETATE PH 4, 15% W/V PEG 4000, PH 4.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.09867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.54933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 71.32400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 23.77467 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 118.87333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 95.09867 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 47.54933 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 23.77467 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 71.32400 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 118.87333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -40.23300 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 69.68560 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -23.77467 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 487 REMARK 465 MET A 488 REMARK 465 ASP A 489 REMARK 465 SER A 490 REMARK 465 SER A 491 REMARK 465 ALA A 492 REMARK 465 LEU A 493 REMARK 465 PRO A 494 REMARK 465 ASP A 495 REMARK 465 GLY A 588 REMARK 465 THR A 589 REMARK 465 SER A 681 REMARK 465 LYS A 682 REMARK 465 PRO A 683 REMARK 465 SER A 684 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 578 171.64 76.77 REMARK 500 SER A 610 -45.25 -139.06 REMARK 500 ASP A 611 18.45 57.87 REMARK 500 ASP A 657 54.48 -166.43 REMARK 500 ASP A 657 69.26 -105.68 REMARK 500 SER A 659 -16.55 -143.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QO4 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 702 DBREF 6V3W A 489 684 UNP Q9H0J9 PAR12_HUMAN 489 684 SEQADV 6V3W SER A 487 UNP Q9H0J9 EXPRESSION TAG SEQADV 6V3W MET A 488 UNP Q9H0J9 EXPRESSION TAG SEQADV 6V3W VAL A 570 UNP Q9H0J9 PHE 570 ENGINEERED MUTATION SEQADV 6V3W GLY A 573 UNP Q9H0J9 ALA 573 ENGINEERED MUTATION SEQADV 6V3W HIS A 577 UNP Q9H0J9 GLN 577 ENGINEERED MUTATION SEQADV 6V3W PHE A 607 UNP Q9H0J9 TYR 607 ENGINEERED MUTATION SEQRES 1 A 198 SER MET ASP SER SER ALA LEU PRO ASP PRO GLY PHE GLN SEQRES 2 A 198 LYS ILE THR LEU SER SER SER SER GLU GLU TYR GLN LYS SEQRES 3 A 198 VAL TRP ASN LEU PHE ASN ARG THR LEU PRO PHE TYR PHE SEQRES 4 A 198 VAL GLN LYS ILE GLU ARG VAL GLN ASN LEU ALA LEU TRP SEQRES 5 A 198 GLU VAL TYR GLN TRP GLN LYS GLY GLN MET GLN LYS GLN SEQRES 6 A 198 ASN GLY GLY LYS ALA VAL ASP GLU ARG GLN LEU PHE HIS SEQRES 7 A 198 GLY THR SER ALA ILE VAL VAL ASP GLY ILE CYS GLN HIS SEQRES 8 A 198 ASN PHE ASP TRP ARG VAL CYS GLY VAL HIS GLY THR SER SEQRES 9 A 198 TYR GLY LYS GLY SER TYR PHE ALA ARG ASP ALA ALA TYR SEQRES 10 A 198 SER HIS HIS PHE SER LYS SER ASP THR GLN THR HIS THR SEQRES 11 A 198 MET PHE LEU ALA ARG VAL LEU VAL GLY GLU PHE VAL ARG SEQRES 12 A 198 GLY ASN ALA SER PHE VAL ARG PRO PRO ALA LYS GLU GLY SEQRES 13 A 198 TRP SER ASN ALA PHE TYR ASP SER CYS VAL ASN SER VAL SEQRES 14 A 198 SER ASP PRO SER ILE PHE VAL ILE PHE GLU LYS HIS GLN SEQRES 15 A 198 VAL TYR PRO GLU TYR VAL ILE GLN TYR THR THR SER SER SEQRES 16 A 198 LYS PRO SER HET QO4 A 701 36 HET CL A 702 1 HETNAM QO4 5-{[(2S)-1-(3-OXO-3-{4-[5-(TRIFLUOROMETHYL)PYRIMIDIN-2- HETNAM 2 QO4 YL]PIPERAZIN-1-YL}PROPOXY)PROPAN-2-YL]AMINO}-4- HETNAM 3 QO4 (TRIFLUOROMETHYL)PYRIDAZIN-3(2H)-ONE HETNAM CL CHLORIDE ION HETSYN QO4 RBN-2397 FORMUL 2 QO4 C20 H23 F6 N7 O3 FORMUL 3 CL CL 1- FORMUL 4 HOH *49(H2 O) HELIX 1 AA1 SER A 507 ARG A 519 1 13 HELIX 2 AA2 LEU A 535 ASN A 552 1 18 HELIX 3 AA3 SER A 567 ILE A 569 5 3 HELIX 4 AA4 VAL A 570 ASN A 578 1 9 HELIX 5 AA5 ASP A 580 CYS A 584 5 5 HELIX 6 AA6 ASP A 600 HIS A 605 1 6 HELIX 7 AA7 HIS A 606 SER A 608 5 3 HELIX 8 AA8 GLU A 665 HIS A 667 5 3 SHEET 1 AA1 5 PHE A 498 THR A 502 0 SHEET 2 AA1 5 PHE A 525 ASN A 534 -1 O ARG A 531 N ILE A 501 SHEET 3 AA1 5 VAL A 669 THR A 678 -1 O GLN A 676 N LYS A 528 SHEET 4 AA1 5 THR A 614 VAL A 622 -1 N HIS A 615 O TYR A 677 SHEET 5 AA1 5 ARG A 560 THR A 566 -1 N ARG A 560 O VAL A 622 SHEET 1 AA2 4 SER A 595 ALA A 598 0 SHEET 2 AA2 4 ILE A 660 ILE A 663 -1 O ILE A 663 N SER A 595 SHEET 3 AA2 4 SER A 650 VAL A 652 -1 N CYS A 651 O VAL A 662 SHEET 4 AA2 4 PHE A 627 ARG A 629 1 N VAL A 628 O VAL A 652 SSBOND 1 CYS A 584 CYS A 584 1555 12564 2.02 SITE 1 AC1 15 HIS A 564 GLY A 565 ILE A 569 GLY A 573 SITE 2 AC1 15 ILE A 574 ASN A 578 PHE A 579 ASP A 580 SITE 3 AC1 15 SER A 595 TYR A 596 PHE A 597 ALA A 598 SITE 4 AC1 15 TYR A 603 SER A 604 PHE A 607 SITE 1 AC2 3 PHE A 579 TRP A 581 SER A 595 CRYST1 80.466 80.466 142.648 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012428 0.007175 0.000000 0.00000 SCALE2 0.000000 0.014350 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007010 0.00000