HEADER GENE REGULATION 26-NOV-19 6V3X TITLE CRYSTAL STRUCTURE OF EED IN COMPLEX WITH PALI1-K1241ME3 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYCOMB PROTEIN EED; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 81-440; COMPND 5 SYNONYM: HEED,EMBRYONIC ECTODERM DEVELOPMENT PROTEIN,WD PROTEIN COMPND 6 ASSOCIATING WITH INTEGRIN CYTOPLASMIC TAILS 1,WAIT-1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PALI1 PEPTIDE; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: RESIDUES 1239-1244; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: UNP Q96JN0-3 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EED; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS EED, PALI1, LCOR, C10ORF12, TRI-METHYL-LYSINE, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR Q.ZHANG,C.DAVIDOVICH REVDAT 4 11-OCT-23 6V3X 1 REMARK REVDAT 3 25-AUG-21 6V3X 1 JRNL REVDAT 2 04-AUG-21 6V3X 1 JRNL REVDAT 1 26-MAY-21 6V3X 0 JRNL AUTH Q.ZHANG,S.C.AGIUS,S.F.FLANIGAN,M.UCKELMANN,V.LEVINA, JRNL AUTH 2 B.M.OWEN,C.DAVIDOVICH JRNL TITL PALI1 FACILITATES DNA AND NUCLEOSOME BINDING BY PRC2 AND JRNL TITL 2 TRIGGERS AN ALLOSTERIC ACTIVATION OF CATALYSIS. JRNL REF NAT COMMUN V. 12 4592 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34321472 JRNL DOI 10.1038/S41467-021-24866-3 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Q.ZHANG,S.C.AGUIS,S.F.FLANIGAN,M.UCKELMANN,V.LEVINA, REMARK 1 AUTH 2 B.M.OWEN,C.DAVIDOVICH REMARK 1 TITL PALI1 FACILITATES DNA AND NUCLEOSOME BINDING BY PRC2 AND REMARK 1 TITL 2 TRIGGERS AN ALLOSTERIC ACTIVATION OF CATALYSIS REMARK 1 REF NAT COMMUN 2021 REMARK 1 REFN ESSN 2041-1723 REMARK 1 DOI S41467-021-24866-3 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 47040 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 2291 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2682 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.2218 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.2567 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2863 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 178 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.132 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.11 REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6V3X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1000245702. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95373 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47118 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 47.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : 0.63100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3IIW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.6 M SODIUM FORMATE, 10 MM TCEP, 5% REMARK 280 GLYCEROL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.12150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.21800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.36050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.21800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.12150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.36050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 75 REMARK 465 LYS A 76 REMARK 465 LYS A 77 REMARK 465 CYS A 78 REMARK 465 LYS A 79 REMARK 465 TYR A 80 REMARK 465 GLY A 108 REMARK 465 LEU A 440 REMARK 465 ARG A 441 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 81 OG REMARK 470 LYS A 83 CD CE NZ REMARK 470 LYS A 89 CE NZ REMARK 470 LYS A 106 CG CD CE NZ REMARK 470 GLU A 107 CG CD OE1 OE2 REMARK 470 ASP A 109 CG OD1 OD2 REMARK 470 PRO A 110 CG CD REMARK 470 GLN A 129 CG CD OE1 NE2 REMARK 470 ASN A 157 CG OD1 ND2 REMARK 470 GLU A 233 CG CD OE1 OE2 REMARK 470 ARG A 236 CD NE CZ NH1 NH2 REMARK 470 LYS A 268 CG CD CE NZ REMARK 470 ARG A 269 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 275 CD CE NZ REMARK 470 LYS A 284 CG CD CE NZ REMARK 470 ARG A 302 CZ NH1 REMARK 470 ASP A 303 CG OD1 OD2 REMARK 470 ARG A 306 NE CZ NH1 NH2 REMARK 470 LYS A 335 CD CE NZ REMARK 470 GLU A 337 CG CD OE1 OE2 REMARK 470 LYS A 342 CD CE NZ REMARK 470 LYS A 344 CD CE NZ REMARK 470 LYS A 408 CE NZ REMARK 470 LEU B1239 N CB CG CD1 CD2 REMARK 470 LYS B1240 CG CD CE NZ REMARK 470 GLY B1244 CA C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 516 O HOH A 571 2.16 REMARK 500 O PRO A 282 O HOH A 501 2.17 REMARK 500 O THR A 285 O HOH A 501 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 510 O HOH A 551 3544 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 118 -141.61 51.02 REMARK 500 LEU A 135 -87.61 -102.19 REMARK 500 SER A 159 -4.85 77.44 REMARK 500 ASN A 191 -163.44 -160.72 REMARK 500 HIS A 213 5.75 81.49 REMARK 500 PHE A 299 147.76 -173.64 REMARK 500 SER A 323 -156.36 -120.39 REMARK 500 TYR A 365 56.88 70.72 REMARK 500 REMARK 500 REMARK: NULL DBREF 6V3X A 81 440 UNP O75530 EED_HUMAN 81 440 DBREF 6V3X B 1239 1244 PDB 6V3X 6V3X 1239 1244 SEQADV 6V3X GLU A 107 UNP O75530 SER 107 CONFLICT SEQRES 1 A 367 GLY LYS LYS CYS LYS TYR SER PHE LYS CYS VAL ASN SER SEQRES 2 A 367 LEU LYS GLU ASP HIS ASN GLN PRO LEU PHE GLY VAL GLN SEQRES 3 A 367 PHE ASN TRP HIS SER LYS GLU GLY ASP PRO LEU VAL PHE SEQRES 4 A 367 ALA THR VAL GLY SER ASN ARG VAL THR LEU TYR GLU CYS SEQRES 5 A 367 HIS SER GLN GLY GLU ILE ARG LEU LEU GLN SER TYR VAL SEQRES 6 A 367 ASP ALA ASP ALA ASP GLU ASN PHE TYR THR CYS ALA TRP SEQRES 7 A 367 THR TYR ASP SER ASN THR SER HIS PRO LEU LEU ALA VAL SEQRES 8 A 367 ALA GLY SER ARG GLY ILE ILE ARG ILE ILE ASN PRO ILE SEQRES 9 A 367 THR MET GLN CYS ILE LYS HIS TYR VAL GLY HIS GLY ASN SEQRES 10 A 367 ALA ILE ASN GLU LEU LYS PHE HIS PRO ARG ASP PRO ASN SEQRES 11 A 367 LEU LEU LEU SER VAL SER LYS ASP HIS ALA LEU ARG LEU SEQRES 12 A 367 TRP ASN ILE GLN THR ASP THR LEU VAL ALA ILE PHE GLY SEQRES 13 A 367 GLY VAL GLU GLY HIS ARG ASP GLU VAL LEU SER ALA ASP SEQRES 14 A 367 TYR ASP LEU LEU GLY GLU LYS ILE MET SER CYS GLY MET SEQRES 15 A 367 ASP HIS SER LEU LYS LEU TRP ARG ILE ASN SER LYS ARG SEQRES 16 A 367 MET MET ASN ALA ILE LYS GLU SER TYR ASP TYR ASN PRO SEQRES 17 A 367 ASN LYS THR ASN ARG PRO PHE ILE SER GLN LYS ILE HIS SEQRES 18 A 367 PHE PRO ASP PHE SER THR ARG ASP ILE HIS ARG ASN TYR SEQRES 19 A 367 VAL ASP CYS VAL ARG TRP LEU GLY ASP LEU ILE LEU SER SEQRES 20 A 367 LYS SER CYS GLU ASN ALA ILE VAL CYS TRP LYS PRO GLY SEQRES 21 A 367 LYS MET GLU ASP ASP ILE ASP LYS ILE LYS PRO SER GLU SEQRES 22 A 367 SER ASN VAL THR ILE LEU GLY ARG PHE ASP TYR SER GLN SEQRES 23 A 367 CYS ASP ILE TRP TYR MET ARG PHE SER MET ASP PHE TRP SEQRES 24 A 367 GLN LYS MET LEU ALA LEU GLY ASN GLN VAL GLY LYS LEU SEQRES 25 A 367 TYR VAL TRP ASP LEU GLU VAL GLU ASP PRO HIS LYS ALA SEQRES 26 A 367 LYS CYS THR THR LEU THR HIS HIS LYS CYS GLY ALA ALA SEQRES 27 A 367 ILE ARG GLN THR SER PHE SER ARG ASP SER SER ILE LEU SEQRES 28 A 367 ILE ALA VAL CYS ASP ASP ALA SER ILE TRP ARG TRP ASP SEQRES 29 A 367 ARG LEU ARG SEQRES 1 B 6 LEU LYS M3L PHE PRO GLY HET M3L B1241 12 HETNAM M3L N-TRIMETHYLLYSINE FORMUL 2 M3L C9 H21 N2 O2 1+ FORMUL 3 HOH *178(H2 O) HELIX 1 AA1 SER A 267 TYR A 280 1 14 HELIX 2 AA2 ASN A 281 THR A 285 5 5 HELIX 3 AA3 ASP A 339 ILE A 343 5 5 HELIX 4 AA4 ASP A 395 ALA A 399 5 5 SHEET 1 AA1 4 LYS A 83 LYS A 89 0 SHEET 2 AA1 4 SER A 433 ASP A 438 -1 O ILE A 434 N LEU A 88 SHEET 3 AA1 4 ILE A 424 CYS A 429 -1 N LEU A 425 O TRP A 437 SHEET 4 AA1 4 ILE A 413 PHE A 418 -1 N SER A 417 O ILE A 426 SHEET 1 AA2 4 LEU A 96 PHE A 101 0 SHEET 2 AA2 4 LEU A 111 GLY A 117 -1 O ALA A 114 N GLN A 100 SHEET 3 AA2 4 ARG A 120 CYS A 126 -1 O CYS A 126 N LEU A 111 SHEET 4 AA2 4 ILE A 132 VAL A 139 -1 O ARG A 133 N GLU A 125 SHEET 1 AA3 4 PHE A 147 TYR A 154 0 SHEET 2 AA3 4 PRO A 161 GLY A 167 -1 O ALA A 164 N ALA A 151 SHEET 3 AA3 4 ILE A 172 ASN A 176 -1 O ILE A 175 N LEU A 163 SHEET 4 AA3 4 GLN A 181 TYR A 186 -1 O GLN A 181 N ASN A 176 SHEET 1 AA4 5 ILE A 193 PHE A 198 0 SHEET 2 AA4 5 LEU A 205 SER A 210 -1 O LEU A 207 N LYS A 197 SHEET 3 AA4 5 LEU A 215 ASN A 219 -1 O TRP A 218 N LEU A 206 SHEET 4 AA4 5 THR A 224 PHE A 229 -1 O PHE A 229 N LEU A 215 SHEET 5 AA4 5 GLN A 292 ILE A 294 1 O ILE A 294 N ILE A 228 SHEET 1 AA5 4 VAL A 239 TYR A 244 0 SHEET 2 AA5 4 LYS A 250 GLY A 255 -1 O CYS A 254 N LEU A 240 SHEET 3 AA5 4 LEU A 260 ARG A 264 -1 O TRP A 263 N ILE A 251 SHEET 4 AA5 4 PHE A 299 THR A 301 -1 O PHE A 299 N LEU A 262 SHEET 1 AA6 4 CYS A 311 LEU A 315 0 SHEET 2 AA6 4 LEU A 318 LYS A 322 -1 O LEU A 318 N LEU A 315 SHEET 3 AA6 4 ALA A 327 PRO A 333 -1 O VAL A 329 N SER A 321 SHEET 4 AA6 4 VAL A 350 ASP A 357 -1 O PHE A 356 N ILE A 328 SHEET 1 AA7 4 SER A 369 MET A 370 0 SHEET 2 AA7 4 MET A 376 GLY A 380 -1 O ALA A 378 N SER A 369 SHEET 3 AA7 4 LEU A 386 ASP A 390 -1 O TRP A 389 N LEU A 377 SHEET 4 AA7 4 LYS A 400 LEU A 404 -1 O LYS A 400 N ASP A 390 LINK C LYS B1240 N M3L B1241 1555 1555 1.33 LINK C M3L B1241 N PHE B1242 1555 1555 1.33 CRYST1 56.243 84.721 90.436 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017780 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011803 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011058 0.00000